Wall clock time and date at job start Tue Mar 31 2020 20:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35921 * 116.99451 * 2 1 4 4 C 1.38861 * 119.98056 * 0.27602 * 3 2 1 5 5 C 1.38257 * 120.24333 * 180.27411 * 4 3 2 6 6 C 1.37996 * 120.21362 * 359.44807 * 5 4 3 7 7 N 1.48019 * 120.01916 * 180.25145 * 6 5 4 8 8 O 1.21798 * 120.00146 * 353.44879 * 7 6 5 9 9 O 1.21793 * 119.99991 * 173.44776 * 7 6 5 10 10 C 1.39615 * 119.95607 * 0.27801 * 6 5 4 11 11 C 1.47738 * 120.11702 * 180.02562 * 10 6 5 12 12 O 1.21473 * 119.99912 * 304.70249 * 11 10 6 13 13 O 1.34712 * 120.00245 * 124.70463 * 11 10 6 14 14 C 1.45197 * 117.00442 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47463 * 180.02562 * 14 13 11 16 16 O 1.21278 * 119.99550 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00013 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99829 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47188 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00214 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00482 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00528 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99415 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46965 * 90.00670 * 23 21 19 25 25 H 1.48504 * 109.47057 * 209.99813 * 23 21 19 26 26 H 1.48492 * 109.47331 * 330.00073 * 23 21 19 27 27 C 1.38436 * 119.97607 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47221 * 299.99105 * 1 2 3 29 29 H 1.08993 * 109.47255 * 59.99969 * 1 2 3 30 30 H 1.09004 * 109.46366 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.88009 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.89018 * 179.72710 * 5 4 3 33 33 H 1.09002 * 109.46862 * 300.00097 * 14 13 11 34 34 H 1.09003 * 109.47383 * 59.99697 * 14 13 11 35 35 H 0.97002 * 120.00376 * 0.02562 * 17 15 14 36 36 H 1.09002 * 109.47287 * 300.00082 * 18 17 15 37 37 H 1.08998 * 109.47138 * 60.00271 * 18 17 15 38 38 H 0.96993 * 119.99761 * 179.97438 * 22 21 19 39 39 H 1.07992 * 120.11241 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2892 2.3754 0.0058 5 6 1.9111 3.6102 0.0001 6 6 3.2885 3.6940 0.0001 7 7 3.9498 5.0183 -0.0003 8 8 3.2843 6.0313 -0.1211 9 8 5.1593 5.0950 0.1200 10 6 4.0578 2.5290 0.0000 11 6 5.5327 2.6146 0.0006 12 8 6.1047 3.2480 -0.8638 13 8 6.2433 1.9903 0.9597 14 6 7.6884 2.1170 0.8976 15 6 8.3091 1.3580 2.0421 16 8 7.6029 0.7688 2.8326 17 7 9.6487 1.3342 2.1871 18 6 10.2520 0.5968 3.3000 19 6 11.7519 0.7283 3.2354 20 1 12.2100 1.3032 2.4442 21 6 12.5394 0.1137 4.1857 22 7 13.8484 0.2280 4.1290 23 14 11.7471 -0.8813 5.5538 24 1 11.6031 -2.2938 5.1189 25 1 12.6008 -0.8217 6.7674 26 1 10.4077 -0.3194 5.8627 27 6 3.4285 1.2831 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2109 2.3161 0.0107 32 1 1.3169 4.5120 0.0002 33 1 8.0487 1.7085 -0.0466 34 1 7.9642 3.1693 0.9669 35 1 10.2135 1.8058 1.5550 36 1 9.8922 1.0056 4.2442 37 1 9.9759 -0.4554 3.2309 38 1 14.4023 -0.2040 4.7978 39 1 4.0181 0.3784 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064234165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:12 Heat of formation + Delta-G solvation = -143.419123 kcal Electronic energy + Delta-G solvation = -28230.720431 eV Core-core repulsion = 23721.351247 eV Total energy + Delta-G solvation = -4509.369184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.45506 -42.00096 -41.35495 -40.46208 -38.79792 -37.89361 -37.49966 -36.22717 -34.47648 -33.28500 -32.58084 -31.15451 -29.25022 -28.63958 -27.09795 -25.64693 -24.22279 -23.74402 -22.44362 -21.77221 -20.54732 -19.93379 -19.74121 -19.29323 -18.84334 -18.60232 -18.14705 -18.05832 -17.34466 -17.17588 -16.95846 -16.87520 -16.24875 -16.03865 -15.70376 -15.26846 -14.91296 -14.71040 -14.59570 -14.39128 -14.22859 -13.97060 -13.78882 -13.49433 -13.09521 -12.78158 -12.71006 -12.49209 -12.41319 -12.37529 -12.33755 -12.01608 -11.94391 -11.93198 -11.67517 -11.03386 -10.92658 -10.77549 -10.06782 -10.02097 -8.40057 -6.47883 -1.50937 -0.58623 0.10813 0.21259 0.75053 0.98900 1.33457 1.36126 1.46171 1.48885 1.87360 1.98378 2.27924 2.34165 2.95092 3.00814 3.20823 3.30448 3.52324 3.60415 3.69589 3.97557 4.01787 4.05337 4.27416 4.34413 4.41039 4.43769 4.65925 4.72659 4.81968 4.82432 4.92452 4.99428 5.14440 5.22698 5.37220 5.93554 6.04376 6.23754 6.37691 6.51647 6.68399 7.09305 7.24534 8.74551 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002400 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.376072 B =11663.590561 C =13004.037081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.311 6.311 3 C 0.192 3.808 4 C -0.166 4.166 5 C 0.002 3.998 6 C -0.071 4.071 7 N 0.029 4.971 8 O -0.135 6.135 9 O -0.213 6.213 10 C -0.024 4.024 11 C 0.507 3.493 12 O -0.484 6.484 13 O -0.333 6.333 14 C 0.057 3.943 15 C 0.508 3.492 16 O -0.576 6.576 17 N -0.695 5.695 18 C 0.232 3.768 19 C -0.549 4.549 20 H 0.061 0.939 21 C 0.026 3.974 22 N -0.930 5.930 23 Si 0.938 3.062 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.259 1.259 27 C -0.108 4.108 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.207 0.793 32 H 0.194 0.806 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.413 0.587 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.273 0.727 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.060 1.830 -11.694 37.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.222 6.222 3 C 0.143 3.857 4 C -0.184 4.184 5 C -0.017 4.017 6 C -0.155 4.155 7 N 0.544 4.456 8 O -0.359 6.359 9 O -0.415 6.415 10 C -0.026 4.026 11 C 0.348 3.652 12 O -0.370 6.370 13 O -0.249 6.249 14 C -0.020 4.020 15 C 0.294 3.706 16 O -0.456 6.456 17 N -0.347 5.347 18 C 0.109 3.891 19 C -0.587 4.587 20 H 0.079 0.921 21 C -0.175 4.175 22 N -0.569 5.569 23 Si 0.762 3.238 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.183 1.183 27 C -0.128 4.128 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.141 0.859 31 H 0.224 0.776 32 H 0.211 0.789 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.250 0.750 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -35.285 0.662 -11.281 37.050 hybrid contribution 1.106 0.394 0.336 1.221 sum -34.179 1.056 -10.944 35.904 Atomic orbital electron populations 1.23755 0.74207 1.07039 1.04012 1.86222 1.25296 1.24831 1.85835 1.19158 0.91134 0.86430 0.88964 1.21924 1.03662 0.88583 1.04270 1.21202 0.88870 1.02006 0.89594 1.21110 0.94491 0.80143 1.19769 1.43765 1.01080 1.03423 0.97362 1.94449 1.64422 1.25965 1.51110 1.94679 0.96894 1.93865 1.56063 1.18497 0.89322 0.93271 1.01559 1.20992 0.88528 0.75979 0.79655 1.90917 1.71599 1.37328 1.37147 1.86599 1.20826 1.67911 1.49524 1.22860 0.76636 1.03402 0.99083 1.20423 0.82782 0.81234 0.86194 1.90674 1.62170 1.46675 1.46130 1.45850 1.05426 1.52554 1.30846 1.19191 0.92216 0.91786 0.85878 1.21269 0.89700 1.33998 1.13687 0.92081 1.25609 0.95110 0.96814 0.99923 1.69981 1.05114 1.44888 1.36920 0.85847 0.79180 0.79793 0.79023 1.18794 1.19923 1.18326 1.20633 0.93670 0.96098 1.02366 0.89845 0.89555 0.85875 0.77640 0.78882 0.85121 0.85971 0.75014 0.96513 0.96326 0.91804 0.81463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -2.53 10.49 -92.66 -0.97 -3.50 16 3 C 0.19 1.93 6.68 22.47 0.15 2.08 16 4 C -0.17 -0.80 9.03 22.42 0.20 -0.59 16 5 C 0.00 0.02 9.54 22.22 0.21 0.23 16 6 C -0.07 -1.48 6.86 36.65 0.25 -1.23 16 7 N 0.03 0.82 4.45 -45.81 -0.20 0.61 16 8 O -0.13 -3.47 18.46 18.89 0.35 -3.13 16 9 O -0.21 -7.38 14.99 26.19 0.39 -6.99 16 10 C -0.02 -0.55 5.76 -20.11 -0.12 -0.66 16 11 C 0.51 14.97 5.98 70.33 0.42 15.39 16 12 O -0.48 -16.15 14.55 27.59 0.40 -15.74 16 13 O -0.33 -10.58 9.77 -49.83 -0.49 -11.07 16 14 C 0.06 1.68 5.95 71.24 0.42 2.11 16 15 C 0.51 19.39 7.91 87.66 0.69 20.08 16 16 O -0.58 -26.62 16.50 15.77 0.26 -26.36 16 17 N -0.70 -27.64 5.55 -466.79 -2.59 -30.23 16 18 C 0.23 11.30 4.50 85.63 0.38 11.68 16 19 C -0.55 -30.13 9.83 25.60 0.25 -29.87 16 20 H 0.06 3.52 7.84 -2.91 -0.02 3.50 16 21 C 0.03 1.46 5.47 84.65 0.46 1.92 16 22 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 23 Si 0.94 43.74 27.47 68.60 1.88 45.62 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 27 C -0.11 -1.80 9.73 22.64 0.22 -1.58 16 28 H 0.08 -0.36 7.64 -2.39 -0.02 -0.38 16 29 H 0.09 -0.44 7.67 -2.39 -0.02 -0.46 16 30 H 0.12 -0.40 8.14 -2.38 -0.02 -0.42 16 31 H 0.21 -0.96 6.28 -2.91 -0.02 -0.98 16 32 H 0.19 0.87 7.62 -2.91 -0.02 0.85 16 33 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.41 14.17 8.32 -92.71 -0.77 13.40 16 36 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 37 H 0.02 0.93 7.57 -2.39 -0.02 0.92 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -82.99 354.90 4.31 -78.68 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.31 Total: 6.70 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 4.67 Total: 20.66 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.49 Total: -84.88 kcal Atomic # 8 Polarization: -66.73 SS G_CDS: -0.06 Total: -66.79 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -82.99 4.31 -78.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064234165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.736 kcal (2) G-P(sol) polarization free energy of solvation -82.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds