Wall clock time and date at job start Tue Mar 31 2020 20:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48503 * 109.46873 * 240.00203 * 3 2 1 5 5 H 1.48499 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47191 * 120.00065 * 3 2 1 7 7 C 1.37877 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00625 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47330 * 180.02562 * 9 7 2 11 11 S 1.81002 * 109.47246 * 180.02562 * 10 9 7 12 12 C 1.76200 * 100.00064 * 180.02562 * 11 10 9 13 13 N 1.31289 * 126.48411 * 359.97042 * 12 11 10 14 14 N 1.28520 * 109.85682 * 179.97438 * 13 12 11 15 15 C 1.30304 * 110.08027 * 0.02562 * 14 13 12 16 16 C 1.50700 * 126.34445 * 179.97438 * 15 14 13 17 17 O 1.42896 * 109.47191 * 90.02607 * 16 15 14 18 18 C 1.35941 * 117.00491 * 180.02562 * 17 16 15 19 19 C 1.38707 * 120.03483 * 180.02562 * 18 17 16 20 20 C 1.38155 * 119.96876 * 180.30406 * 19 18 17 21 21 C 1.38449 * 120.03116 * 359.46154 * 20 19 18 22 22 F 1.35099 * 119.97156 * 180.26024 * 21 20 19 23 23 C 1.38458 * 120.05965 * 0.51158 * 21 20 19 24 24 C 1.38155 * 120.02984 * 359.77142 * 23 21 20 25 25 N 1.36537 * 126.48436 * 180.24828 * 12 11 10 26 26 N 1.36601 * 127.14407 * 0.02562 * 25 12 11 27 27 H 0.96997 * 120.00107 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46789 * 60.00070 * 9 7 2 29 29 H 1.08998 * 109.47312 * 300.00609 * 9 7 2 30 30 H 1.09006 * 109.47260 * 60.00197 * 10 9 7 31 31 H 1.08998 * 109.47289 * 300.00462 * 10 9 7 32 32 H 1.09002 * 109.46756 * 330.02798 * 16 15 14 33 33 H 1.09002 * 109.46941 * 210.02926 * 16 15 14 34 34 H 1.08002 * 120.01083 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.97841 * 179.72327 * 20 19 18 36 36 H 1.08004 * 119.98763 * 179.74539 * 23 21 20 37 37 H 1.07996 * 120.00989 * 179.97438 * 24 23 21 38 38 H 1.00903 * 110.99994 * 270.15263 * 26 25 12 39 39 H 1.00902 * 111.00020 * 34.10448 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3405 -5.2296 -0.0013 12 6 2.6903 -6.3621 -0.0004 13 7 3.9669 -6.0552 0.0000 14 7 4.6739 -7.1284 0.0012 15 6 3.8980 -8.1753 0.0010 16 6 4.3414 -9.6156 0.0016 17 8 4.4803 -10.0707 1.3491 18 6 4.8771 -11.3585 1.5278 19 6 5.0316 -11.8659 2.8095 20 6 5.4411 -13.1730 2.9896 21 6 5.6864 -13.9798 1.8915 22 9 6.0817 -15.2594 2.0690 23 6 5.5321 -13.4748 0.6116 24 6 5.1284 -12.1663 0.4285 25 7 2.6067 -7.7249 -0.0053 26 7 1.4693 -8.4814 -0.0123 27 1 -0.4850 0.8400 -0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6043 0.8895 31 1 2.8722 -3.6042 -0.8904 32 1 5.2994 -9.7010 -0.5113 33 1 3.5982 -10.2247 -0.5129 34 1 4.8362 -11.2380 3.6662 35 1 5.5657 -13.5668 3.9874 36 1 5.7277 -14.1040 -0.2442 37 1 5.0085 -11.7727 -0.5699 38 1 1.1631 -8.6828 0.9278 39 1 0.7384 -8.0305 -0.5419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071844640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:31 Heat of formation + Delta-G solvation = 40.105586 kcal Electronic energy + Delta-G solvation = -24622.996150 eV Core-core repulsion = 20609.003607 eV Total energy + Delta-G solvation = -4013.992543 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.20006 -43.10486 -40.52520 -37.72137 -36.65392 -33.84217 -32.32320 -31.62496 -31.02986 -29.92629 -29.69682 -27.43228 -25.36952 -23.66541 -23.22741 -22.71785 -21.56262 -21.08958 -18.91456 -18.72200 -17.88336 -17.53457 -17.08815 -16.90002 -16.61808 -16.08533 -15.70468 -15.45200 -15.26334 -15.04040 -14.56661 -14.16556 -13.95641 -13.88675 -13.58860 -13.46195 -12.92198 -12.71997 -12.26479 -12.11212 -11.80507 -11.54309 -11.38430 -11.35655 -11.10831 -10.79843 -10.71735 -10.53278 -10.26945 -10.01767 -9.82992 -9.77820 -9.67109 -9.28868 -8.56244 -8.50325 -7.56481 -6.14979 -4.19582 0.67714 0.75710 1.07775 1.24672 2.01229 2.39068 2.50111 3.00529 3.10498 3.28585 3.32570 3.36189 3.77129 3.89372 4.19370 4.28016 4.31604 4.36991 4.49855 4.62187 4.74335 4.86493 5.11851 5.21529 5.21743 5.33588 5.39126 5.64009 5.68584 5.70026 5.74179 5.86732 6.05955 6.13481 6.21566 6.54593 6.83178 7.11554 7.37007 7.42569 7.80291 8.15203 8.44009 8.84636 9.45295 10.95819 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.035458 B = 0.001713 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.477882 B =16345.631372 C =16627.945974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.035 3.965 10 C -0.068 4.068 11 S -0.037 6.037 12 C 0.149 3.851 13 N -0.277 5.277 14 N -0.251 5.251 15 C 0.187 3.813 16 C 0.160 3.840 17 O -0.306 6.306 18 C 0.129 3.871 19 C -0.121 4.121 20 C -0.112 4.112 21 C 0.057 3.943 22 F -0.142 7.142 23 C -0.111 4.111 24 C -0.181 4.181 25 N -0.303 5.303 26 N -0.584 5.584 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.367 0.633 39 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.493 -28.280 1.725 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.217 4.217 11 S 0.193 5.807 12 C -0.225 4.225 13 N -0.123 5.123 14 N -0.095 5.095 15 C -0.082 4.082 16 C 0.083 3.917 17 O -0.218 6.218 18 C 0.083 3.917 19 C -0.140 4.140 20 C -0.131 4.131 21 C 0.038 3.962 22 F -0.121 7.121 23 C -0.129 4.129 24 C -0.200 4.200 25 N -0.086 5.086 26 N -0.216 5.216 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.185 0.815 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.805 -28.026 1.507 28.660 hybrid contribution -0.040 0.787 0.293 0.841 sum 5.766 -27.239 1.800 27.900 Atomic orbital electron populations 1.69945 1.06102 1.27197 1.49791 1.25000 0.94933 0.99408 0.94790 0.86522 0.79487 0.82384 0.78877 1.20012 1.21165 1.20017 1.20993 0.93255 0.89659 1.52147 0.91999 1.19006 0.93374 0.89398 0.98633 1.24064 1.01817 0.89640 1.06137 1.85672 1.03166 1.00296 1.91596 1.27903 1.01640 0.86329 1.06670 1.74875 0.98139 1.19052 1.20219 1.74093 1.25433 0.94148 1.15821 1.23906 0.78796 0.97187 1.08348 1.20655 1.02495 0.85911 0.82674 1.86139 1.82415 1.24881 1.28406 1.18966 0.95306 0.83345 0.94110 1.20316 1.03111 0.95143 0.95425 1.20972 1.00056 0.93242 0.98786 1.17595 1.04464 0.79955 0.94235 1.91497 1.88730 1.35621 1.96223 1.20951 1.00029 0.95874 0.96087 1.21161 1.05586 0.94399 0.98806 1.45115 1.04625 1.02763 1.56142 1.59800 1.01508 1.38360 1.21899 0.92624 0.95320 0.95366 0.89329 0.89301 0.88181 0.88875 0.84001 0.83969 0.84321 0.84193 0.81485 0.80210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.09 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.04 0.86 4.98 -27.89 -0.14 0.73 16 10 C -0.07 -1.38 5.17 37.15 0.19 -1.19 16 11 S -0.04 -0.60 21.98 -107.50 -2.36 -2.97 16 12 C 0.15 2.42 8.13 -88.34 -0.72 1.71 16 13 N -0.28 -5.16 11.60 30.68 0.36 -4.80 16 14 N -0.25 -4.27 12.17 33.00 0.40 -3.87 16 15 C 0.19 2.51 7.81 -153.99 -1.20 1.31 16 16 C 0.16 1.47 5.28 36.01 0.19 1.66 16 17 O -0.31 -3.12 10.12 -19.56 -0.20 -3.32 16 18 C 0.13 1.10 6.69 -39.23 -0.26 0.83 16 19 C -0.12 -0.94 9.99 -39.44 -0.39 -1.33 16 20 C -0.11 -0.79 10.02 -39.53 -0.40 -1.19 16 21 C 0.06 0.45 7.30 -39.42 -0.29 0.16 16 22 F -0.14 -1.25 17.27 2.25 0.04 -1.21 16 23 C -0.11 -0.76 10.02 -39.53 -0.40 -1.15 16 24 C -0.18 -1.25 9.04 -39.44 -0.36 -1.61 16 25 N -0.30 -3.93 3.81 -9.93 -0.04 -3.97 16 26 N -0.58 -5.13 10.39 60.35 0.63 -4.51 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.82 8.14 -51.91 -0.42 1.40 16 31 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 32 H 0.10 0.76 7.66 -51.93 -0.40 0.36 16 33 H 0.09 0.65 7.66 -51.93 -0.40 0.25 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.14 0.68 6.30 -52.49 -0.33 0.35 16 38 H 0.37 2.60 9.21 -181.36 -1.67 0.93 16 39 H 0.38 2.94 8.81 -181.36 -1.60 1.34 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -32.17 362.90 -11.06 -43.23 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.89 Total: -2.27 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -4.18 Total: -12.90 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 2.08 Total: -42.07 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: -0.20 Total: -3.32 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -2.36 Total: -2.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.17 -11.06 -43.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071844640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.337 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds