Wall clock time and date at job start Tue Mar 31 2020 21:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00149 * 2 1 4 4 C 1.53006 * 109.47191 * 124.99912 * 3 2 1 5 5 O 1.45203 * 109.47224 * 179.97438 * 4 3 2 6 6 C 1.34704 * 116.99990 * 180.02562 * 5 4 3 7 7 O 1.21468 * 120.00334 * 359.97438 * 6 5 4 8 8 C 1.47732 * 119.99937 * 180.02562 * 6 5 4 9 9 C 1.39627 * 120.14880 * 180.02562 * 8 6 5 10 10 C 1.37943 * 119.84830 * 180.02562 * 9 8 6 11 11 C 1.38369 * 120.14997 * 0.02648 * 10 9 8 12 12 S 1.76193 * 119.84954 * 179.97438 * 11 10 9 13 13 O 1.42105 * 104.27847 * 206.06934 * 12 11 10 14 14 O 1.42101 * 104.27778 * 333.92604 * 12 11 10 15 15 C 1.81397 * 104.44909 * 89.99767 * 12 11 10 16 16 C 1.53009 * 109.47235 * 179.97438 * 15 12 11 17 17 C 1.50697 * 109.46948 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00322 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99943 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99809 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46833 * 90.00160 * 21 19 17 23 23 H 1.48496 * 109.47064 * 210.00215 * 21 19 17 24 24 H 1.48500 * 109.47150 * 330.00047 * 21 19 17 25 25 C 1.38371 * 120.30025 * 0.22749 * 11 10 9 26 26 C 1.37943 * 120.15066 * 359.48853 * 25 11 10 27 27 H 1.08002 * 119.99822 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00059 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00015 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47550 * 5.00142 * 3 2 1 31 31 H 1.09001 * 109.47582 * 244.99778 * 3 2 1 32 32 H 1.08999 * 109.46841 * 60.00227 * 4 3 2 33 33 H 1.08994 * 109.47058 * 300.00136 * 4 3 2 34 34 H 1.08002 * 120.07893 * 359.97438 * 9 8 6 35 35 H 1.07999 * 119.92899 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47032 * 299.99903 * 15 12 11 37 37 H 1.09000 * 109.47124 * 60.00175 * 15 12 11 38 38 H 1.08995 * 109.47216 * 300.00010 * 16 15 12 39 39 H 1.09000 * 109.46805 * 60.00123 * 16 15 12 40 40 H 0.97001 * 119.99986 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.92476 * 179.72803 * 25 11 10 42 42 H 1.08001 * 120.07890 * 180.25515 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7615 2.5903 1.1813 6 6 4.6639 2.7754 2.1642 7 8 4.8388 1.9105 2.9989 8 6 5.4400 4.0308 2.2274 9 6 6.3766 4.2258 3.2445 10 6 7.0975 5.4006 3.2980 11 6 6.8938 6.3849 2.3470 12 16 7.8185 7.8827 2.4233 13 8 6.9908 8.8390 1.7753 14 8 8.1557 8.0169 3.7972 15 6 9.3017 7.5499 1.4335 16 6 10.1964 8.7911 1.4219 17 6 11.4288 8.5143 0.6001 18 1 11.5607 7.5498 0.1324 19 6 12.3877 9.4928 0.4444 20 7 12.2269 10.6675 1.0135 21 14 13.9151 9.1501 -0.5749 22 1 13.6603 9.5234 -1.9894 23 1 15.0508 9.9492 -0.0489 24 1 14.2484 7.7051 -0.4966 25 6 5.9635 6.2004 1.3395 26 6 5.2400 5.0280 1.2708 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 3.7399 0.5065 1.0921 33 1 2.4773 1.2356 2.1130 34 1 6.5356 3.4589 3.9882 35 1 7.8219 5.5530 4.0844 36 1 9.8477 6.7121 1.8674 37 1 9.0096 7.3036 0.4126 38 1 9.6503 9.6286 0.9878 39 1 10.4886 9.0378 2.4426 40 1 12.9016 11.3558 0.9042 41 1 5.8064 6.9745 0.6029 42 1 4.5171 4.8835 0.4815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103646903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:47 Heat of formation + Delta-G solvation = -141.650846 kcal Electronic energy + Delta-G solvation = -25326.777522 eV Core-core repulsion = 21363.778231 eV Total energy + Delta-G solvation = -3962.999291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83058 -40.00229 -38.14372 -37.95894 -36.98061 -36.02945 -35.86295 -33.13355 -33.00449 -32.28384 -30.66345 -27.59480 -26.36570 -24.35562 -23.82938 -23.45020 -22.26233 -20.74349 -20.07685 -19.38418 -18.98281 -18.41188 -17.91076 -17.77596 -17.06923 -16.92098 -16.49220 -16.18234 -16.02316 -15.84225 -15.24604 -15.09307 -15.01725 -14.68946 -14.47755 -14.23862 -14.05704 -13.80889 -13.68632 -13.14712 -13.11653 -13.06113 -12.90576 -12.76487 -12.70931 -12.39759 -12.21245 -12.20146 -12.10892 -12.03675 -11.77992 -11.64823 -11.59844 -11.08072 -10.61173 -10.60741 -10.32136 -10.24108 -8.22856 -6.36082 -1.06474 -0.77874 0.12397 1.11410 1.15149 1.44206 1.45187 1.54944 1.56192 1.97361 2.34156 2.41379 2.91214 3.10963 3.13739 3.34959 3.62829 3.76015 3.85468 3.96384 4.02510 4.05645 4.10747 4.11861 4.29590 4.32662 4.38011 4.42963 4.74841 4.79037 4.79840 4.80439 4.88281 4.93056 5.02325 5.06490 5.23235 5.32663 5.33494 5.53632 5.71044 5.72235 5.80665 6.09306 6.45634 6.77804 7.33921 8.89097 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.002019 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.804615 B =13867.152785 C =14456.507376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.168 4.168 3 C -0.088 4.088 4 C 0.067 3.933 5 O -0.347 6.347 6 C 0.515 3.485 7 O -0.523 6.523 8 C -0.088 4.088 9 C -0.077 4.077 10 C -0.041 4.041 11 C -0.623 4.623 12 S 2.492 3.508 13 O -0.970 6.970 14 O -0.973 6.973 15 C -0.561 4.561 16 C 0.016 3.984 17 C -0.538 4.538 18 H 0.077 0.923 19 C -0.002 4.002 20 N -0.932 5.932 21 Si 0.971 3.029 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.259 1.259 25 C -0.042 4.042 26 C -0.073 4.073 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.013 0.987 39 H 0.011 0.989 40 H 0.266 0.734 41 H 0.166 0.834 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.639 -21.172 -2.599 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.186 4.186 3 C -0.125 4.125 4 C -0.006 4.006 5 O -0.264 6.264 6 C 0.360 3.640 7 O -0.413 6.413 8 C -0.090 4.090 9 C -0.096 4.096 10 C -0.060 4.060 11 C -0.710 4.710 12 S 2.678 3.322 13 O -0.967 6.967 14 O -0.970 6.970 15 C -0.694 4.694 16 C -0.022 4.022 17 C -0.577 4.577 18 H 0.095 0.905 19 C -0.200 4.200 20 N -0.572 5.572 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.183 1.183 25 C -0.061 4.061 26 C -0.092 4.092 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.184 0.816 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -20.843 -20.555 -1.880 29.334 hybrid contribution 0.926 -0.572 -0.410 1.163 sum -19.917 -21.127 -2.290 29.126 Atomic orbital electron populations 1.24122 0.95825 1.03008 0.98824 1.22785 0.96265 0.97724 1.01857 1.20682 0.97389 0.97091 0.97306 1.23280 0.94117 0.82443 1.00774 1.86508 1.49409 1.41849 1.48598 1.21156 0.77726 0.86562 0.78559 1.90844 1.65749 1.44743 1.39987 1.19540 0.98066 0.92724 0.98631 1.21524 0.93279 0.97674 0.97135 1.21159 0.97666 0.90953 0.96230 1.30797 1.14151 1.20990 1.05112 1.05436 0.76863 0.74644 0.75276 1.93493 1.66644 1.59125 1.77442 1.93492 1.85097 1.85738 1.32660 1.30071 1.14937 1.09029 1.15331 1.18907 0.94867 0.90886 0.97588 1.21521 1.04167 1.00205 1.31806 0.90455 1.26060 1.02169 0.94765 0.97056 1.70095 1.36655 1.05282 1.45166 0.85352 0.77844 0.78798 0.78502 1.19682 1.21062 1.18266 1.21297 0.91533 0.97809 0.95445 1.21828 0.98339 0.91173 0.97814 0.87927 0.87118 0.86301 0.89818 0.89057 0.90581 0.91011 0.82438 0.82029 0.83311 0.83079 0.96915 0.97050 0.92468 0.81641 0.80770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 14.32 67.79 0.97 -0.37 16 2 C -0.17 -1.40 9.52 25.65 0.24 -1.15 16 3 C -0.09 -0.81 6.04 29.85 0.18 -0.62 16 4 C 0.07 0.89 5.46 71.98 0.39 1.28 16 5 O -0.35 -5.87 9.47 -56.13 -0.53 -6.40 16 6 C 0.51 10.72 7.90 70.33 0.56 11.27 16 7 O -0.52 -13.24 16.14 19.94 0.32 -12.92 16 8 C -0.09 -1.80 5.87 -20.10 -0.12 -1.92 16 9 C -0.08 -1.62 9.60 22.54 0.22 -1.40 16 10 C -0.04 -0.95 9.45 22.23 0.21 -0.74 16 11 C -0.62 -15.76 5.66 22.33 0.13 -15.63 16 12 S 2.49 82.52 5.15 -56.49 -0.29 82.23 16 13 O -0.97 -37.09 17.10 -127.65 -2.18 -39.28 16 14 O -0.97 -37.83 17.11 -127.65 -2.18 -40.02 16 15 C -0.56 -19.40 5.92 71.99 0.43 -18.97 16 16 C 0.02 0.80 4.98 29.85 0.15 0.95 16 17 C -0.54 -28.67 9.11 25.60 0.23 -28.44 16 18 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 19 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 20 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 21 Si 0.97 42.30 29.54 68.60 2.03 44.32 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 25 C -0.04 -0.90 9.45 22.23 0.21 -0.69 16 26 C -0.07 -1.31 9.62 22.53 0.22 -1.09 16 27 H 0.10 0.67 7.84 -2.91 -0.02 0.65 16 28 H 0.11 0.60 8.06 -2.91 -0.02 0.58 16 29 H 0.12 0.82 8.06 -2.91 -0.02 0.79 16 30 H 0.08 0.72 7.79 -2.39 -0.02 0.70 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.16 2.89 7.65 -2.91 -0.02 2.86 16 35 H 0.16 3.38 7.56 -2.91 -0.02 3.35 16 36 H 0.15 4.39 8.14 -2.39 -0.02 4.37 16 37 H 0.15 4.38 8.14 -2.39 -0.02 4.37 16 38 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.17 3.07 7.55 -2.91 -0.02 3.05 16 42 H 0.17 2.12 7.61 -2.91 -0.02 2.09 16 Total: -1.00 -74.89 382.63 2.93 -71.96 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.01 Total: 12.38 kcal Atomic # 6 Polarization: -61.66 SS G_CDS: 4.48 Total: -57.18 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.28 Total: -55.10 kcal Atomic # 8 Polarization: -94.03 SS G_CDS: -4.58 Total: -98.61 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 82.52 SS G_CDS: -0.29 Total: 82.23 kcal Total: -74.89 2.93 -71.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103646903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.688 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds