Wall clock time and date at job start Tue Mar 31 2020 20:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35999 * 116.99709 * 2 1 4 4 C 1.38026 * 119.99140 * 359.97438 * 3 2 1 5 5 C 1.40043 * 119.82337 * 180.02562 * 4 3 2 6 6 C 1.46866 * 120.09353 * 179.97438 * 5 4 3 7 7 O 1.21296 * 119.99841 * 174.02685 * 6 5 4 8 8 C 1.40010 * 119.80653 * 0.27375 * 5 4 3 9 9 N 1.48013 * 120.00841 * 179.69979 * 8 5 4 10 10 O 1.21798 * 120.00365 * 305.61363 * 9 8 5 11 11 O 1.21807 * 119.99749 * 125.61794 * 9 8 5 12 12 C 1.37672 * 119.97291 * 359.40101 * 8 5 4 13 13 C 1.38924 * 120.18048 * 0.62636 * 12 8 5 14 14 O 1.35740 * 119.90332 * 179.69558 * 13 12 8 15 15 C 1.42907 * 117.00293 * 359.97438 * 14 13 12 16 16 C 1.50695 * 109.47196 * 179.97438 * 15 14 13 17 17 O 1.21296 * 120.00090 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00084 * 179.97438 * 16 15 14 19 19 C 1.46504 * 119.99927 * 0.02562 * 18 16 15 20 20 C 1.37099 * 120.00041 * 180.02562 * 18 16 15 21 21 H 1.07992 * 120.00139 * 24.93922 * 20 18 16 22 22 C 1.38954 * 119.99453 * 204.94038 * 20 18 16 23 23 N 1.31405 * 120.00640 * 5.40934 * 22 20 18 24 24 Si 1.86804 * 119.99414 * 185.41467 * 22 20 18 25 25 H 1.48495 * 109.47254 * 60.00003 * 24 22 20 26 26 H 1.48497 * 109.47003 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47204 * 299.99708 * 24 22 20 28 28 H 1.08999 * 109.46901 * 60.00263 * 1 2 3 29 29 H 1.08997 * 109.46931 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47131 * 300.00242 * 1 2 3 31 31 H 1.08002 * 120.08987 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.00346 * 354.30326 * 6 5 4 33 33 H 1.08004 * 119.91253 * 180.31693 * 12 8 5 34 34 H 1.09004 * 109.46487 * 299.99468 * 15 14 13 35 35 H 1.08999 * 109.46822 * 59.99426 * 15 14 13 36 36 H 1.09001 * 109.47309 * 94.90130 * 19 18 16 37 37 H 1.08998 * 109.47017 * 214.90690 * 19 18 16 38 38 H 1.09009 * 109.46563 * 334.90272 * 19 18 16 39 39 H 0.96993 * 120.00395 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2944 2.3692 -0.0005 5 6 1.9338 3.6152 -0.0011 6 6 1.1395 4.8505 -0.0022 7 8 1.6902 5.9257 0.1066 8 6 3.3324 3.6797 -0.0069 9 7 4.0128 4.9942 -0.0142 10 8 3.7438 5.8144 -0.8735 11 8 4.8417 5.2556 0.8392 12 6 4.0744 2.5201 0.0004 13 6 3.4394 1.2845 0.0005 14 8 4.1766 0.1448 0.0014 15 6 5.5981 0.2914 0.0019 16 6 6.2436 -1.0702 0.0036 17 8 5.5542 -2.0682 0.0039 18 7 7.5870 -1.1792 0.0037 19 6 8.4196 0.0262 0.0028 20 6 8.1742 -2.4181 0.0048 21 1 7.6393 -3.2696 -0.3889 22 6 9.4578 -2.5779 0.5124 23 7 10.0677 -1.5661 1.0877 24 14 10.3164 -4.2314 0.3769 25 1 10.4474 -4.6053 -1.0542 26 1 11.6655 -4.1403 0.9907 27 1 9.5187 -5.2631 1.0871 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2158 2.3142 -0.0005 32 1 0.0647 4.8014 -0.0955 33 1 5.1533 2.5711 0.0011 34 1 5.9070 0.8392 -0.8885 35 1 5.9064 0.8405 0.8916 36 1 8.6984 0.2761 1.0265 37 1 9.3196 -0.1544 -0.5851 38 1 7.8603 0.8537 -0.4339 39 1 10.9635 -1.6778 1.4423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068324628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:17 Heat of formation + Delta-G solvation = -105.239552 kcal Electronic energy + Delta-G solvation = -29080.442690 eV Core-core repulsion = 24572.729097 eV Total energy + Delta-G solvation = -4507.713593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.38072 -42.05687 -40.76925 -40.21413 -39.54544 -38.02676 -37.59284 -36.73583 -33.81599 -32.69938 -32.37024 -30.10215 -28.74196 -28.04543 -27.52155 -26.30875 -25.18253 -23.84721 -22.57458 -21.22819 -20.74257 -19.84545 -19.47080 -19.02365 -18.94739 -18.31534 -17.82609 -17.70356 -17.46780 -17.11192 -16.78158 -16.53918 -16.18537 -15.92977 -15.66150 -15.56345 -15.52037 -14.76492 -14.47349 -14.10051 -13.98771 -13.65363 -13.45527 -13.32449 -13.06910 -12.80982 -12.75349 -12.56319 -12.55579 -12.37405 -12.28827 -12.24983 -12.24493 -12.15298 -11.10518 -11.08385 -10.53904 -10.47628 -9.81695 -9.46404 -8.38822 -6.10285 -1.26552 -0.67341 -0.19531 0.21839 1.09627 1.35645 1.36485 1.45261 1.55733 1.81754 1.96327 2.06968 2.26444 2.79978 2.94598 3.01655 3.07386 3.27666 3.48610 3.67157 3.83640 3.92784 3.95076 3.99421 4.08815 4.18071 4.42867 4.46076 4.48624 4.50722 4.79874 4.83765 4.96540 5.17112 5.33617 5.37513 5.60412 5.99415 6.14710 6.18595 6.37483 6.40337 7.05248 7.29153 7.83573 8.61196 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.002936 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.459720 B = 9535.861844 C =11216.314330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.318 6.318 3 C 0.131 3.869 4 C -0.086 4.086 5 C -0.140 4.140 6 C 0.380 3.620 7 O -0.481 6.481 8 C -0.003 4.003 9 N 0.027 4.973 10 O -0.117 6.117 11 O -0.194 6.194 12 C -0.145 4.145 13 C 0.126 3.874 14 O -0.286 6.286 15 C 0.056 3.944 16 C 0.435 3.565 17 O -0.616 6.616 18 N -0.451 5.451 19 C 0.114 3.886 20 C -0.348 4.348 21 H 0.075 0.925 22 C 0.002 3.998 23 N -0.894 5.894 24 Si 0.993 3.007 25 H -0.266 1.266 26 H -0.268 1.268 27 H -0.276 1.276 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.196 0.804 33 H 0.161 0.839 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.774 10.204 -2.676 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.105 4.105 5 C -0.142 4.142 6 C 0.239 3.761 7 O -0.354 6.354 8 C -0.085 4.085 9 N 0.552 4.448 10 O -0.348 6.348 11 O -0.403 6.403 12 C -0.164 4.164 13 C 0.077 3.923 14 O -0.197 6.197 15 C -0.022 4.022 16 C 0.223 3.777 17 O -0.503 6.503 18 N -0.171 5.171 19 C -0.029 4.029 20 C -0.475 4.475 21 H 0.093 0.907 22 C -0.200 4.200 23 N -0.532 5.532 24 Si 0.816 3.184 25 H -0.190 1.190 26 H -0.193 1.193 27 H -0.202 1.202 28 H 0.109 0.891 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.241 0.759 32 H 0.212 0.788 33 H 0.178 0.822 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.845 9.244 -2.429 22.931 hybrid contribution 1.416 -0.447 0.106 1.489 sum -19.428 8.797 -2.323 21.453 Atomic orbital electron populations 1.23733 0.74531 1.06670 1.04179 1.86379 1.25056 1.24579 1.87102 1.18560 0.88347 0.87297 0.97464 1.21676 1.03133 0.86181 0.99489 1.20993 0.89566 0.99505 1.04165 1.25119 0.97663 0.83954 0.69341 1.90735 1.76930 1.32883 1.34868 1.20891 0.93304 0.81720 1.12542 1.43594 0.99308 1.02700 0.99192 1.94517 1.66404 1.43503 1.30361 1.94562 1.28764 1.84283 1.32648 1.20618 1.02191 0.88773 1.04861 1.18614 0.89949 0.84851 0.98856 1.86285 1.18721 1.27448 1.87272 1.22640 0.78091 0.96621 1.04858 1.20242 0.83005 0.90323 0.84135 1.90534 1.62962 1.40229 1.56571 1.43718 1.03483 1.07528 1.62357 1.21640 0.94498 0.84548 1.02191 1.19616 0.99546 0.87092 1.41295 0.90749 1.26157 0.97203 1.02611 0.94071 1.70021 1.14870 1.32072 1.36201 0.84998 0.77245 0.77130 0.79008 1.19041 1.19260 1.20181 0.89119 0.86884 0.89361 0.75869 0.78799 0.82181 0.87195 0.87562 0.92551 0.92290 0.91422 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.13 16 2 O -0.32 -6.63 10.28 -79.51 -0.82 -7.45 16 3 C 0.13 2.61 6.69 22.52 0.15 2.76 16 4 C -0.09 -0.89 8.78 22.66 0.20 -0.70 16 5 C -0.14 -2.26 5.87 -20.15 -0.12 -2.37 16 6 C 0.38 4.85 11.33 70.08 0.79 5.64 16 7 O -0.48 -11.79 13.94 20.10 0.28 -11.51 16 8 C 0.00 -0.07 6.27 36.67 0.23 0.16 16 9 N 0.03 0.84 3.48 -45.76 -0.16 0.68 16 10 O -0.12 -3.75 16.39 26.23 0.43 -3.32 16 11 O -0.19 -6.59 19.17 18.88 0.36 -6.23 16 12 C -0.14 -3.66 8.83 22.30 0.20 -3.46 16 13 C 0.13 3.39 6.71 22.74 0.15 3.54 16 14 O -0.29 -10.27 9.43 -64.18 -0.61 -10.88 16 15 C 0.06 1.97 3.70 71.23 0.26 2.24 16 16 C 0.43 21.37 7.70 87.66 0.68 22.05 16 17 O -0.62 -35.93 16.22 15.96 0.26 -35.67 16 18 N -0.45 -22.97 3.02 -658.87 -1.99 -24.96 16 19 C 0.11 4.83 8.55 127.77 1.09 5.92 16 20 C -0.35 -19.57 9.26 84.04 0.78 -18.79 16 21 H 0.07 4.45 7.43 -2.91 -0.02 4.43 16 22 C 0.00 0.11 5.24 84.93 0.45 0.56 16 23 N -0.89 -46.17 10.44 21.66 0.23 -45.95 16 24 Si 0.99 41.79 29.56 68.60 2.03 43.81 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 28 H 0.09 0.11 7.66 -2.39 -0.02 0.09 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.14 7.66 -2.39 -0.02 0.13 16 31 H 0.22 -0.43 6.28 -2.91 -0.02 -0.45 16 32 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 33 H 0.16 3.92 6.27 -2.91 -0.02 3.90 16 34 H 0.11 3.20 6.93 -2.38 -0.02 3.18 16 35 H 0.11 3.30 7.61 -2.39 -0.02 3.28 16 36 H 0.06 2.50 7.36 -2.39 -0.02 2.48 16 37 H 0.06 2.65 7.25 -2.39 -0.02 2.63 16 38 H 0.07 2.20 6.27 -2.38 -0.01 2.19 16 39 H 0.28 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -86.12 347.22 7.11 -79.00 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.13 Total: 3.79 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 5.97 Total: 18.67 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -1.92 Total: -70.23 kcal Atomic # 8 Polarization: -74.96 SS G_CDS: -0.09 Total: -75.06 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -86.12 7.11 -79.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068324628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.236 kcal (2) G-P(sol) polarization free energy of solvation -86.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds