Wall clock time and date at job start Tue Mar 31 2020 20:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35999 * 116.99709 * 2 1 4 4 C 1.38026 * 119.99140 * 359.97438 * 3 2 1 5 5 C 1.40043 * 119.82337 * 180.02562 * 4 3 2 6 6 C 1.46866 * 120.09353 * 179.97438 * 5 4 3 7 7 O 1.21296 * 119.99841 * 174.02685 * 6 5 4 8 8 C 1.40010 * 119.80653 * 0.27375 * 5 4 3 9 9 N 1.48013 * 120.00841 * 179.69979 * 8 5 4 10 10 O 1.21798 * 120.00365 * 305.61363 * 9 8 5 11 11 O 1.21807 * 119.99749 * 125.61794 * 9 8 5 12 12 C 1.37672 * 119.97291 * 359.40101 * 8 5 4 13 13 C 1.38924 * 120.18048 * 0.62636 * 12 8 5 14 14 O 1.35740 * 119.90332 * 179.69558 * 13 12 8 15 15 C 1.42907 * 117.00293 * 359.97438 * 14 13 12 16 16 C 1.50695 * 109.47196 * 179.97438 * 15 14 13 17 17 O 1.21296 * 120.00090 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00084 * 179.97438 * 16 15 14 19 19 C 1.46504 * 119.99927 * 0.02562 * 18 16 15 20 20 C 1.37099 * 120.00041 * 180.02562 * 18 16 15 21 21 H 1.07992 * 120.00139 * 24.93922 * 20 18 16 22 22 C 1.38954 * 119.99453 * 204.94038 * 20 18 16 23 23 N 1.31405 * 120.00640 * 5.40934 * 22 20 18 24 24 Si 1.86804 * 119.99414 * 185.41467 * 22 20 18 25 25 H 1.48495 * 109.47254 * 60.00003 * 24 22 20 26 26 H 1.48497 * 109.47003 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47204 * 299.99708 * 24 22 20 28 28 H 1.08999 * 109.46901 * 60.00263 * 1 2 3 29 29 H 1.08997 * 109.46931 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47131 * 300.00242 * 1 2 3 31 31 H 1.08002 * 120.08987 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.00346 * 354.30326 * 6 5 4 33 33 H 1.08004 * 119.91253 * 180.31693 * 12 8 5 34 34 H 1.09004 * 109.46487 * 299.99468 * 15 14 13 35 35 H 1.08999 * 109.46822 * 59.99426 * 15 14 13 36 36 H 1.09001 * 109.47309 * 94.90130 * 19 18 16 37 37 H 1.08998 * 109.47017 * 214.90690 * 19 18 16 38 38 H 1.09009 * 109.46563 * 334.90272 * 19 18 16 39 39 H 0.96993 * 120.00395 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2944 2.3692 -0.0005 5 6 1.9338 3.6152 -0.0011 6 6 1.1395 4.8505 -0.0022 7 8 1.6902 5.9257 0.1066 8 6 3.3324 3.6797 -0.0069 9 7 4.0128 4.9942 -0.0142 10 8 3.7438 5.8144 -0.8735 11 8 4.8417 5.2556 0.8392 12 6 4.0744 2.5201 0.0004 13 6 3.4394 1.2845 0.0005 14 8 4.1766 0.1448 0.0014 15 6 5.5981 0.2914 0.0019 16 6 6.2436 -1.0702 0.0036 17 8 5.5542 -2.0682 0.0039 18 7 7.5870 -1.1792 0.0037 19 6 8.4196 0.0262 0.0028 20 6 8.1742 -2.4181 0.0048 21 1 7.6393 -3.2696 -0.3889 22 6 9.4578 -2.5779 0.5124 23 7 10.0677 -1.5661 1.0877 24 14 10.3164 -4.2314 0.3769 25 1 10.4474 -4.6053 -1.0542 26 1 11.6655 -4.1403 0.9907 27 1 9.5187 -5.2631 1.0871 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2158 2.3142 -0.0005 32 1 0.0647 4.8014 -0.0955 33 1 5.1533 2.5711 0.0011 34 1 5.9070 0.8392 -0.8885 35 1 5.9064 0.8405 0.8916 36 1 8.6984 0.2761 1.0265 37 1 9.3196 -0.1544 -0.5851 38 1 7.8603 0.8537 -0.4339 39 1 10.9635 -1.6778 1.4423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068324628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:18 Heat of formation + Delta-G solvation = -82.068733 kcal Electronic energy + Delta-G solvation = -29079.437928 eV Core-core repulsion = 24572.729097 eV Total energy + Delta-G solvation = -4506.708831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.31166 -41.08050 -39.55213 -39.25418 -38.15257 -37.03997 -36.42464 -34.80166 -31.90654 -31.81833 -31.38565 -28.66653 -28.05860 -26.63745 -26.30351 -24.69509 -24.06845 -22.90034 -21.72240 -19.68525 -19.59942 -18.68117 -18.61957 -17.93437 -17.26692 -16.99231 -16.79981 -16.63359 -16.10664 -15.94084 -15.81113 -15.46808 -15.03773 -14.78618 -14.56229 -14.15438 -13.98904 -13.87414 -13.30675 -12.97879 -12.87107 -12.12654 -12.05780 -11.90967 -11.80309 -11.58897 -11.52303 -11.29052 -11.15485 -11.13288 -11.05175 -10.99560 -10.49410 -10.40713 -10.34130 -9.67618 -9.15079 -8.62691 -8.52359 -7.86537 -6.43676 -4.05862 -0.32355 0.19600 0.87620 1.23954 1.82843 2.61760 2.65019 2.87041 3.10825 3.18261 3.22250 3.47460 3.61067 3.81176 4.02223 4.19160 4.28061 4.57247 4.59533 4.65285 4.72961 4.73408 4.92722 4.96052 5.00710 5.11324 5.16150 5.23434 5.32414 5.52547 5.59937 6.06560 6.29526 6.53077 6.72302 6.80023 7.00402 7.09448 7.43133 7.61949 7.94775 8.30678 9.00865 9.20340 9.73611 10.58692 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.002936 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.459720 B = 9535.861844 C =11216.314330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.284 6.284 3 C 0.127 3.873 4 C -0.121 4.121 5 C -0.149 4.149 6 C 0.372 3.628 7 O -0.431 6.431 8 C 0.028 3.972 9 N 0.024 4.976 10 O -0.110 6.110 11 O -0.158 6.158 12 C -0.149 4.149 13 C 0.161 3.839 14 O -0.253 6.253 15 C 0.040 3.960 16 C 0.445 3.555 17 O -0.565 6.565 18 N -0.437 5.437 19 C 0.106 3.894 20 C -0.308 4.308 21 H 0.100 0.900 22 C 0.034 3.966 23 N -0.882 5.882 24 Si 0.933 3.067 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.271 1.271 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.165 0.835 32 H 0.123 0.877 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.022 0.978 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.974 9.307 -2.405 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.196 6.196 3 C 0.080 3.920 4 C -0.141 4.141 5 C -0.152 4.152 6 C 0.227 3.773 7 O -0.301 6.301 8 C -0.054 4.054 9 N 0.552 4.448 10 O -0.339 6.339 11 O -0.373 6.373 12 C -0.169 4.169 13 C 0.111 3.889 14 O -0.163 6.163 15 C -0.039 4.039 16 C 0.231 3.769 17 O -0.448 6.448 18 N -0.157 5.157 19 C -0.037 4.037 20 C -0.436 4.436 21 H 0.118 0.882 22 C -0.170 4.170 23 N -0.521 5.521 24 Si 0.759 3.241 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.182 0.818 32 H 0.139 0.861 33 H 0.180 0.820 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.071 8.307 -2.190 20.009 hybrid contribution 0.781 -0.159 0.041 0.798 sum -17.290 8.149 -2.149 19.234 Atomic orbital electron populations 1.23280 0.77619 1.05255 1.01465 1.86397 1.21718 1.24101 1.87420 1.18298 0.89101 0.86012 0.98621 1.21158 1.00896 0.88895 1.03155 1.20380 0.90800 0.97457 1.06530 1.24031 0.95310 0.85915 0.71995 1.90720 1.75657 1.31223 1.32514 1.20704 0.91876 0.83458 1.09385 1.43277 0.99692 1.01924 0.99866 1.94549 1.66603 1.42331 1.30417 1.94577 1.27332 1.83414 1.31940 1.20706 1.02121 0.88873 1.05206 1.18378 0.88958 0.85910 0.95678 1.86362 1.19206 1.25114 1.85574 1.22964 0.77321 1.00856 1.02715 1.19279 0.83368 0.88324 0.85884 1.90589 1.61848 1.37690 1.54656 1.43465 1.02522 1.07223 1.62493 1.21675 0.94727 0.84522 1.02780 1.19628 0.98455 0.86314 1.39164 0.88186 1.25427 0.97327 0.99266 0.94974 1.69942 1.14613 1.30848 1.36716 0.85889 0.78058 0.81355 0.78785 1.19750 1.20784 1.19623 0.92075 0.87232 0.92112 0.81758 0.86098 0.81956 0.89948 0.89405 0.91415 0.90797 0.95963 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.10 16 2 O -0.28 -3.28 10.28 -34.41 -0.35 -3.64 16 3 C 0.13 1.43 6.69 -39.19 -0.26 1.17 16 4 C -0.12 -0.94 8.78 -38.98 -0.34 -1.28 16 5 C -0.15 -1.48 5.87 -105.07 -0.62 -2.10 16 6 C 0.37 3.23 11.33 34.22 0.39 3.61 16 7 O -0.43 -5.78 13.94 -18.70 -0.26 -6.04 16 8 C 0.03 0.36 6.27 -79.49 -0.50 -0.14 16 9 N 0.02 0.37 3.48 34.18 0.12 0.49 16 10 O -0.11 -1.78 16.39 -37.13 -0.61 -2.38 16 11 O -0.16 -2.61 19.17 -29.46 -0.56 -3.18 16 12 C -0.15 -1.93 8.83 -39.53 -0.35 -2.28 16 13 C 0.16 2.23 6.71 -38.86 -0.26 1.97 16 14 O -0.25 -4.47 9.43 -46.61 -0.44 -4.91 16 15 C 0.04 0.70 3.70 36.00 0.13 0.83 16 16 C 0.45 10.56 7.70 -10.99 -0.08 10.48 16 17 O -0.56 -15.65 16.22 -14.36 -0.23 -15.88 16 18 N -0.44 -10.77 3.02 -122.19 -0.37 -11.14 16 19 C 0.11 2.24 8.55 59.85 0.51 2.75 16 20 C -0.31 -8.32 9.26 -14.93 -0.14 -8.46 16 21 H 0.10 2.82 7.43 -52.49 -0.39 2.43 16 22 C 0.03 0.86 5.24 -17.47 -0.09 0.77 16 23 N -0.88 -22.60 10.44 55.50 0.58 -22.02 16 24 Si 0.93 20.17 29.56 -169.99 -5.02 15.15 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 29 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.17 0.52 6.28 -52.49 -0.33 0.19 16 32 H 0.12 0.39 8.06 -52.49 -0.42 -0.03 16 33 H 0.16 1.98 6.27 -52.48 -0.33 1.65 16 34 H 0.08 1.22 6.93 -51.93 -0.36 0.86 16 35 H 0.09 1.36 7.61 -51.93 -0.40 0.97 16 36 H 0.07 1.49 7.36 -51.93 -0.38 1.10 16 37 H 0.07 1.64 7.25 -51.93 -0.38 1.26 16 38 H 0.02 0.37 6.27 -51.92 -0.33 0.04 16 39 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -35.72 347.22 -6.21 -41.93 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -3.66 Total: -2.03 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -0.62 Total: 8.42 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.33 Total: -32.67 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -2.46 Total: -36.03 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.72 -6.21 -41.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068324628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.139 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds