Wall clock time and date at job start Tue Mar 31 2020 21:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00149 * 2 1 4 4 C 1.53006 * 109.47191 * 124.99912 * 3 2 1 5 5 O 1.45203 * 109.47224 * 179.97438 * 4 3 2 6 6 C 1.34704 * 116.99990 * 180.02562 * 5 4 3 7 7 O 1.21468 * 120.00334 * 359.97438 * 6 5 4 8 8 C 1.47732 * 119.99937 * 180.02562 * 6 5 4 9 9 C 1.39627 * 120.14880 * 180.02562 * 8 6 5 10 10 C 1.37943 * 119.84830 * 180.02562 * 9 8 6 11 11 C 1.38369 * 120.14997 * 0.02648 * 10 9 8 12 12 S 1.76193 * 119.84954 * 179.97438 * 11 10 9 13 13 O 1.42105 * 104.27847 * 206.06934 * 12 11 10 14 14 O 1.42101 * 104.27778 * 333.92604 * 12 11 10 15 15 C 1.81397 * 104.44909 * 89.99767 * 12 11 10 16 16 C 1.53009 * 109.47235 * 179.97438 * 15 12 11 17 17 C 1.50697 * 109.46948 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00322 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99943 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99809 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46833 * 90.00160 * 21 19 17 23 23 H 1.48496 * 109.47064 * 210.00215 * 21 19 17 24 24 H 1.48500 * 109.47150 * 330.00047 * 21 19 17 25 25 C 1.38371 * 120.30025 * 0.22749 * 11 10 9 26 26 C 1.37943 * 120.15066 * 359.48853 * 25 11 10 27 27 H 1.08002 * 119.99822 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00059 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00015 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47550 * 5.00142 * 3 2 1 31 31 H 1.09001 * 109.47582 * 244.99778 * 3 2 1 32 32 H 1.08999 * 109.46841 * 60.00227 * 4 3 2 33 33 H 1.08994 * 109.47058 * 300.00136 * 4 3 2 34 34 H 1.08002 * 120.07893 * 359.97438 * 9 8 6 35 35 H 1.07999 * 119.92899 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47032 * 299.99903 * 15 12 11 37 37 H 1.09000 * 109.47124 * 60.00175 * 15 12 11 38 38 H 1.08995 * 109.47216 * 300.00010 * 16 15 12 39 39 H 1.09000 * 109.46805 * 60.00123 * 16 15 12 40 40 H 0.97001 * 119.99986 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.92476 * 179.72803 * 25 11 10 42 42 H 1.08001 * 120.07890 * 180.25515 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7615 2.5903 1.1813 6 6 4.6639 2.7754 2.1642 7 8 4.8388 1.9105 2.9989 8 6 5.4400 4.0308 2.2274 9 6 6.3766 4.2258 3.2445 10 6 7.0975 5.4006 3.2980 11 6 6.8938 6.3849 2.3470 12 16 7.8185 7.8827 2.4233 13 8 6.9908 8.8390 1.7753 14 8 8.1557 8.0169 3.7972 15 6 9.3017 7.5499 1.4335 16 6 10.1964 8.7911 1.4219 17 6 11.4288 8.5143 0.6001 18 1 11.5607 7.5498 0.1324 19 6 12.3877 9.4928 0.4444 20 7 12.2269 10.6675 1.0135 21 14 13.9151 9.1501 -0.5749 22 1 13.6603 9.5234 -1.9894 23 1 15.0508 9.9492 -0.0489 24 1 14.2484 7.7051 -0.4966 25 6 5.9635 6.2004 1.3395 26 6 5.2400 5.0280 1.2708 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 3.7399 0.5065 1.0921 33 1 2.4773 1.2356 2.1130 34 1 6.5356 3.4589 3.9882 35 1 7.8219 5.5530 4.0844 36 1 9.8477 6.7121 1.8674 37 1 9.0096 7.3036 0.4126 38 1 9.6503 9.6286 0.9878 39 1 10.4886 9.0378 2.4426 40 1 12.9016 11.3558 0.9042 41 1 5.8064 6.9745 0.6029 42 1 4.5171 4.8835 0.4815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103646903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:48 Heat of formation + Delta-G solvation = -120.845837 kcal Electronic energy + Delta-G solvation = -25325.875349 eV Core-core repulsion = 21363.778231 eV Total energy + Delta-G solvation = -3962.097118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97684 -39.10636 -37.17518 -36.69912 -35.54773 -35.53244 -33.95767 -32.11199 -31.37889 -31.22786 -30.14095 -25.81044 -25.38011 -23.63188 -22.98536 -21.77354 -21.31549 -20.33350 -18.84691 -18.41225 -17.72973 -17.18688 -17.04923 -16.46426 -15.84791 -15.69758 -15.37627 -15.07061 -14.83764 -14.61000 -14.53395 -14.30005 -13.83579 -13.56921 -13.48386 -13.18386 -13.01144 -12.56252 -12.47727 -12.13785 -11.82424 -11.71249 -11.67853 -11.65792 -11.44886 -11.11618 -11.08211 -11.01781 -10.99267 -10.71138 -10.44878 -10.42002 -9.95386 -9.86170 -9.64434 -9.35076 -9.19246 -8.53804 -6.16207 -4.22184 -0.02744 0.49624 1.01544 1.61588 2.02982 2.21217 3.19151 3.24375 3.30991 3.31865 3.33851 4.10074 4.21612 4.29058 4.34672 4.35410 4.45820 4.53322 4.60345 4.64659 4.74383 4.89759 5.02356 5.10158 5.19396 5.21874 5.28532 5.34468 5.40680 5.57440 5.61699 5.66397 5.70247 5.82352 5.91707 5.96819 6.05901 6.16514 6.38114 6.44000 7.24638 7.29857 7.29973 7.76606 8.11640 8.81171 9.42929 10.94609 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.002019 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.804615 B =13867.152785 C =14456.507376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C -0.094 4.094 4 C 0.071 3.929 5 O -0.351 6.351 6 C 0.510 3.490 7 O -0.499 6.499 8 C -0.086 4.086 9 C -0.077 4.077 10 C -0.036 4.036 11 C -0.622 4.622 12 S 2.470 3.530 13 O -0.941 6.941 14 O -0.941 6.941 15 C -0.561 4.561 16 C 0.026 3.974 17 C -0.522 4.522 18 H 0.063 0.937 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.038 4.038 26 C -0.085 4.085 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.266 0.734 41 H 0.153 0.847 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.719 -18.785 -1.227 27.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.176 4.176 3 C -0.131 4.131 4 C -0.002 4.002 5 O -0.268 6.268 6 C 0.355 3.645 7 O -0.388 6.388 8 C -0.087 4.087 9 C -0.096 4.096 10 C -0.054 4.054 11 C -0.705 4.705 12 S 2.652 3.348 13 O -0.938 6.938 14 O -0.938 6.938 15 C -0.695 4.695 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.081 0.919 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.056 4.056 26 C -0.103 4.103 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.170 0.830 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.945 -18.200 -0.491 27.006 hybrid contribution 0.802 -1.201 -0.845 1.674 sum -19.143 -19.402 -1.336 27.289 Atomic orbital electron populations 1.23951 0.95818 1.02320 0.99681 1.22725 0.96040 0.97734 1.01117 1.20707 0.97765 0.96605 0.98037 1.23064 0.93954 0.83283 0.99920 1.86515 1.49921 1.40845 1.49518 1.21173 0.77744 0.86946 0.78648 1.90850 1.64934 1.43998 1.39018 1.19366 0.98300 0.92465 0.98560 1.21386 0.93568 0.97842 0.96785 1.21013 0.97204 0.90949 0.96249 1.31472 1.13267 1.22586 1.03207 1.06593 0.77532 0.74114 0.76599 1.93536 1.66269 1.56866 1.77155 1.93537 1.84570 1.84582 1.31131 1.30194 1.14866 1.11518 1.12932 1.19050 0.94135 0.88514 0.99620 1.20982 1.03435 0.99705 1.32034 0.91908 1.25058 0.98578 0.94985 0.95767 1.69951 1.35341 1.04098 1.43277 0.86458 0.82159 0.78381 0.80220 1.20455 1.20995 1.19753 1.21052 0.91968 0.96908 0.95721 1.21579 0.98685 0.92382 0.97697 0.88256 0.88039 0.86891 0.90113 0.89523 0.90760 0.90805 0.83636 0.82842 0.85619 0.85621 0.94495 0.94495 0.92469 0.82953 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 14.32 29.02 0.42 -0.42 16 2 C -0.16 -0.80 9.52 -36.02 -0.34 -1.14 16 3 C -0.09 -0.53 6.04 -27.88 -0.17 -0.70 16 4 C 0.07 0.54 5.46 37.16 0.20 0.74 16 5 O -0.35 -3.38 9.47 -40.50 -0.38 -3.77 16 6 C 0.51 5.86 7.90 34.61 0.27 6.13 16 7 O -0.50 -6.72 16.14 -19.24 -0.31 -7.03 16 8 C -0.09 -0.98 5.87 -104.98 -0.62 -1.60 16 9 C -0.08 -0.88 9.60 -39.17 -0.38 -1.26 16 10 C -0.04 -0.44 9.45 -39.64 -0.37 -0.81 16 11 C -0.62 -8.34 5.66 -39.48 -0.22 -8.57 16 12 S 2.47 40.89 5.15 -107.50 -0.55 40.34 16 13 O -0.94 -17.85 17.10 -57.54 -0.98 -18.83 16 14 O -0.94 -17.98 17.11 -57.54 -0.98 -18.97 16 15 C -0.56 -9.83 5.92 37.16 0.22 -9.61 16 16 C 0.03 0.62 4.98 -27.88 -0.14 0.48 16 17 C -0.52 -13.86 9.11 -34.44 -0.31 -14.17 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 21 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.04 -0.45 9.45 -39.64 -0.37 -0.82 16 26 C -0.08 -0.89 9.62 -39.17 -0.38 -1.27 16 27 H 0.10 0.42 7.84 -52.49 -0.41 0.01 16 28 H 0.10 0.37 8.06 -52.49 -0.42 -0.05 16 29 H 0.11 0.48 8.06 -52.48 -0.42 0.06 16 30 H 0.08 0.44 7.79 -51.93 -0.40 0.03 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.15 1.47 7.65 -52.49 -0.40 1.07 16 35 H 0.15 1.69 7.56 -52.49 -0.40 1.29 16 36 H 0.13 1.93 8.14 -51.92 -0.42 1.51 16 37 H 0.13 1.92 8.14 -51.92 -0.42 1.50 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.15 1.59 7.55 -52.49 -0.40 1.20 16 42 H 0.15 1.17 7.61 -52.49 -0.40 0.77 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -34.46 382.63 -9.78 -44.24 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.76 Total: -0.96 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -2.29 Total: -31.50 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.74 Total: -24.94 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -2.66 Total: -48.60 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 40.89 SS G_CDS: -0.55 Total: 40.34 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.46 -9.78 -44.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103646903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.607 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds