Wall clock time and date at job start Tue Mar 31 2020 21:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48491 * 109.47281 * 269.99701 * 3 2 1 5 5 H 1.48501 * 109.47224 * 30.00184 * 3 2 1 6 6 H 1.48508 * 109.46559 * 149.99924 * 3 2 1 7 7 C 1.37881 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00120 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99500 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46691 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47126 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54415 * 291.62745 * 11 10 9 13 13 O 1.42099 * 110.53988 * 68.37851 * 11 10 9 14 14 N 1.65596 * 104.45094 * 180.02562 * 11 10 9 15 15 C 1.46692 * 121.34017 * 261.12280 * 14 11 10 16 16 C 1.51217 * 109.44713 * 135.47199 * 15 14 11 17 17 C 1.38840 * 117.77756 * 191.05416 * 16 15 14 18 18 C 1.37952 * 120.50725 * 181.34704 * 17 16 15 19 19 C 1.38272 * 119.71682 * 359.97400 * 18 17 16 20 20 C 1.37907 * 119.82479 * 359.75645 * 19 18 17 21 21 C 1.37660 * 122.36678 * 11.94053 * 16 15 14 22 22 C 1.50600 * 122.86324 * 358.32062 * 21 16 15 23 23 C 1.47231 * 121.33762 * 81.40186 * 14 11 10 24 24 H 1.09000 * 109.77443 * 124.57499 * 23 14 11 25 25 C 1.50700 * 109.77371 * 3.83288 * 23 14 11 26 26 N 1.34776 * 120.00020 * 123.14664 * 25 23 14 27 27 O 1.21278 * 119.99625 * 303.14558 * 25 23 14 28 28 H 0.96998 * 119.99871 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.46987 * 60.00669 * 9 7 2 30 30 H 1.09003 * 109.47289 * 300.00087 * 9 7 2 31 31 H 1.09003 * 109.47229 * 300.00006 * 10 9 7 32 32 H 1.09005 * 109.47060 * 60.00355 * 10 9 7 33 33 H 1.08999 * 109.43424 * 255.63679 * 15 14 11 34 34 H 1.08998 * 109.43625 * 15.50671 * 15 14 11 35 35 H 1.08000 * 119.74406 * 1.37278 * 17 16 15 36 36 H 1.08004 * 120.14593 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.08901 * 179.77262 * 19 18 17 38 38 H 1.07997 * 119.70731 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.20094 * 259.79132 * 22 21 16 40 40 H 1.09004 * 109.19590 * 140.50524 * 22 21 16 41 41 H 0.97001 * 120.00239 * 0.02562 * 26 25 23 42 42 H 0.96996 * 119.99634 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 16 5.8354 -2.6367 0.0009 12 8 6.3341 -2.1462 -1.2360 13 8 6.3341 -2.1465 1.2380 14 7 6.2486 -4.2403 0.0001 15 6 6.6262 -4.9315 1.2376 16 6 5.9367 -6.2762 1.2937 17 6 5.9819 -6.9771 2.4913 18 6 5.3956 -8.2213 2.5972 19 6 4.7577 -8.7739 1.5019 20 6 4.7074 -8.0762 0.3134 21 6 5.2939 -6.8207 0.2050 22 6 5.1892 -6.1133 -1.1204 23 6 6.2575 -5.0280 -1.2437 24 1 7.2363 -5.4873 -1.3824 25 6 5.9433 -4.1342 -2.4156 26 7 6.8072 -4.0456 -3.4463 27 8 4.9130 -3.4946 -2.4312 28 1 -0.4850 0.8400 0.0004 29 1 3.8744 -0.6802 0.8912 30 1 3.8752 -0.6804 -0.8888 31 1 3.6577 -3.1506 0.8907 32 1 3.6584 -3.1502 -0.8893 33 1 7.7068 -5.0728 1.2588 34 1 6.3226 -4.3315 2.0954 35 1 6.4795 -6.5446 3.3468 36 1 5.4339 -8.7612 3.5318 37 1 4.2999 -9.7491 1.5770 38 1 4.2084 -8.5094 -0.5408 39 1 4.2030 -5.6568 -1.2062 40 1 5.3193 -6.8375 -1.9245 41 1 7.6311 -4.5574 -3.4340 42 1 6.6051 -3.4700 -4.2003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104109011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:33 Heat of formation + Delta-G solvation = -72.004274 kcal Electronic energy + Delta-G solvation = -28397.989937 eV Core-core repulsion = 24470.303499 eV Total energy + Delta-G solvation = -3927.686438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.60146 -39.33753 -36.73078 -36.20656 -35.50919 -33.87167 -33.62527 -33.00249 -31.36484 -31.29921 -29.68818 -25.87602 -25.30265 -24.84389 -22.45752 -21.25649 -21.15024 -20.22352 -18.65601 -17.93618 -17.32599 -16.97678 -16.84999 -16.31660 -15.92378 -15.41250 -15.21572 -15.12052 -14.67542 -14.54400 -14.18331 -14.06188 -13.89695 -13.42779 -13.28946 -13.00173 -12.82480 -12.71322 -12.51564 -11.83509 -11.75785 -11.71564 -11.63780 -11.49103 -11.25069 -11.10149 -11.03162 -11.02592 -10.31330 -10.14453 -9.72155 -9.68441 -9.58644 -9.34220 -9.05079 -8.84650 -8.73243 -8.54424 -6.04929 -4.03974 0.70591 1.17031 1.19690 2.40939 2.94247 3.33144 3.34455 3.40521 3.45809 3.55953 4.22171 4.33730 4.40229 4.46177 4.62818 4.67040 4.75416 4.78615 4.84254 4.94176 5.09686 5.19154 5.27540 5.32096 5.37319 5.45129 5.61377 5.68656 5.76776 5.83728 5.89967 5.94525 6.22755 6.32980 6.34346 6.50726 6.51979 6.81273 6.82323 7.05837 7.14474 7.26092 7.68775 8.27241 8.51026 8.97896 9.55527 11.07904 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.004309 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.111228 B = 6495.978247 C = 7229.910549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.509 4.509 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.571 4.571 11 S 2.587 3.413 12 O -0.953 6.953 13 O -0.970 6.970 14 N -0.996 5.996 15 C 0.165 3.835 16 C -0.092 4.092 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.062 4.062 22 C -0.091 4.091 23 C 0.142 3.858 24 H 0.098 0.902 25 C 0.520 3.480 26 N -0.836 5.836 27 O -0.518 6.518 28 H 0.265 0.735 29 H 0.025 0.975 30 H 0.027 0.973 31 H 0.116 0.884 32 H 0.150 0.850 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.398 0.602 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.879 -19.620 -1.282 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.548 4.548 8 H 0.096 0.904 9 C -0.041 4.041 10 C -0.706 4.706 11 S 2.687 3.313 12 O -0.943 6.943 13 O -0.960 6.960 14 N -0.832 5.832 15 C 0.040 3.960 16 C -0.094 4.094 17 C -0.131 4.131 18 C -0.139 4.139 19 C -0.137 4.137 20 C -0.136 4.136 21 C -0.063 4.063 22 C -0.130 4.130 23 C 0.032 3.968 24 H 0.116 0.884 25 C 0.302 3.698 26 N -0.399 5.399 27 O -0.394 6.394 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.134 0.866 32 H 0.168 0.832 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.226 0.774 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 16.696 -18.419 -1.118 24.885 hybrid contribution 0.104 0.393 -0.240 0.472 sum 16.800 -18.027 -1.359 24.679 Atomic orbital electron populations 1.69889 1.06147 1.27011 1.50722 1.24968 0.94790 0.99013 0.94380 0.86937 0.80672 0.83849 0.79050 1.19734 1.20844 1.18756 1.20854 0.87858 0.94824 1.51307 0.90442 1.19347 0.99784 0.87699 0.97279 1.30377 1.19468 1.09094 1.11626 1.05868 0.79856 0.71686 0.73841 1.93523 1.79417 1.76916 1.44421 1.93519 1.79755 1.77272 1.45473 1.58066 1.84327 1.29321 1.11490 1.20318 0.98953 0.90262 0.86428 1.19940 0.99368 0.96426 0.93648 1.21063 1.00104 0.95042 0.96922 1.21066 0.98438 0.95715 0.98688 1.21068 0.99512 0.99968 0.93184 1.21154 0.99796 0.94318 0.98295 1.19307 0.98039 0.94372 0.94542 1.20807 1.00408 0.96617 0.95130 1.20771 1.01010 0.91819 0.83229 0.88444 1.20130 0.84320 0.81229 0.84079 1.43498 1.23549 1.49827 1.23060 1.90828 1.25833 1.43858 1.78891 0.92555 0.95642 0.95441 0.86595 0.83248 0.89808 0.87470 0.85641 0.85951 0.86059 0.85944 0.88240 0.89173 0.77441 0.76045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 22.64 27.47 -169.99 -4.67 17.97 16 4 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 7 C -0.51 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 9 C 0.00 -0.04 4.05 -27.88 -0.11 -0.16 16 10 C -0.57 -12.21 5.68 37.16 0.21 -12.00 16 11 S 2.59 48.93 4.81 -107.50 -0.52 48.41 16 12 O -0.95 -19.50 13.87 -67.12 -0.93 -20.43 16 13 O -0.97 -20.12 16.64 -57.54 -0.96 -21.08 16 14 N -1.00 -13.81 3.18 -108.98 -0.35 -14.16 16 15 C 0.17 1.92 6.10 -4.84 -0.03 1.89 16 16 C -0.09 -1.01 5.83 -104.36 -0.61 -1.62 16 17 C -0.11 -1.08 9.62 -39.46 -0.38 -1.46 16 18 C -0.12 -1.06 10.05 -39.67 -0.40 -1.46 16 19 C -0.12 -1.05 10.04 -39.69 -0.40 -1.45 16 20 C -0.12 -1.11 9.59 -39.42 -0.38 -1.49 16 21 C -0.06 -0.67 5.76 -104.60 -0.60 -1.27 16 22 C -0.09 -0.94 5.20 -28.04 -0.15 -1.09 16 23 C 0.14 1.60 3.29 -68.79 -0.23 1.38 16 24 H 0.10 0.76 7.93 -51.93 -0.41 0.35 16 25 C 0.52 7.12 4.63 -10.99 -0.05 7.07 16 26 N -0.84 -8.08 8.87 31.22 0.28 -7.80 16 27 O -0.52 -9.55 12.22 -18.56 -0.23 -9.78 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 30 H 0.03 0.72 7.57 -51.93 -0.39 0.33 16 31 H 0.12 2.29 8.14 -51.92 -0.42 1.86 16 32 H 0.15 3.20 5.74 -51.92 -0.30 2.90 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.11 1.30 7.14 -51.93 -0.37 0.93 16 35 H 0.13 0.96 8.05 -52.49 -0.42 0.54 16 36 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.93 8.05 -52.49 -0.42 0.51 16 39 H 0.10 1.22 7.82 -51.93 -0.41 0.82 16 40 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.40 2.25 8.68 -40.82 -0.35 1.89 16 42 H 0.41 3.85 8.93 -40.82 -0.36 3.49 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -38.74 350.66 -10.38 -49.12 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.52 Total: 5.16 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -3.55 Total: -25.16 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.70 Total: -49.51 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -2.12 Total: -51.28 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Atomic # 16 Polarization: 48.93 SS G_CDS: -0.52 Total: 48.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.74 -10.38 -49.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104109011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.885 kcal (2) G-P(sol) polarization free energy of solvation -38.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds