Wall clock time and date at job start Tue Mar 31 2020 20:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48503 * 109.46873 * 240.00203 * 3 2 1 5 5 H 1.48499 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47191 * 120.00065 * 3 2 1 7 7 C 1.37877 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00625 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47330 * 180.02562 * 9 7 2 11 11 S 1.81002 * 109.47246 * 180.02562 * 10 9 7 12 12 C 1.76200 * 100.00064 * 180.02562 * 11 10 9 13 13 N 1.31289 * 126.48411 * 359.97042 * 12 11 10 14 14 N 1.28520 * 109.85682 * 179.97438 * 13 12 11 15 15 C 1.30304 * 110.08027 * 0.02562 * 14 13 12 16 16 C 1.50700 * 126.34445 * 179.97438 * 15 14 13 17 17 O 1.42896 * 109.47191 * 90.02607 * 16 15 14 18 18 C 1.35941 * 117.00491 * 180.02562 * 17 16 15 19 19 C 1.38707 * 120.03483 * 180.02562 * 18 17 16 20 20 C 1.38155 * 119.96876 * 180.30406 * 19 18 17 21 21 C 1.38449 * 120.03116 * 359.46154 * 20 19 18 22 22 F 1.35099 * 119.97156 * 180.26024 * 21 20 19 23 23 C 1.38458 * 120.05965 * 0.51158 * 21 20 19 24 24 C 1.38155 * 120.02984 * 359.77142 * 23 21 20 25 25 N 1.36537 * 126.48436 * 180.24828 * 12 11 10 26 26 N 1.36601 * 127.14407 * 0.02562 * 25 12 11 27 27 H 0.96997 * 120.00107 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46789 * 60.00070 * 9 7 2 29 29 H 1.08998 * 109.47312 * 300.00609 * 9 7 2 30 30 H 1.09006 * 109.47260 * 60.00197 * 10 9 7 31 31 H 1.08998 * 109.47289 * 300.00462 * 10 9 7 32 32 H 1.09002 * 109.46756 * 330.02798 * 16 15 14 33 33 H 1.09002 * 109.46941 * 210.02926 * 16 15 14 34 34 H 1.08002 * 120.01083 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.97841 * 179.72327 * 20 19 18 36 36 H 1.08004 * 119.98763 * 179.74539 * 23 21 20 37 37 H 1.07996 * 120.00989 * 179.97438 * 24 23 21 38 38 H 1.00903 * 110.99994 * 270.15263 * 26 25 12 39 39 H 1.00902 * 111.00020 * 34.10448 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3405 -5.2296 -0.0013 12 6 2.6903 -6.3621 -0.0004 13 7 3.9669 -6.0552 0.0000 14 7 4.6739 -7.1284 0.0012 15 6 3.8980 -8.1753 0.0010 16 6 4.3414 -9.6156 0.0016 17 8 4.4803 -10.0707 1.3491 18 6 4.8771 -11.3585 1.5278 19 6 5.0316 -11.8659 2.8095 20 6 5.4411 -13.1730 2.9896 21 6 5.6864 -13.9798 1.8915 22 9 6.0817 -15.2594 2.0690 23 6 5.5321 -13.4748 0.6116 24 6 5.1284 -12.1663 0.4285 25 7 2.6067 -7.7249 -0.0053 26 7 1.4693 -8.4814 -0.0123 27 1 -0.4850 0.8400 -0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6043 0.8895 31 1 2.8722 -3.6042 -0.8904 32 1 5.2994 -9.7010 -0.5113 33 1 3.5982 -10.2247 -0.5129 34 1 4.8362 -11.2380 3.6662 35 1 5.5657 -13.5668 3.9874 36 1 5.7277 -14.1040 -0.2442 37 1 5.0085 -11.7727 -0.5699 38 1 1.1631 -8.6828 0.9278 39 1 0.7384 -8.0305 -0.5419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071844640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:30 Heat of formation + Delta-G solvation = 21.661849 kcal Electronic energy + Delta-G solvation = -24623.795931 eV Core-core repulsion = 20609.003607 eV Total energy + Delta-G solvation = -4014.792324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.81671 -44.24416 -41.14762 -38.34336 -37.64461 -35.83741 -33.31010 -32.94901 -32.19814 -30.90187 -30.37822 -28.32771 -27.30370 -24.52775 -24.19887 -23.41736 -23.12168 -22.23761 -19.78249 -19.53331 -18.71631 -18.64573 -18.28181 -17.97665 -17.76262 -16.81877 -16.53869 -16.39737 -16.37164 -16.10645 -15.73591 -15.56610 -15.40921 -14.69749 -14.32027 -14.12383 -14.03225 -13.79871 -13.54944 -13.37267 -13.05331 -12.98116 -12.71890 -12.51935 -12.32894 -12.13503 -11.96306 -11.90612 -11.75596 -11.63632 -11.31679 -11.22473 -10.77967 -10.60237 -10.18711 -9.16310 -8.87610 -8.25002 -6.36769 -0.18732 0.15739 0.16694 0.18305 0.94611 1.02581 1.28586 1.42860 1.44529 1.52877 2.17190 2.40599 2.55688 2.94825 3.09359 3.33164 3.42752 3.64586 3.74687 3.81036 4.00115 4.11542 4.15199 4.19263 4.29785 4.32314 4.41367 4.58185 4.68073 4.78364 4.90647 5.11955 5.14376 5.19442 5.33696 5.42114 5.45545 5.66096 5.70989 6.09349 6.17010 6.24076 6.75008 7.25809 7.32415 8.86073 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.035458 B = 0.001713 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.477882 B =16345.631372 C =16627.945974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.043 3.957 10 C -0.067 4.067 11 S 0.009 5.991 12 C 0.132 3.868 13 N -0.316 5.316 14 N -0.290 5.290 15 C 0.205 3.795 16 C 0.160 3.840 17 O -0.324 6.324 18 C 0.114 3.886 19 C -0.130 4.130 20 C -0.112 4.112 21 C 0.041 3.959 22 F -0.150 7.150 23 C -0.111 4.111 24 C -0.177 4.177 25 N -0.296 5.296 26 N -0.570 5.570 27 H 0.267 0.733 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.381 0.619 39 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 -29.999 1.353 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.004 3.996 10 C -0.216 4.216 11 S 0.239 5.761 12 C -0.244 4.244 13 N -0.161 5.161 14 N -0.133 5.133 15 C -0.066 4.066 16 C 0.083 3.917 17 O -0.237 6.237 18 C 0.069 3.931 19 C -0.149 4.149 20 C -0.131 4.131 21 C 0.021 3.979 22 F -0.129 7.129 23 C -0.129 4.129 24 C -0.195 4.195 25 N -0.077 5.077 26 N -0.204 5.204 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.164 0.836 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.200 0.800 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.106 -29.765 1.142 30.406 hybrid contribution -0.150 1.102 0.427 1.191 sum 5.956 -28.663 1.569 29.317 Atomic orbital electron populations 1.70053 1.07570 1.28185 1.50683 1.25877 0.95787 1.03048 0.94287 0.85486 0.78289 0.78039 0.79175 1.19267 1.20566 1.19339 1.21426 0.93641 0.91270 1.51961 0.91936 1.18757 0.93483 0.90637 0.96768 1.23601 1.00973 0.91510 1.05517 1.85249 1.01421 0.97414 1.92048 1.27789 1.00999 0.87885 1.07770 1.74768 0.99332 1.20641 1.21371 1.74005 1.26493 0.94756 1.18046 1.24655 0.78422 0.98295 1.05197 1.20924 1.04261 0.83572 0.82918 1.86080 1.82996 1.25923 1.28657 1.19140 0.96189 0.82906 0.94890 1.20460 1.03327 0.95473 0.95636 1.21143 0.99466 0.92927 0.99532 1.17864 1.05094 0.79818 0.95083 1.91477 1.88916 1.36178 1.96318 1.21204 0.99243 0.96121 0.96349 1.21384 1.04661 0.94104 0.99385 1.45190 1.05907 1.01730 1.54884 1.59950 1.00799 1.36630 1.23014 0.92439 0.97025 0.97161 0.90067 0.89887 0.86377 0.86039 0.83583 0.82438 0.82401 0.81947 0.79960 0.79269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.01 13.29 21.45 0.28 -53.72 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -30.02 9.11 25.60 0.23 -29.78 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.04 2.15 4.98 29.85 0.15 2.30 16 10 C -0.07 -2.78 5.17 71.98 0.37 -2.40 16 11 S 0.01 0.30 21.98 -56.49 -1.24 -0.94 16 12 C 0.13 4.20 8.13 179.55 1.46 5.66 16 13 N -0.32 -11.79 11.60 -56.85 -0.66 -12.45 16 14 N -0.29 -9.75 12.17 -49.52 -0.60 -10.35 16 15 C 0.20 5.17 7.81 137.63 1.07 6.24 16 16 C 0.16 2.51 5.28 71.24 0.38 2.88 16 17 O -0.32 -5.91 10.12 -92.89 -0.94 -6.85 16 18 C 0.11 1.71 6.69 22.49 0.15 1.86 16 19 C -0.13 -1.84 9.99 22.36 0.22 -1.61 16 20 C -0.11 -1.43 10.02 22.30 0.22 -1.21 16 21 C 0.04 0.58 7.30 22.37 0.16 0.74 16 22 F -0.15 -2.46 17.27 44.97 0.78 -1.68 16 23 C -0.11 -1.25 10.02 22.30 0.22 -1.03 16 24 C -0.18 -1.96 9.04 22.36 0.20 -1.75 16 25 N -0.30 -7.15 3.81 -185.32 -0.71 -7.85 16 26 N -0.57 -8.50 10.39 37.02 0.38 -8.12 16 27 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.08 3.49 8.14 -2.40 -0.02 3.47 16 32 H 0.12 1.44 7.66 -2.39 -0.02 1.42 16 33 H 0.12 1.21 7.66 -2.39 -0.02 1.19 16 34 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.16 0.97 6.30 -2.91 -0.02 0.95 16 38 H 0.38 4.31 9.21 -210.55 -1.94 2.38 16 39 H 0.39 4.97 8.81 -210.55 -1.85 3.12 16 Total: -1.00 -70.61 362.90 1.97 -68.65 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -2.67 Total: 5.15 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 5.31 Total: -17.13 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -1.30 Total: -92.49 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.94 Total: -6.85 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.78 Total: -1.68 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.24 Total: -0.94 kcal Total: -70.61 1.97 -68.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071844640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.308 kcal (2) G-P(sol) polarization free energy of solvation -70.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds