Wall clock time and date at job start Tue Mar 31 2020 21:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99788 * 2 1 4 4 H 1.48501 * 109.47417 * 270.00210 * 3 2 1 5 5 H 1.48498 * 109.47381 * 30.00703 * 3 2 1 6 6 H 1.48505 * 109.46823 * 150.00395 * 3 2 1 7 7 C 1.37875 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00298 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99933 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47506 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47342 * 179.97438 * 10 9 7 12 12 O 1.42095 * 110.54404 * 68.37347 * 11 10 9 13 13 O 1.42105 * 110.54019 * 291.61934 * 11 10 9 14 14 N 1.65592 * 104.44946 * 179.97438 * 11 10 9 15 15 C 1.46507 * 120.00294 * 64.99435 * 14 11 10 16 16 C 1.50697 * 109.47005 * 164.99908 * 15 14 11 17 17 O 1.21283 * 120.00521 * 359.73077 * 16 15 14 18 18 N 1.34784 * 119.99774 * 180.02562 * 16 15 14 19 19 C 1.46536 * 124.97894 * 179.72714 * 18 16 15 20 20 C 1.53742 * 105.19333 * 179.97438 * 19 18 16 21 21 C 1.51207 * 104.58577 * 0.02562 * 20 19 18 22 22 C 1.38187 * 130.97329 * 179.97438 * 21 20 19 23 23 C 1.38239 * 120.14710 * 179.16228 * 22 21 20 24 24 C 1.38300 * 119.82633 * 0.82342 * 23 22 21 25 25 C 1.37841 * 120.22003 * 359.47894 * 24 23 22 26 26 C 1.38565 * 108.56027 * 359.75748 * 21 20 19 27 27 H 0.97001 * 120.00002 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47663 * 59.98898 * 9 7 2 29 29 H 1.09002 * 109.47025 * 299.99310 * 9 7 2 30 30 H 1.09000 * 109.47250 * 59.99024 * 10 9 7 31 31 H 1.09004 * 109.46344 * 299.99506 * 10 9 7 32 32 H 0.97000 * 120.00547 * 244.99860 * 14 11 10 33 33 H 1.09001 * 109.46566 * 45.00704 * 15 14 11 34 34 H 1.08993 * 109.47390 * 285.00494 * 15 14 11 35 35 H 1.08992 * 110.29815 * 298.90827 * 19 18 16 36 36 H 1.08998 * 110.29640 * 60.95581 * 19 18 16 37 37 H 1.09003 * 110.41213 * 118.77844 * 20 19 18 38 38 H 1.09002 * 110.41310 * 241.22278 * 20 19 18 39 39 H 1.07996 * 119.92888 * 0.03862 * 22 21 20 40 40 H 1.08001 * 120.08748 * 180.33133 * 23 22 21 41 41 H 1.07993 * 119.89019 * 179.51130 * 24 23 22 42 42 H 1.08009 * 119.85418 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 16 5.8355 -2.6366 -0.0001 12 8 6.3341 -2.1463 1.2368 13 8 6.3340 -2.1462 -1.2372 14 7 6.2487 -4.2401 0.0004 15 6 5.9121 -5.0838 -1.1491 16 6 6.6969 -6.3682 -1.0763 17 8 7.4657 -6.5581 -0.1577 18 7 6.5489 -7.3036 -2.0354 19 6 7.2590 -8.5848 -2.0761 20 6 6.7519 -9.2864 -3.3466 21 6 5.7609 -8.3155 -3.9480 22 6 4.9897 -8.3998 -5.0915 23 6 4.1311 -7.3698 -5.4274 24 6 4.0580 -6.2458 -4.6248 25 6 4.8300 -6.1548 -3.4865 26 6 5.6914 -7.1958 -3.1347 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6807 0.8904 29 1 3.8751 -0.6798 -0.8895 30 1 3.6584 -3.1503 -0.8902 31 1 3.6578 -3.1505 0.8898 32 1 6.7135 -4.6210 0.7619 33 1 6.1607 -4.5579 -2.0708 34 1 4.8456 -5.3083 -1.1351 35 1 8.3344 -8.4192 -2.1392 36 1 7.0194 -9.1780 -1.1936 37 1 7.5761 -9.4644 -4.0373 38 1 6.2589 -10.2245 -3.0918 39 1 5.0473 -9.2785 -5.7167 40 1 3.5249 -7.4390 -6.3185 41 1 3.3934 -5.4371 -4.8905 42 1 4.7679 -5.2745 -2.8638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111337014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:12 Heat of formation + Delta-G solvation = -65.392178 kcal Electronic energy + Delta-G solvation = -26853.050065 eV Core-core repulsion = 22925.650349 eV Total energy + Delta-G solvation = -3927.399716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.59973 -39.26203 -36.84442 -36.66273 -35.66306 -34.95726 -33.99831 -33.19119 -31.52686 -30.10159 -29.59620 -27.58539 -26.02738 -23.62595 -23.45380 -21.71701 -21.36769 -20.37538 -19.19504 -18.17435 -17.42688 -16.98364 -16.86572 -16.65361 -16.45212 -15.83381 -15.66490 -15.14613 -15.04926 -14.75782 -14.33410 -14.10710 -13.86150 -13.59272 -13.41387 -13.18210 -13.05738 -12.82964 -12.59138 -12.32501 -11.94879 -11.89557 -11.88218 -11.79918 -11.71591 -11.29587 -11.24974 -11.18702 -10.66773 -10.53938 -10.49090 -10.21242 -9.95013 -9.57245 -9.28798 -9.15994 -8.68899 -8.19724 -6.19249 -4.20898 0.53871 0.86227 1.00266 2.16847 2.22337 2.91282 3.24905 3.32701 3.36876 3.42713 3.74718 4.03386 4.05555 4.22987 4.33652 4.47492 4.56640 4.60097 4.74134 4.80779 4.89636 4.93815 4.99693 5.11829 5.12790 5.19557 5.24967 5.40228 5.41129 5.43769 5.58081 5.60769 5.74080 6.00206 6.09209 6.21371 6.23237 6.54853 6.76851 6.84986 6.90391 7.02761 7.48103 7.51336 8.33175 8.81467 9.40300 10.92987 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.003197 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.395192 B = 8755.075165 C =10257.973427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.583 4.583 11 S 2.590 3.410 12 O -0.958 6.958 13 O -0.964 6.964 14 N -1.117 6.117 15 C 0.093 3.907 16 C 0.528 3.472 17 O -0.507 6.507 18 N -0.552 5.552 19 C 0.107 3.893 20 C -0.086 4.086 21 C -0.135 4.135 22 C -0.074 4.074 23 C -0.140 4.140 24 C -0.079 4.079 25 C -0.159 4.159 26 C 0.138 3.862 27 H 0.267 0.733 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.423 0.577 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.191 -20.598 -10.492 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.716 4.716 11 S 2.687 3.313 12 O -0.948 6.948 13 O -0.954 6.954 14 N -0.877 5.877 15 C -0.037 4.037 16 C 0.317 3.683 17 O -0.381 6.381 18 N -0.276 5.276 19 C -0.014 4.014 20 C -0.123 4.123 21 C -0.138 4.138 22 C -0.093 4.093 23 C -0.159 4.159 24 C -0.098 4.098 25 C -0.180 4.180 26 C 0.043 3.957 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.260 0.740 33 H 0.136 0.864 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.124 -19.750 -9.963 25.225 hybrid contribution -0.130 0.285 0.296 0.430 sum 11.994 -19.465 -9.668 24.824 Atomic orbital electron populations 1.69877 1.06212 1.27296 1.49875 1.24978 0.94817 0.99167 0.94094 0.86931 0.80733 0.83693 0.79140 1.19643 1.20761 1.18589 1.20828 0.87721 0.94928 1.52436 0.90364 1.19425 0.99963 0.87240 0.98029 1.30323 1.20724 1.09506 1.11081 1.05699 0.79238 0.71940 0.74390 1.93580 1.79163 1.77141 1.44935 1.93553 1.78494 1.77707 1.45615 1.55714 1.75328 1.29741 1.26903 1.21555 0.99858 0.90421 0.91829 1.20467 0.82694 0.84383 0.80787 1.90727 1.36411 1.78279 1.32701 1.45898 1.40437 1.18801 1.22508 1.22077 0.97563 0.82681 0.99100 1.21130 0.97847 0.97935 0.95365 1.19977 1.01301 0.95780 0.96759 1.20428 0.94905 0.99032 0.94905 1.21108 0.99947 0.94091 1.00708 1.21025 0.97490 0.98103 0.93177 1.21119 0.98365 0.98569 0.99905 1.18392 0.92970 0.96164 0.88152 0.92348 0.94812 0.95230 0.85698 0.85164 0.73987 0.86387 0.87678 0.89705 0.89670 0.88965 0.88931 0.85608 0.85293 0.84588 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.12 9.66 -34.44 -0.33 -14.45 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 10 C -0.58 -10.11 6.01 37.16 0.22 -9.88 16 11 S 2.59 43.42 5.46 -107.50 -0.59 42.84 16 12 O -0.96 -19.02 18.08 -57.54 -1.04 -20.06 16 13 O -0.96 -18.25 17.50 -57.54 -1.01 -19.26 16 14 N -1.12 -15.10 5.82 -11.65 -0.07 -15.17 16 15 C 0.09 1.08 4.44 -5.19 -0.02 1.05 16 16 C 0.53 6.52 7.87 -10.98 -0.09 6.43 16 17 O -0.51 -7.53 16.02 5.56 0.09 -7.44 16 18 N -0.55 -5.71 3.13 -112.90 -0.35 -6.06 16 19 C 0.11 0.83 7.06 -3.64 -0.03 0.80 16 20 C -0.09 -0.49 6.93 -27.25 -0.19 -0.68 16 21 C -0.14 -1.08 6.23 -104.27 -0.65 -1.73 16 22 C -0.07 -0.52 10.04 -39.60 -0.40 -0.91 16 23 C -0.14 -1.01 10.06 -39.56 -0.40 -1.41 16 24 C -0.08 -0.66 10.02 -39.70 -0.40 -1.06 16 25 C -0.16 -1.50 8.88 -39.21 -0.35 -1.85 16 26 C 0.14 1.34 6.59 -83.57 -0.55 0.79 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 29 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 30 H 0.12 1.84 8.14 -51.92 -0.42 1.41 16 31 H 0.13 2.06 8.14 -51.92 -0.42 1.64 16 32 H 0.42 5.62 7.67 -34.47 -0.26 5.36 16 33 H 0.12 1.28 6.51 -51.93 -0.34 0.94 16 34 H 0.11 0.95 6.87 -51.93 -0.36 0.59 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.14 1.19 4.21 -52.48 -0.22 0.97 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -36.59 360.83 -10.15 -46.73 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.34 Total: 3.56 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -3.39 Total: -21.23 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.35 Total: -47.02 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -1.96 Total: -46.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 43.42 SS G_CDS: -0.59 Total: 42.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.59 -10.15 -46.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111337014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.658 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds