Wall clock time and date at job start Tue Mar 31 2020 20:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34718 * 116.99757 * 2 1 4 4 O 1.21465 * 119.99790 * 0.02562 * 3 2 1 5 5 C 1.47739 * 119.99815 * 180.02562 * 3 2 1 6 6 C 1.39653 * 120.12439 * 359.97438 * 5 3 2 7 7 C 1.37956 * 119.96247 * 180.02562 * 6 5 3 8 8 C 1.38289 * 120.20854 * 0.27973 * 7 6 5 9 9 N 1.48020 * 119.87600 * 179.69580 * 8 7 6 10 10 O 1.21801 * 119.99389 * 0.02562 * 9 8 7 11 11 O 1.21794 * 120.00183 * 179.97438 * 9 8 7 12 12 C 1.38824 * 120.25040 * 359.44839 * 8 7 6 13 13 O 1.35912 * 119.98138 * 180.25834 * 12 8 7 14 14 C 1.42896 * 116.99946 * 180.29580 * 13 12 8 15 15 C 1.50702 * 109.47347 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99675 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00276 * 179.97438 * 15 14 13 18 18 C 1.46503 * 120.00132 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46893 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99935 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99818 * 179.97438 * 19 18 17 22 22 N 1.31525 * 119.99772 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00329 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46920 * 90.00018 * 23 21 19 25 25 H 1.48499 * 109.47102 * 210.00275 * 23 21 19 26 26 H 1.48504 * 109.46792 * 330.00452 * 23 21 19 27 27 C 1.38472 * 120.03384 * 0.54514 * 12 8 7 28 28 H 1.08995 * 109.47544 * 60.00097 * 1 2 3 29 29 H 1.09005 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47209 * 299.99897 * 1 2 3 31 31 H 1.08003 * 120.02253 * 0.02562 * 6 5 3 32 32 H 1.08002 * 119.89237 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.46820 * 299.99492 * 14 13 12 34 34 H 1.08999 * 109.47517 * 59.99728 * 14 13 12 35 35 H 0.96997 * 119.99718 * 359.97438 * 17 15 14 36 36 H 1.08999 * 109.46486 * 299.99535 * 18 17 15 37 37 H 1.08999 * 109.47009 * 59.99691 * 18 17 15 38 38 H 0.97003 * 119.99348 * 180.02562 * 22 21 19 39 39 H 1.08000 * 120.10604 * 179.74801 * 27 12 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3020 0.1081 -0.0006 7 6 5.6795 0.1843 -0.0006 8 6 6.3083 1.4159 0.0053 9 7 7.7867 1.4890 0.0120 10 8 8.4469 0.4654 0.0120 11 8 8.3429 2.5725 0.0167 12 6 5.5583 2.5841 -0.0004 13 8 6.1820 3.7916 0.0001 14 6 5.3485 4.9523 0.0007 15 6 6.2095 6.1892 0.0018 16 8 7.4179 6.0867 0.0025 17 7 5.6366 7.4091 0.0019 18 6 6.4736 8.6115 0.0024 19 6 5.5945 9.8355 0.0031 20 1 4.5199 9.7284 0.0028 21 6 6.1622 11.0919 0.0042 22 7 7.4710 11.2222 0.0041 23 14 5.0726 12.6092 0.0044 24 1 4.7830 13.0105 1.4046 25 1 5.7692 13.7189 -0.6946 26 1 3.7994 12.3044 -0.6966 27 6 4.1751 2.5196 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8142 -0.8554 -0.0006 32 1 6.2686 -0.7210 -0.0002 33 1 4.7192 4.9481 -0.8894 34 1 4.7192 4.9474 0.8906 35 1 4.6701 7.4910 0.0009 36 1 7.1026 8.6158 0.8926 37 1 7.1032 8.6163 -0.8874 38 1 7.8703 12.1062 0.0053 39 1 3.5904 3.4277 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042176522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:53 Heat of formation + Delta-G solvation = -123.491932 kcal Electronic energy + Delta-G solvation = -28138.883427 eV Core-core repulsion = 23630.378352 eV Total energy + Delta-G solvation = -4508.505076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.29474 -41.30376 -40.47254 -38.97695 -37.80536 -37.10356 -36.39217 -34.29849 -32.89775 -32.43304 -31.23435 -29.28201 -28.67269 -26.92206 -26.74634 -23.86376 -23.48115 -22.40826 -21.77560 -20.04595 -19.78713 -19.00046 -18.65764 -17.74023 -17.58382 -17.46729 -17.09439 -17.02704 -16.53799 -16.25446 -15.63331 -15.13353 -15.09712 -14.75858 -14.48575 -14.39007 -13.98600 -13.89726 -13.18613 -13.15668 -12.84656 -12.60707 -12.30991 -12.02744 -12.01769 -11.48553 -11.44783 -11.43171 -11.35982 -11.06117 -11.02073 -10.99402 -10.91859 -10.36423 -10.26809 -9.46249 -9.24013 -9.20709 -8.80318 -8.02200 -6.20896 -4.28786 -0.78853 0.40156 0.82699 1.24655 1.79516 1.85713 2.25684 2.77533 3.09235 3.21713 3.27960 3.30166 3.67107 3.81098 3.96219 3.98649 4.19069 4.28629 4.33778 4.53292 4.63338 4.68700 4.80642 4.88905 4.90228 5.02258 5.11989 5.15347 5.22143 5.28559 5.55956 5.61624 6.24353 6.53516 6.97256 7.20802 7.27060 7.44291 7.57691 7.65825 7.90171 8.44844 8.68252 8.92056 9.37572 10.89112 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011070 B = 0.002621 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.791300 B =10682.029098 C =13185.058592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.350 6.350 3 C 0.507 3.493 4 O -0.485 6.485 5 C -0.035 4.035 6 C -0.108 4.108 7 C -0.028 4.028 8 C -0.053 4.053 9 N 0.024 4.976 10 O -0.180 6.180 11 O -0.102 6.102 12 C 0.195 3.805 13 O -0.245 6.245 14 C 0.026 3.974 15 C 0.499 3.501 16 O -0.516 6.516 17 N -0.706 5.706 18 C 0.252 3.748 19 C -0.546 4.546 20 H 0.064 0.936 21 C 0.064 3.936 22 N -0.883 5.883 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.155 4.155 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.392 0.608 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.267 0.733 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.869 -26.600 -0.024 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.266 6.266 3 C 0.350 3.650 4 O -0.373 6.373 5 C -0.037 4.037 6 C -0.127 4.127 7 C -0.047 4.047 8 C -0.137 4.137 9 N 0.545 4.455 10 O -0.388 6.388 11 O -0.328 6.328 12 C 0.144 3.856 13 O -0.153 6.153 14 C -0.052 4.052 15 C 0.281 3.719 16 O -0.392 6.392 17 N -0.357 5.357 18 C 0.132 3.868 19 C -0.585 4.585 20 H 0.082 0.918 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.175 4.175 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.225 0.775 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.545 -26.252 -0.031 30.012 hybrid contribution -1.160 1.060 0.008 1.571 sum -15.705 -25.193 -0.023 29.687 Atomic orbital electron populations 1.23403 0.74893 1.04328 1.03140 1.86525 1.24358 1.31773 1.83956 1.20915 0.88525 0.82026 0.73526 1.90907 1.66415 1.35934 1.43999 1.19195 0.90088 0.94048 1.00363 1.21338 0.91979 0.99021 1.00386 1.20927 0.94934 0.96027 0.92818 1.20847 0.80891 0.94061 1.17899 1.43361 1.02503 1.01045 0.98631 1.94508 1.63942 1.25327 1.54975 1.94782 1.72361 1.15311 1.50357 1.18537 0.90276 0.85864 0.90913 1.86572 1.33420 1.10375 1.84963 1.23028 0.93976 0.84123 1.04123 1.19622 0.88753 0.83986 0.79537 1.90792 1.13765 1.86218 1.48415 1.46355 1.10874 1.05788 1.72680 1.19196 0.90519 0.78955 0.98174 1.21183 0.93103 0.90447 1.53718 0.91817 1.24955 0.95181 0.99238 0.94613 1.69979 1.09468 1.24080 1.48478 0.86395 0.80195 0.81947 0.78245 1.20434 1.20953 1.19747 1.21438 0.91868 0.99579 1.04577 0.91363 0.87453 0.91370 0.81968 0.81370 0.88434 0.88437 0.77546 0.95148 0.95141 0.92322 0.81468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.14 10.56 101.05 1.07 1.21 16 2 O -0.35 -2.20 9.81 -40.54 -0.40 -2.60 16 3 C 0.51 4.17 7.90 34.61 0.27 4.44 16 4 O -0.49 -5.21 16.13 -19.24 -0.31 -5.52 16 5 C -0.04 -0.28 5.87 -105.00 -0.62 -0.89 16 6 C -0.11 -0.65 9.61 -39.16 -0.38 -1.02 16 7 C -0.03 -0.21 9.53 -39.67 -0.38 -0.59 16 8 C -0.05 -0.61 6.87 -79.71 -0.55 -1.16 16 9 N 0.02 0.36 4.45 34.08 0.15 0.51 16 10 O -0.18 -2.63 18.43 -29.46 -0.54 -3.17 16 11 O -0.10 -1.87 17.22 -36.52 -0.63 -2.50 16 12 C 0.19 2.30 6.66 -39.28 -0.26 2.04 16 13 O -0.24 -3.69 7.66 -49.85 -0.38 -4.07 16 14 C 0.03 0.34 5.22 36.01 0.19 0.53 16 15 C 0.50 9.60 7.91 -10.98 -0.09 9.51 16 16 O -0.52 -12.62 16.50 -14.35 -0.24 -12.86 16 17 N -0.71 -14.01 5.55 -61.47 -0.34 -14.35 16 18 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 19 C -0.55 -14.42 9.28 -34.44 -0.32 -14.74 16 20 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.88 -25.71 13.29 55.43 0.74 -24.97 16 23 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 C -0.16 -1.42 8.58 -39.01 -0.33 -1.75 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.16 0.51 7.61 -52.48 -0.40 0.12 16 32 H 0.17 0.92 7.60 -52.49 -0.40 0.52 16 33 H 0.10 0.96 7.66 -51.93 -0.40 0.57 16 34 H 0.10 0.96 7.66 -51.93 -0.40 0.57 16 35 H 0.39 6.35 8.32 -40.82 -0.34 6.01 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.17 1.35 5.88 -52.49 -0.31 1.04 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -36.20 360.12 -6.95 -43.15 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.89 Total: -0.21 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.52 Total: 5.67 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.55 Total: -38.81 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -2.50 Total: -30.72 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.20 -6.95 -43.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042176522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.344 kcal (2) G-P(sol) polarization free energy of solvation -36.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds