Wall clock time and date at job start Tue Mar 31 2020 20:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35921 * 116.99451 * 2 1 4 4 C 1.38861 * 119.98056 * 0.27602 * 3 2 1 5 5 C 1.38257 * 120.24333 * 180.27411 * 4 3 2 6 6 C 1.37996 * 120.21362 * 359.44807 * 5 4 3 7 7 N 1.48019 * 120.01916 * 180.25145 * 6 5 4 8 8 O 1.21798 * 120.00146 * 353.44879 * 7 6 5 9 9 O 1.21793 * 119.99991 * 173.44776 * 7 6 5 10 10 C 1.39615 * 119.95607 * 0.27801 * 6 5 4 11 11 C 1.47738 * 120.11702 * 180.02562 * 10 6 5 12 12 O 1.21473 * 119.99912 * 304.70249 * 11 10 6 13 13 O 1.34712 * 120.00245 * 124.70463 * 11 10 6 14 14 C 1.45197 * 117.00442 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47463 * 180.02562 * 14 13 11 16 16 O 1.21278 * 119.99550 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00013 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99829 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47188 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00214 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00482 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00528 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99415 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46965 * 90.00670 * 23 21 19 25 25 H 1.48504 * 109.47057 * 209.99813 * 23 21 19 26 26 H 1.48492 * 109.47331 * 330.00073 * 23 21 19 27 27 C 1.38436 * 119.97607 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47221 * 299.99105 * 1 2 3 29 29 H 1.08993 * 109.47255 * 59.99969 * 1 2 3 30 30 H 1.09004 * 109.46366 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.88009 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.89018 * 179.72710 * 5 4 3 33 33 H 1.09002 * 109.46862 * 300.00097 * 14 13 11 34 34 H 1.09003 * 109.47383 * 59.99697 * 14 13 11 35 35 H 0.97002 * 120.00376 * 0.02562 * 17 15 14 36 36 H 1.09002 * 109.47287 * 300.00082 * 18 17 15 37 37 H 1.08998 * 109.47138 * 60.00271 * 18 17 15 38 38 H 0.96993 * 119.99761 * 179.97438 * 22 21 19 39 39 H 1.07992 * 120.11241 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2892 2.3754 0.0058 5 6 1.9111 3.6102 0.0001 6 6 3.2885 3.6940 0.0001 7 7 3.9498 5.0183 -0.0003 8 8 3.2843 6.0313 -0.1211 9 8 5.1593 5.0950 0.1200 10 6 4.0578 2.5290 0.0000 11 6 5.5327 2.6146 0.0006 12 8 6.1047 3.2480 -0.8638 13 8 6.2433 1.9903 0.9597 14 6 7.6884 2.1170 0.8976 15 6 8.3091 1.3580 2.0421 16 8 7.6029 0.7688 2.8326 17 7 9.6487 1.3342 2.1871 18 6 10.2520 0.5968 3.3000 19 6 11.7519 0.7283 3.2354 20 1 12.2100 1.3032 2.4442 21 6 12.5394 0.1137 4.1857 22 7 13.8484 0.2280 4.1290 23 14 11.7471 -0.8813 5.5538 24 1 11.6031 -2.2938 5.1189 25 1 12.6008 -0.8217 6.7674 26 1 10.4077 -0.3194 5.8627 27 6 3.4285 1.2831 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2109 2.3161 0.0107 32 1 1.3169 4.5120 0.0002 33 1 8.0487 1.7085 -0.0466 34 1 7.9642 3.1693 0.9669 35 1 10.2135 1.8058 1.5550 36 1 9.8922 1.0056 4.2442 37 1 9.9759 -0.4554 3.2309 38 1 14.4023 -0.2040 4.7978 39 1 4.0181 0.3784 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064234165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:12 Heat of formation + Delta-G solvation = -118.156114 kcal Electronic energy + Delta-G solvation = -28229.624944 eV Core-core repulsion = 23721.351247 eV Total energy + Delta-G solvation = -4508.273697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.54106 -41.14846 -40.51691 -38.96065 -38.15905 -36.83961 -36.38150 -34.38666 -32.64562 -32.42328 -31.93802 -29.60772 -28.59294 -27.24511 -26.38117 -24.84887 -23.15015 -22.20785 -21.50909 -20.14726 -19.67062 -19.12403 -18.91692 -17.93012 -17.66065 -17.56643 -17.21910 -16.66583 -16.61370 -16.46066 -15.80615 -15.24688 -15.04724 -14.99476 -14.50188 -14.23533 -14.14382 -13.74951 -13.40567 -13.14903 -13.06897 -12.63400 -12.38290 -12.15371 -12.10477 -12.05595 -11.71926 -11.39656 -11.30948 -11.07843 -10.95218 -10.83250 -10.74965 -10.17869 -10.00380 -9.54263 -9.49577 -9.37055 -8.81820 -8.27870 -6.23741 -4.26812 -0.68551 0.01254 0.94178 1.03683 1.76902 1.92017 2.34440 2.63521 3.01181 3.25191 3.32000 3.39988 3.57756 3.64369 3.81750 4.01138 4.14052 4.30982 4.34133 4.40230 4.42798 4.66654 4.79077 4.86614 4.98296 5.03742 5.10794 5.15634 5.17401 5.23903 5.31440 5.99379 6.09593 6.30222 6.72292 7.00521 7.07886 7.30723 7.32283 7.41644 8.04172 8.41029 8.67214 8.79476 9.35182 10.88029 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002400 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.376072 B =11663.590561 C =13004.037081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.298 6.298 3 C 0.181 3.819 4 C -0.191 4.191 5 C -0.012 4.012 6 C -0.047 4.047 7 N 0.027 4.973 8 O -0.160 6.160 9 O -0.134 6.134 10 C 0.001 3.999 11 C 0.505 3.495 12 O -0.459 6.459 13 O -0.317 6.317 14 C 0.049 3.951 15 C 0.503 3.497 16 O -0.537 6.537 17 N -0.698 5.698 18 C 0.222 3.778 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.078 3.922 22 N -0.890 5.890 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.103 4.103 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.400 0.600 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.268 0.732 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.790 2.574 -11.414 32.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.209 6.209 3 C 0.133 3.867 4 C -0.210 4.210 5 C -0.031 4.031 6 C -0.131 4.131 7 N 0.548 4.452 8 O -0.374 6.374 9 O -0.353 6.353 10 C -0.002 4.002 11 C 0.345 3.655 12 O -0.344 6.344 13 O -0.232 6.232 14 C -0.028 4.028 15 C 0.286 3.714 16 O -0.415 6.415 17 N -0.348 5.348 18 C 0.101 3.899 19 C -0.584 4.584 20 H 0.099 0.901 21 C -0.126 4.126 22 N -0.527 5.527 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.185 1.185 27 C -0.122 4.122 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.176 0.824 32 H 0.184 0.816 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.234 0.766 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -31.148 1.435 -10.985 33.060 hybrid contribution 0.069 0.216 0.331 0.401 sum -31.079 1.651 -10.654 32.896 Atomic orbital electron populations 1.23333 0.76717 1.05415 1.02124 1.86210 1.22742 1.25308 1.86629 1.19118 0.91894 0.85199 0.90500 1.21451 1.01679 0.90512 1.07398 1.20761 0.90797 0.99995 0.91516 1.20890 0.93161 0.82277 1.16767 1.43364 1.01309 1.02302 0.98204 1.94518 1.64895 1.24687 1.53291 1.94672 0.95588 1.93238 1.51833 1.18584 0.91132 0.91893 0.98589 1.20492 0.87327 0.77068 0.80640 1.90951 1.70780 1.36408 1.36286 1.86616 1.20741 1.67302 1.48570 1.22963 0.76427 1.03283 1.00121 1.19871 0.83564 0.82047 0.85878 1.90701 1.61429 1.44962 1.44424 1.46055 1.04644 1.52658 1.31468 1.19561 0.93912 0.91612 0.84846 1.21067 0.88158 1.34754 1.14384 0.90058 1.24788 0.94681 0.95643 0.97464 1.69875 1.03721 1.43507 1.35629 0.86820 0.80122 0.81031 0.81741 1.19818 1.20847 1.18470 1.20580 0.92134 0.97172 1.02289 0.91628 0.91722 0.87044 0.82381 0.81645 0.87893 0.87400 0.76580 0.95398 0.95868 0.92186 0.81404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.03 9.81 101.05 0.99 1.02 16 2 O -0.30 -1.73 10.49 -19.49 -0.20 -1.94 16 3 C 0.18 1.20 6.68 -39.28 -0.26 0.93 16 4 C -0.19 -0.91 9.03 -39.34 -0.36 -1.27 16 5 C -0.01 -0.08 9.54 -39.66 -0.38 -0.46 16 6 C -0.05 -0.52 6.86 -79.52 -0.55 -1.06 16 7 N 0.03 0.38 4.45 34.17 0.15 0.53 16 8 O -0.16 -2.13 18.46 -29.46 -0.54 -2.68 16 9 O -0.13 -2.17 14.99 -37.09 -0.56 -2.72 16 10 C 0.00 0.01 5.76 -105.00 -0.60 -0.60 16 11 C 0.50 7.17 5.98 34.61 0.21 7.37 16 12 O -0.46 -7.30 14.55 -27.26 -0.40 -7.70 16 13 O -0.32 -4.90 9.77 -47.20 -0.46 -5.36 16 14 C 0.05 0.72 5.95 36.01 0.21 0.94 16 15 C 0.50 9.53 7.91 -10.99 -0.09 9.44 16 16 O -0.54 -12.26 16.50 -14.10 -0.23 -12.49 16 17 N -0.70 -13.77 5.55 -61.47 -0.34 -14.11 16 18 C 0.22 5.36 4.50 -5.19 -0.02 5.34 16 19 C -0.55 -14.75 9.83 -34.44 -0.34 -15.09 16 20 H 0.08 2.28 7.84 -52.48 -0.41 1.87 16 21 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 22 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 23 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 27 C -0.10 -0.90 9.73 -39.01 -0.38 -1.28 16 28 H 0.07 0.04 7.64 -51.93 -0.40 -0.36 16 29 H 0.06 0.02 7.67 -51.93 -0.40 -0.38 16 30 H 0.11 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.16 0.19 6.28 -52.49 -0.33 -0.14 16 32 H 0.17 0.76 7.62 -52.49 -0.40 0.36 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.40 6.81 8.32 -40.82 -0.34 6.47 16 36 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 37 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -36.48 354.90 -6.69 -43.17 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.90 Total: -0.50 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.66 Total: 7.39 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.58 Total: -39.03 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -2.39 Total: -32.89 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.48 -6.69 -43.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064234165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.982 kcal (2) G-P(sol) polarization free energy of solvation -36.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds