Wall clock time and date at job start Tue Mar 31 2020 20:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47071 * 269.99860 * 3 2 1 5 5 H 1.48500 * 109.47403 * 30.00097 * 3 2 1 6 6 H 1.48501 * 109.46996 * 150.00065 * 3 2 1 7 7 C 1.37871 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00444 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99802 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47359 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47427 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54248 * 68.37150 * 11 10 9 13 13 O 1.42098 * 110.54096 * 291.62176 * 11 10 9 14 14 C 1.76203 * 104.44942 * 179.97438 * 11 10 9 15 15 C 1.38368 * 119.84562 * 90.00131 * 14 11 10 16 16 C 1.37945 * 120.14604 * 179.97438 * 15 14 11 17 17 C 1.39630 * 119.84903 * 0.02562 * 16 15 14 18 18 C 1.47727 * 120.14599 * 179.97438 * 17 16 15 19 19 O 1.21462 * 120.00463 * 359.97438 * 18 17 16 20 20 O 1.34715 * 119.99550 * 179.97438 * 18 17 16 21 21 C 1.45196 * 116.99791 * 179.97438 * 20 18 17 22 22 C 1.53008 * 109.47124 * 179.97438 * 21 20 18 23 23 C 1.52992 * 117.49845 * 243.62157 * 22 21 20 24 24 C 1.52993 * 60.00131 * 252.51100 * 23 22 21 25 25 C 1.39627 * 119.70205 * 0.24739 * 17 16 15 26 26 C 1.37947 * 119.84109 * 359.45449 * 25 17 16 27 27 H 0.97005 * 120.00480 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47405 * 59.99501 * 9 7 2 29 29 H 1.09005 * 109.47084 * 299.99968 * 9 7 2 30 30 H 1.09003 * 109.47391 * 59.99344 * 10 9 7 31 31 H 1.09005 * 109.46876 * 299.99947 * 10 9 7 32 32 H 1.07997 * 119.92883 * 359.97438 * 15 14 11 33 33 H 1.07997 * 120.07485 * 179.97438 * 16 15 14 34 34 H 1.08996 * 109.47465 * 300.00039 * 21 20 18 35 35 H 1.08999 * 109.47008 * 60.00049 * 21 20 18 36 36 H 1.08997 * 115.54371 * 29.33451 * 22 21 20 37 37 H 1.09001 * 117.50395 * 0.02562 * 23 22 21 38 38 H 1.09003 * 117.49866 * 145.01972 * 23 22 21 39 39 H 1.09004 * 117.50326 * 252.51108 * 24 23 22 40 40 H 1.09003 * 117.49764 * 107.49590 * 24 23 22 41 41 H 1.07991 * 120.07461 * 179.75198 * 25 17 16 42 42 H 1.08003 * 119.92013 * 180.27609 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 16 5.8356 -2.6363 0.0009 12 8 6.3343 -2.1460 1.2379 13 8 6.3342 -2.1459 -1.2361 14 6 6.2753 -4.3426 0.0016 15 6 6.4472 -5.0099 -1.1984 16 6 6.7919 -6.3456 -1.2051 17 6 6.9669 -7.0242 0.0025 18 6 7.3355 -8.4548 0.0030 19 8 7.4866 -9.0434 -1.0487 20 8 7.5041 -9.1065 1.1699 21 6 7.8654 -10.5107 1.0944 22 6 8.0126 -11.0762 2.5085 23 6 9.3967 -11.5741 2.9296 24 6 8.2768 -12.5770 2.6452 25 6 6.7863 -6.3462 1.2097 26 6 6.4477 -5.0089 1.2018 27 1 -0.4851 0.8400 0.0004 28 1 3.8746 -0.6798 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 3.6586 -3.1501 -0.8892 31 1 3.6579 -3.1504 0.8908 32 1 6.3111 -4.4839 -2.1317 33 1 6.9253 -6.8653 -2.1423 34 1 7.0869 -11.0581 0.5631 35 1 8.8106 -10.6146 0.5617 36 1 7.3942 -10.6025 3.2709 37 1 10.2025 -11.4984 2.1995 38 1 9.6892 -11.4278 3.9694 39 1 7.8326 -13.0907 3.4978 40 1 8.3458 -13.1616 1.7277 41 1 6.9162 -6.8662 2.1472 42 1 6.3120 -4.4821 2.1348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103332399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:50 Heat of formation + Delta-G solvation = -127.968675 kcal Electronic energy + Delta-G solvation = -25524.169590 eV Core-core repulsion = 21561.763602 eV Total energy + Delta-G solvation = -3962.405987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.85598 -40.04094 -38.56193 -38.17108 -37.22070 -37.01639 -35.86449 -33.45143 -33.03249 -32.28890 -29.08932 -27.88128 -25.86712 -23.99602 -23.31491 -23.12008 -22.26179 -21.78665 -20.11934 -19.49240 -19.20020 -18.64520 -18.09780 -17.64238 -17.12932 -16.91320 -16.48669 -16.34838 -15.95959 -15.81843 -15.30660 -15.20323 -14.80251 -14.75742 -14.69081 -14.57657 -13.99782 -13.87042 -13.75613 -13.18598 -13.09712 -13.03336 -12.92701 -12.55007 -12.47187 -12.38873 -12.24698 -12.16914 -12.15370 -11.94679 -11.80975 -11.63505 -11.38060 -11.19072 -10.95970 -10.80666 -10.62863 -10.24706 -8.32774 -6.38535 -1.09318 -0.79877 0.11787 1.09857 1.30838 1.36222 1.38361 1.47830 1.90635 2.32712 2.33219 2.77780 2.86196 3.01696 3.11103 3.28404 3.59729 3.71911 3.75306 3.85947 3.93979 3.99007 4.07151 4.10690 4.13498 4.26623 4.31474 4.42304 4.45591 4.61925 4.75518 4.77853 4.80764 4.87150 4.98439 5.00523 5.07556 5.12849 5.14947 5.20642 5.25867 5.50899 5.53000 6.19988 6.44014 6.68372 7.25833 8.82563 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.002085 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.169313 B =13425.093580 C =13720.701950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.012 3.988 3 Si 0.925 3.075 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.245 1.245 7 C -0.525 4.525 8 H 0.051 0.949 9 C -0.021 4.021 10 C -0.562 4.562 11 S 2.497 3.503 12 O -0.963 6.963 13 O -0.965 6.965 14 C -0.625 4.625 15 C -0.041 4.041 16 C -0.078 4.078 17 C -0.088 4.088 18 C 0.514 3.486 19 O -0.523 6.523 20 O -0.345 6.345 21 C 0.095 3.905 22 C -0.172 4.172 23 C -0.176 4.176 24 C -0.160 4.160 25 C -0.075 4.075 26 C -0.042 4.042 27 H 0.269 0.731 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.173 0.827 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.617 -22.917 4.808 29.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.747 3.253 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.168 1.168 7 C -0.564 4.564 8 H 0.069 0.931 9 C -0.060 4.060 10 C -0.694 4.694 11 S 2.682 3.318 12 O -0.961 6.961 13 O -0.963 6.963 14 C -0.712 4.712 15 C -0.059 4.059 16 C -0.097 4.097 17 C -0.090 4.090 18 C 0.359 3.641 19 O -0.413 6.413 20 O -0.261 6.261 21 C 0.022 3.978 22 C -0.190 4.190 23 C -0.213 4.213 24 C -0.197 4.197 25 C -0.093 4.093 26 C -0.060 4.060 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.182 0.818 33 H 0.175 0.825 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.190 0.810 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 19.146 -22.355 4.524 29.779 hybrid contribution -0.607 -0.039 -0.288 0.673 sum 18.539 -22.394 4.236 29.379 Atomic orbital electron populations 1.70014 1.07957 1.28328 1.51800 1.25878 0.95608 1.03067 0.94089 0.86029 0.80064 0.79356 0.79819 1.18674 1.20291 1.16824 1.21169 0.90251 0.93870 1.51154 0.93099 1.19454 0.97056 0.91028 0.98454 1.30005 1.19487 1.06490 1.13441 1.05325 0.78538 0.74272 0.73683 1.93508 1.78768 1.78610 1.45181 1.93508 1.78802 1.78659 1.45291 1.30810 1.14821 1.25227 1.00359 1.21182 0.93106 0.93984 0.97662 1.21534 0.96001 0.94007 0.98182 1.19541 1.03449 0.90040 0.95932 1.21192 0.73308 0.87764 0.81815 1.90840 1.48017 1.69004 1.33473 1.86516 1.79675 1.27079 1.32848 1.22801 1.01209 0.76294 0.97519 1.22128 1.02348 0.98423 0.96115 1.23218 0.91432 1.03144 1.03524 1.23119 1.01982 0.90128 1.04478 1.21824 0.95114 0.93935 0.98461 1.21306 0.92788 0.94461 0.97476 0.92217 0.94348 0.94606 0.83478 0.83296 0.81774 0.82477 0.90416 0.90733 0.86155 0.88369 0.87418 0.86846 0.87907 0.80990 0.81477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.89 13.96 21.45 0.30 -56.59 16 2 C 0.01 0.68 5.47 84.65 0.46 1.14 16 3 Si 0.92 42.57 27.47 68.60 1.88 44.45 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 7 C -0.53 -28.53 9.66 25.60 0.25 -28.29 16 8 H 0.05 2.96 7.99 -2.91 -0.02 2.93 16 9 C -0.02 -0.93 4.05 29.85 0.12 -0.81 16 10 C -0.56 -18.15 5.92 71.98 0.43 -17.73 16 11 S 2.50 74.23 5.15 -56.49 -0.29 73.94 16 12 O -0.96 -32.89 17.11 -127.65 -2.18 -35.07 16 13 O -0.97 -33.36 17.11 -127.65 -2.18 -35.54 16 14 C -0.62 -14.82 5.66 22.33 0.13 -14.69 16 15 C -0.04 -0.89 9.45 22.23 0.21 -0.68 16 16 C -0.08 -1.60 9.60 22.54 0.22 -1.39 16 17 C -0.09 -1.79 5.87 -20.10 -0.12 -1.91 16 18 C 0.51 10.83 7.90 70.33 0.56 11.39 16 19 O -0.52 -13.27 16.14 19.96 0.32 -12.95 16 20 O -0.34 -6.11 9.47 -56.24 -0.53 -6.64 16 21 C 0.09 1.34 5.76 71.98 0.41 1.75 16 22 C -0.17 -1.79 6.07 -10.80 -0.07 -1.86 16 23 C -0.18 -1.46 10.18 30.59 0.31 -1.15 16 24 C -0.16 -1.17 10.25 30.59 0.31 -0.85 16 25 C -0.07 -1.33 9.62 22.54 0.22 -1.11 16 26 C -0.04 -0.85 9.45 22.23 0.21 -0.64 16 27 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 28 H 0.04 1.65 7.20 -2.39 -0.02 1.64 16 29 H 0.04 1.53 7.57 -2.38 -0.02 1.51 16 30 H 0.15 4.21 8.14 -2.39 -0.02 4.19 16 31 H 0.15 4.21 8.14 -2.39 -0.02 4.19 16 32 H 0.16 3.15 7.56 -2.91 -0.02 3.13 16 33 H 0.16 2.82 7.65 -2.91 -0.02 2.80 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.04 7.87 -2.39 -0.02 1.02 16 36 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 0.79 8.03 -2.39 -0.02 0.77 16 38 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.17 2.14 7.61 -2.92 -0.02 2.12 16 42 H 0.17 2.88 7.56 -2.91 -0.02 2.86 16 Total: -1.00 -73.93 376.40 1.93 -71.99 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.97 Total: 13.23 kcal Atomic # 6 Polarization: -60.47 SS G_CDS: 3.65 Total: -56.82 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.30 Total: -56.59 kcal Atomic # 8 Polarization: -85.62 SS G_CDS: -4.58 Total: -90.20 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.45 kcal Atomic # 16 Polarization: 74.23 SS G_CDS: -0.29 Total: 73.94 kcal Total: -73.93 1.93 -71.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103332399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.975 kcal (2) G-P(sol) polarization free energy of solvation -73.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds