Wall clock time and date at job start Tue Mar 31 2020 20:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47071 * 269.99860 * 3 2 1 5 5 H 1.48500 * 109.47403 * 30.00097 * 3 2 1 6 6 H 1.48501 * 109.46996 * 150.00065 * 3 2 1 7 7 C 1.37871 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00444 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99802 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47359 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47427 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54248 * 68.37150 * 11 10 9 13 13 O 1.42098 * 110.54096 * 291.62176 * 11 10 9 14 14 C 1.76203 * 104.44942 * 179.97438 * 11 10 9 15 15 C 1.38368 * 119.84562 * 90.00131 * 14 11 10 16 16 C 1.37945 * 120.14604 * 179.97438 * 15 14 11 17 17 C 1.39630 * 119.84903 * 0.02562 * 16 15 14 18 18 C 1.47727 * 120.14599 * 179.97438 * 17 16 15 19 19 O 1.21462 * 120.00463 * 359.97438 * 18 17 16 20 20 O 1.34715 * 119.99550 * 179.97438 * 18 17 16 21 21 C 1.45196 * 116.99791 * 179.97438 * 20 18 17 22 22 C 1.53008 * 109.47124 * 179.97438 * 21 20 18 23 23 C 1.52992 * 117.49845 * 243.62157 * 22 21 20 24 24 C 1.52993 * 60.00131 * 252.51100 * 23 22 21 25 25 C 1.39627 * 119.70205 * 0.24739 * 17 16 15 26 26 C 1.37947 * 119.84109 * 359.45449 * 25 17 16 27 27 H 0.97005 * 120.00480 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47405 * 59.99501 * 9 7 2 29 29 H 1.09005 * 109.47084 * 299.99968 * 9 7 2 30 30 H 1.09003 * 109.47391 * 59.99344 * 10 9 7 31 31 H 1.09005 * 109.46876 * 299.99947 * 10 9 7 32 32 H 1.07997 * 119.92883 * 359.97438 * 15 14 11 33 33 H 1.07997 * 120.07485 * 179.97438 * 16 15 14 34 34 H 1.08996 * 109.47465 * 300.00039 * 21 20 18 35 35 H 1.08999 * 109.47008 * 60.00049 * 21 20 18 36 36 H 1.08997 * 115.54371 * 29.33451 * 22 21 20 37 37 H 1.09001 * 117.50395 * 0.02562 * 23 22 21 38 38 H 1.09003 * 117.49866 * 145.01972 * 23 22 21 39 39 H 1.09004 * 117.50326 * 252.51108 * 24 23 22 40 40 H 1.09003 * 117.49764 * 107.49590 * 24 23 22 41 41 H 1.07991 * 120.07461 * 179.75198 * 25 17 16 42 42 H 1.08003 * 119.92013 * 180.27609 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 16 5.8356 -2.6363 0.0009 12 8 6.3343 -2.1460 1.2379 13 8 6.3342 -2.1459 -1.2361 14 6 6.2753 -4.3426 0.0016 15 6 6.4472 -5.0099 -1.1984 16 6 6.7919 -6.3456 -1.2051 17 6 6.9669 -7.0242 0.0025 18 6 7.3355 -8.4548 0.0030 19 8 7.4866 -9.0434 -1.0487 20 8 7.5041 -9.1065 1.1699 21 6 7.8654 -10.5107 1.0944 22 6 8.0126 -11.0762 2.5085 23 6 9.3967 -11.5741 2.9296 24 6 8.2768 -12.5770 2.6452 25 6 6.7863 -6.3462 1.2097 26 6 6.4477 -5.0089 1.2018 27 1 -0.4851 0.8400 0.0004 28 1 3.8746 -0.6798 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 3.6586 -3.1501 -0.8892 31 1 3.6579 -3.1504 0.8908 32 1 6.3111 -4.4839 -2.1317 33 1 6.9253 -6.8653 -2.1423 34 1 7.0869 -11.0581 0.5631 35 1 8.8106 -10.6146 0.5617 36 1 7.3942 -10.6025 3.2709 37 1 10.2025 -11.4984 2.1995 38 1 9.6892 -11.4278 3.9694 39 1 7.8326 -13.0907 3.4978 40 1 8.3458 -13.1616 1.7277 41 1 6.9162 -6.8662 2.1472 42 1 6.3120 -4.4821 2.1348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103332399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:51 Heat of formation + Delta-G solvation = -106.966794 kcal Electronic energy + Delta-G solvation = -25523.258880 eV Core-core repulsion = 21561.763602 eV Total energy + Delta-G solvation = -3961.495278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01586 -39.19793 -37.98683 -36.83685 -36.49552 -35.67515 -34.02206 -32.12859 -31.54349 -31.41808 -28.45734 -26.09625 -24.93670 -23.13467 -22.95011 -21.62380 -21.30836 -21.11607 -18.94253 -18.48320 -17.90672 -17.44801 -16.93019 -16.79963 -16.05897 -15.76148 -15.48796 -15.04400 -14.93896 -14.73540 -14.36547 -14.04152 -13.89311 -13.78576 -13.70868 -13.09148 -13.02630 -12.81846 -12.11407 -11.98564 -11.96204 -11.80887 -11.77885 -11.53019 -11.49084 -11.30633 -11.27089 -11.27070 -10.99070 -10.74888 -10.48775 -10.48081 -10.18251 -9.86360 -9.60685 -9.39080 -9.36741 -8.69683 -6.19816 -4.21953 -0.08116 0.37566 0.97502 1.99526 2.05834 3.07337 3.18860 3.24547 3.25558 3.32382 3.35642 3.95659 4.09510 4.21438 4.22955 4.29033 4.32769 4.46616 4.56239 4.60275 4.64704 4.85813 4.97322 4.98308 5.03859 5.08822 5.12454 5.24571 5.32765 5.41873 5.47682 5.52593 5.54231 5.61802 5.68312 5.77862 5.86714 5.96220 6.18265 6.39572 6.74722 6.87324 7.27828 7.49445 8.31906 8.80981 9.39135 10.92314 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.002085 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.169313 B =13425.093580 C =13720.701950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.521 4.521 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.555 4.555 11 S 2.468 3.532 12 O -0.941 6.941 13 O -0.941 6.941 14 C -0.622 4.622 15 C -0.035 4.035 16 C -0.076 4.076 17 C -0.084 4.084 18 C 0.510 3.490 19 O -0.500 6.500 20 O -0.347 6.347 21 C 0.099 3.901 22 C -0.161 4.161 23 C -0.176 4.176 24 C -0.168 4.168 25 C -0.084 4.084 26 C -0.037 4.037 27 H 0.267 0.733 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.147 0.853 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.723 -21.808 4.076 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.560 4.560 8 H 0.097 0.903 9 C -0.048 4.048 10 C -0.688 4.688 11 S 2.650 3.350 12 O -0.938 6.938 13 O -0.938 6.938 14 C -0.706 4.706 15 C -0.054 4.054 16 C -0.095 4.095 17 C -0.085 4.085 18 C 0.355 3.645 19 O -0.388 6.388 20 O -0.264 6.264 21 C 0.026 3.974 22 C -0.179 4.179 23 C -0.213 4.213 24 C -0.205 4.205 25 C -0.103 4.103 26 C -0.056 4.056 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.165 0.835 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 17.263 -21.281 3.779 27.661 hybrid contribution -0.047 -0.168 -0.084 0.194 sum 17.216 -21.449 3.695 27.751 Atomic orbital electron populations 1.69878 1.06219 1.27330 1.49735 1.24980 0.94824 0.99180 0.94079 0.86928 0.80708 0.83668 0.79168 1.19639 1.20755 1.18535 1.20813 0.87599 0.95006 1.52594 0.90287 1.19488 0.99944 0.87151 0.98246 1.30028 1.17526 1.09651 1.11616 1.06575 0.80022 0.73563 0.74882 1.93542 1.78853 1.77127 1.44271 1.93543 1.78856 1.77128 1.44276 1.31342 1.12803 1.27306 0.99115 1.21008 0.93191 0.93623 0.97531 1.21389 0.96388 0.94270 0.97492 1.19372 1.03710 0.89940 0.95461 1.21169 0.73866 0.87730 0.81766 1.90849 1.46836 1.68503 1.32632 1.86521 1.80106 1.26027 1.33726 1.22608 1.01220 0.77382 0.96220 1.22141 1.01321 0.97291 0.97160 1.23133 0.91761 1.03329 1.03042 1.23014 1.02730 0.90909 1.03856 1.21586 0.96478 0.94474 0.97723 1.21045 0.93169 0.93914 0.97440 0.92314 0.94604 0.95057 0.85032 0.85004 0.82814 0.83571 0.90399 0.90785 0.86203 0.88456 0.88175 0.87928 0.88382 0.83514 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 20.83 27.47 -169.99 -4.67 16.16 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -13.98 9.66 -34.44 -0.33 -14.31 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.21 4.05 -27.89 -0.11 -0.32 16 10 C -0.55 -9.25 5.92 37.15 0.22 -9.03 16 11 S 2.47 38.47 5.15 -107.50 -0.55 37.92 16 12 O -0.94 -16.78 17.11 -57.54 -0.98 -17.77 16 13 O -0.94 -16.84 17.11 -57.54 -0.98 -17.82 16 14 C -0.62 -7.98 5.66 -39.49 -0.22 -8.20 16 15 C -0.04 -0.41 9.45 -39.64 -0.37 -0.79 16 16 C -0.08 -0.85 9.60 -39.17 -0.38 -1.23 16 17 C -0.08 -0.94 5.87 -104.98 -0.62 -1.55 16 18 C 0.51 5.79 7.90 34.61 0.27 6.06 16 19 O -0.50 -6.62 16.14 -19.24 -0.31 -6.93 16 20 O -0.35 -3.38 9.47 -40.53 -0.38 -3.76 16 21 C 0.10 0.77 5.76 37.16 0.21 0.98 16 22 C -0.16 -0.98 6.07 -90.62 -0.55 -1.53 16 23 C -0.18 -0.89 10.18 -26.74 -0.27 -1.16 16 24 C -0.17 -0.78 10.25 -26.74 -0.27 -1.05 16 25 C -0.08 -0.86 9.62 -39.17 -0.38 -1.24 16 26 C -0.04 -0.42 9.45 -39.64 -0.37 -0.80 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 29 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 30 H 0.13 1.95 8.14 -51.92 -0.42 1.52 16 31 H 0.13 1.94 8.14 -51.92 -0.42 1.52 16 32 H 0.15 1.60 7.56 -52.49 -0.40 1.20 16 33 H 0.15 1.43 7.65 -52.49 -0.40 1.03 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 36 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.47 8.03 -51.93 -0.42 0.05 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.15 1.16 7.61 -52.49 -0.40 0.76 16 42 H 0.15 1.52 7.56 -52.48 -0.40 1.12 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -34.49 376.40 -10.45 -44.94 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.73 Total: -0.52 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -3.27 Total: -32.24 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.77 Total: -25.64 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -2.66 Total: -46.29 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 16 Polarization: 38.47 SS G_CDS: -0.55 Total: 37.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.49 -10.45 -44.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103332399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.030 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds