Wall clock time and date at job start Tue Mar 31 2020 20:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34718 * 116.99757 * 2 1 4 4 O 1.21465 * 119.99790 * 0.02562 * 3 2 1 5 5 C 1.47739 * 119.99815 * 180.02562 * 3 2 1 6 6 C 1.39653 * 120.12439 * 359.97438 * 5 3 2 7 7 C 1.37956 * 119.96247 * 180.02562 * 6 5 3 8 8 C 1.38289 * 120.20854 * 0.27973 * 7 6 5 9 9 N 1.48020 * 119.87600 * 179.69580 * 8 7 6 10 10 O 1.21801 * 119.99389 * 0.02562 * 9 8 7 11 11 O 1.21794 * 120.00183 * 179.97438 * 9 8 7 12 12 C 1.38824 * 120.25040 * 359.44839 * 8 7 6 13 13 O 1.35912 * 119.98138 * 180.25834 * 12 8 7 14 14 C 1.42896 * 116.99946 * 180.29580 * 13 12 8 15 15 C 1.50702 * 109.47347 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99675 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00276 * 179.97438 * 15 14 13 18 18 C 1.46503 * 120.00132 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46893 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99935 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99818 * 179.97438 * 19 18 17 22 22 N 1.31525 * 119.99772 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00329 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46920 * 90.00018 * 23 21 19 25 25 H 1.48499 * 109.47102 * 210.00275 * 23 21 19 26 26 H 1.48504 * 109.46792 * 330.00452 * 23 21 19 27 27 C 1.38472 * 120.03384 * 0.54514 * 12 8 7 28 28 H 1.08995 * 109.47544 * 60.00097 * 1 2 3 29 29 H 1.09005 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47209 * 299.99897 * 1 2 3 31 31 H 1.08003 * 120.02253 * 0.02562 * 6 5 3 32 32 H 1.08002 * 119.89237 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.46820 * 299.99492 * 14 13 12 34 34 H 1.08999 * 109.47517 * 59.99728 * 14 13 12 35 35 H 0.96997 * 119.99718 * 359.97438 * 17 15 14 36 36 H 1.08999 * 109.46486 * 299.99535 * 18 17 15 37 37 H 1.08999 * 109.47009 * 59.99691 * 18 17 15 38 38 H 0.97003 * 119.99348 * 180.02562 * 22 21 19 39 39 H 1.08000 * 120.10604 * 179.74801 * 27 12 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3020 0.1081 -0.0006 7 6 5.6795 0.1843 -0.0006 8 6 6.3083 1.4159 0.0053 9 7 7.7867 1.4890 0.0120 10 8 8.4469 0.4654 0.0120 11 8 8.3429 2.5725 0.0167 12 6 5.5583 2.5841 -0.0004 13 8 6.1820 3.7916 0.0001 14 6 5.3485 4.9523 0.0007 15 6 6.2095 6.1892 0.0018 16 8 7.4179 6.0867 0.0025 17 7 5.6366 7.4091 0.0019 18 6 6.4736 8.6115 0.0024 19 6 5.5945 9.8355 0.0031 20 1 4.5199 9.7284 0.0028 21 6 6.1622 11.0919 0.0042 22 7 7.4710 11.2222 0.0041 23 14 5.0726 12.6092 0.0044 24 1 4.7830 13.0105 1.4046 25 1 5.7692 13.7189 -0.6946 26 1 3.7994 12.3044 -0.6966 27 6 4.1751 2.5196 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8142 -0.8554 -0.0006 32 1 6.2686 -0.7210 -0.0002 33 1 4.7192 4.9481 -0.8894 34 1 4.7192 4.9474 0.8906 35 1 4.6701 7.4910 0.0009 36 1 7.1026 8.6158 0.8926 37 1 7.1032 8.6163 -0.8874 38 1 7.8703 12.1062 0.0053 39 1 3.5904 3.4277 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042176522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:52 Heat of formation + Delta-G solvation = -148.556413 kcal Electronic energy + Delta-G solvation = -28139.970305 eV Core-core repulsion = 23630.378352 eV Total energy + Delta-G solvation = -4509.591953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.31497 -42.05641 -41.36587 -40.34568 -38.81232 -37.68414 -37.53313 -36.21151 -34.43497 -33.65754 -32.01480 -30.64462 -29.28927 -28.52587 -27.59553 -25.03576 -24.51507 -23.79283 -22.46376 -21.63803 -20.75891 -19.80194 -19.70539 -19.14858 -18.64542 -18.28869 -17.97177 -17.69013 -17.68288 -17.49123 -16.89739 -16.84081 -16.03827 -15.92316 -15.80801 -15.26317 -14.81120 -14.64842 -14.44920 -14.20075 -14.07829 -13.72173 -13.70109 -13.22617 -12.95474 -12.85744 -12.73373 -12.68350 -12.46327 -12.26132 -12.22794 -12.21409 -11.91386 -11.87957 -11.50923 -10.99250 -10.92371 -10.82635 -9.98426 -9.91787 -8.30090 -6.47266 -1.63184 -0.27568 -0.14957 0.29897 1.09224 1.19528 1.39079 1.44110 1.45710 1.55116 1.57174 2.11676 2.33322 2.55181 3.02592 3.05088 3.24365 3.30743 3.53531 3.59345 3.68336 3.88330 3.92780 4.22481 4.26187 4.33337 4.36739 4.47907 4.71215 4.78096 4.98631 5.06818 5.11919 5.17345 5.20454 5.40729 5.57254 5.70289 5.81172 6.40820 6.44980 6.62067 6.77237 7.20462 7.37101 8.82144 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011070 B = 0.002621 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.791300 B =10682.029098 C =13185.058592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.513 3.487 4 O -0.514 6.514 5 C -0.030 4.030 6 C -0.078 4.078 7 C -0.015 4.015 8 C -0.071 4.071 9 N 0.028 4.972 10 O -0.140 6.140 11 O -0.208 6.208 12 C 0.177 3.823 13 O -0.284 6.284 14 C 0.039 3.961 15 C 0.494 3.506 16 O -0.579 6.579 17 N -0.697 5.697 18 C 0.266 3.734 19 C -0.555 4.555 20 H 0.088 0.912 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.986 3.014 24 H -0.271 1.271 25 H -0.286 1.286 26 H -0.253 1.253 27 C -0.151 4.151 28 H 0.066 0.934 29 H 0.139 0.861 30 H 0.065 0.935 31 H 0.204 0.796 32 H 0.197 0.803 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.414 0.586 36 H -0.011 1.011 37 H -0.010 1.010 38 H 0.269 0.731 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.323 -29.401 -0.042 35.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.259 6.259 3 C 0.357 3.643 4 O -0.403 6.403 5 C -0.032 4.032 6 C -0.097 4.097 7 C -0.033 4.033 8 C -0.155 4.155 9 N 0.542 4.458 10 O -0.363 6.363 11 O -0.410 6.410 12 C 0.127 3.873 13 O -0.194 6.194 14 C -0.038 4.038 15 C 0.280 3.720 16 O -0.459 6.459 17 N -0.349 5.349 18 C 0.144 3.856 19 C -0.593 4.593 20 H 0.106 0.894 21 C -0.198 4.198 22 N -0.570 5.570 23 Si 0.809 3.191 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.177 1.177 27 C -0.171 4.171 28 H 0.084 0.916 29 H 0.157 0.843 30 H 0.084 0.916 31 H 0.221 0.779 32 H 0.214 0.786 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.250 0.750 36 H 0.007 0.993 37 H 0.008 0.992 38 H 0.078 0.922 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -19.047 -28.900 -0.048 34.612 hybrid contribution 0.108 1.532 0.014 1.535 sum -18.939 -27.369 -0.034 33.283 Atomic orbital electron populations 1.23701 0.73418 1.06382 1.02975 1.86518 1.25705 1.30407 1.83261 1.20895 0.88414 0.82223 0.72812 1.90906 1.66978 1.37001 1.45436 1.19324 0.90317 0.94145 0.99417 1.21763 0.90866 1.00002 0.97020 1.21340 0.95742 0.95092 0.91144 1.21200 0.78207 0.95878 1.20261 1.43837 1.04214 1.00331 0.97433 1.94427 1.65417 1.24886 1.51599 1.94822 1.73913 1.16095 1.56162 1.18687 0.91276 0.84612 0.92703 1.86522 1.35069 1.11732 1.86105 1.22924 0.92190 0.80891 1.07775 1.20695 0.88670 0.85495 0.77153 1.90766 1.17016 1.87293 1.50777 1.45989 1.11423 1.04771 1.72760 1.18609 0.90684 0.81890 0.94412 1.21600 0.94216 0.90472 1.52983 0.89357 1.26098 0.96575 1.03210 0.93869 1.70155 1.11951 1.25024 1.49856 0.85132 0.78454 0.76891 0.78580 1.19630 1.21144 1.17688 1.21484 0.90424 1.00919 1.04223 0.91569 0.84328 0.91580 0.77939 0.78606 0.84569 0.84583 0.74975 0.99258 0.99236 0.92239 0.80408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.56 113.37 1.20 1.32 16 2 O -0.34 -2.83 9.81 -56.28 -0.55 -3.38 16 3 C 0.51 6.54 7.90 70.33 0.56 7.09 16 4 O -0.51 -9.58 16.13 19.95 0.32 -9.26 16 5 C -0.03 -0.36 5.87 -20.11 -0.12 -0.47 16 6 C -0.08 -0.54 9.61 22.54 0.22 -0.33 16 7 C -0.01 -0.17 9.53 22.21 0.21 0.04 16 8 C -0.07 -1.57 6.87 36.53 0.25 -1.32 16 9 N 0.03 0.87 4.45 -46.10 -0.21 0.67 16 10 O -0.14 -3.97 18.43 18.88 0.35 -3.62 16 11 O -0.21 -8.44 17.22 25.64 0.44 -8.00 16 12 C 0.18 4.04 6.66 22.47 0.15 4.19 16 13 O -0.28 -8.89 7.66 -63.50 -0.49 -9.38 16 14 C 0.04 1.01 5.22 71.24 0.37 1.38 16 15 C 0.49 19.93 7.91 87.66 0.69 20.62 16 16 O -0.58 -30.82 16.50 16.01 0.26 -30.55 16 17 N -0.70 -28.50 5.55 -466.78 -2.59 -31.09 16 18 C 0.27 14.58 5.43 85.63 0.46 15.04 16 19 C -0.55 -29.72 9.28 25.60 0.24 -29.48 16 20 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 21 C 0.00 0.12 5.46 84.65 0.46 0.58 16 22 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 23 Si 0.99 41.99 29.54 68.60 2.03 44.02 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 27 C -0.15 -2.38 8.58 22.64 0.19 -2.18 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.14 -0.28 8.14 -2.38 -0.02 -0.30 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.20 -0.11 7.61 -2.91 -0.02 -0.13 16 32 H 0.20 1.17 7.60 -2.91 -0.02 1.15 16 33 H 0.14 2.41 7.66 -2.39 -0.02 2.39 16 34 H 0.14 2.41 7.66 -2.39 -0.02 2.39 16 35 H 0.41 13.07 8.32 -92.71 -0.77 12.30 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.18 2.34 5.88 -2.91 -0.02 2.33 16 Total: -1.00 -88.44 360.12 5.10 -83.34 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.36 Total: 6.95 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 4.89 Total: 16.49 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.51 Total: -86.60 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: 0.34 Total: -64.19 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -88.44 5.10 -83.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042176522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.221 kcal (2) G-P(sol) polarization free energy of solvation -88.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds