Wall clock time and date at job start Tue Mar 31 2020 21:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99788 * 2 1 4 4 H 1.48501 * 109.47417 * 270.00210 * 3 2 1 5 5 H 1.48498 * 109.47381 * 30.00703 * 3 2 1 6 6 H 1.48505 * 109.46823 * 150.00395 * 3 2 1 7 7 C 1.37875 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00298 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99933 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47506 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47342 * 179.97438 * 10 9 7 12 12 O 1.42095 * 110.54404 * 68.37347 * 11 10 9 13 13 O 1.42105 * 110.54019 * 291.61934 * 11 10 9 14 14 N 1.65592 * 104.44946 * 179.97438 * 11 10 9 15 15 C 1.46507 * 120.00294 * 64.99435 * 14 11 10 16 16 C 1.50697 * 109.47005 * 164.99908 * 15 14 11 17 17 O 1.21283 * 120.00521 * 359.73077 * 16 15 14 18 18 N 1.34784 * 119.99774 * 180.02562 * 16 15 14 19 19 C 1.46536 * 124.97894 * 179.72714 * 18 16 15 20 20 C 1.53742 * 105.19333 * 179.97438 * 19 18 16 21 21 C 1.51207 * 104.58577 * 0.02562 * 20 19 18 22 22 C 1.38187 * 130.97329 * 179.97438 * 21 20 19 23 23 C 1.38239 * 120.14710 * 179.16228 * 22 21 20 24 24 C 1.38300 * 119.82633 * 0.82342 * 23 22 21 25 25 C 1.37841 * 120.22003 * 359.47894 * 24 23 22 26 26 C 1.38565 * 108.56027 * 359.75748 * 21 20 19 27 27 H 0.97001 * 120.00002 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47663 * 59.98898 * 9 7 2 29 29 H 1.09002 * 109.47025 * 299.99310 * 9 7 2 30 30 H 1.09000 * 109.47250 * 59.99024 * 10 9 7 31 31 H 1.09004 * 109.46344 * 299.99506 * 10 9 7 32 32 H 0.97000 * 120.00547 * 244.99860 * 14 11 10 33 33 H 1.09001 * 109.46566 * 45.00704 * 15 14 11 34 34 H 1.08993 * 109.47390 * 285.00494 * 15 14 11 35 35 H 1.08992 * 110.29815 * 298.90827 * 19 18 16 36 36 H 1.08998 * 110.29640 * 60.95581 * 19 18 16 37 37 H 1.09003 * 110.41213 * 118.77844 * 20 19 18 38 38 H 1.09002 * 110.41310 * 241.22278 * 20 19 18 39 39 H 1.07996 * 119.92888 * 0.03862 * 22 21 20 40 40 H 1.08001 * 120.08748 * 180.33133 * 23 22 21 41 41 H 1.07993 * 119.89019 * 179.51130 * 24 23 22 42 42 H 1.08009 * 119.85418 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 16 5.8355 -2.6366 -0.0001 12 8 6.3341 -2.1463 1.2368 13 8 6.3340 -2.1462 -1.2372 14 7 6.2487 -4.2401 0.0004 15 6 5.9121 -5.0838 -1.1491 16 6 6.6969 -6.3682 -1.0763 17 8 7.4657 -6.5581 -0.1577 18 7 6.5489 -7.3036 -2.0354 19 6 7.2590 -8.5848 -2.0761 20 6 6.7519 -9.2864 -3.3466 21 6 5.7609 -8.3155 -3.9480 22 6 4.9897 -8.3998 -5.0915 23 6 4.1311 -7.3698 -5.4274 24 6 4.0580 -6.2458 -4.6248 25 6 4.8300 -6.1548 -3.4865 26 6 5.6914 -7.1958 -3.1347 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6807 0.8904 29 1 3.8751 -0.6798 -0.8895 30 1 3.6584 -3.1503 -0.8902 31 1 3.6578 -3.1505 0.8898 32 1 6.7135 -4.6210 0.7619 33 1 6.1607 -4.5579 -2.0708 34 1 4.8456 -5.3083 -1.1351 35 1 8.3344 -8.4192 -2.1392 36 1 7.0194 -9.1780 -1.1936 37 1 7.5761 -9.4644 -4.0373 38 1 6.2589 -10.2245 -3.0918 39 1 5.0473 -9.2785 -5.7167 40 1 3.5249 -7.4390 -6.3185 41 1 3.3934 -5.4371 -4.8905 42 1 4.7679 -5.2745 -2.8638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111337014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:11 Heat of formation + Delta-G solvation = -92.154617 kcal Electronic energy + Delta-G solvation = -26854.210572 eV Core-core repulsion = 22925.650349 eV Total energy + Delta-G solvation = -3928.560222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.31401 -40.07115 -38.27244 -37.37261 -37.11895 -36.00150 -35.88402 -33.86976 -33.46484 -30.73344 -30.20096 -28.47657 -27.88954 -24.26098 -24.13290 -23.20474 -22.28664 -21.19885 -20.42398 -19.48385 -19.01167 -18.00196 -17.85140 -17.61656 -17.28019 -17.05821 -16.62705 -16.36028 -16.22857 -15.92598 -15.42885 -15.29875 -14.85964 -14.80433 -14.43810 -14.30677 -13.78983 -13.74296 -13.66167 -13.31519 -13.26571 -13.20784 -13.10673 -13.06496 -12.95846 -12.92735 -12.43293 -12.23060 -11.95102 -11.76491 -11.70603 -11.49160 -11.38855 -11.30838 -10.81756 -10.65335 -9.74464 -8.86408 -8.34054 -6.39408 -0.83542 0.18443 0.41839 1.32819 1.33982 1.36835 1.38709 1.46077 1.76070 2.31714 2.68249 2.83538 2.96291 3.00389 3.16315 3.47507 3.61152 3.83295 3.91151 3.98901 4.05489 4.07680 4.13543 4.16676 4.27246 4.41175 4.51274 4.58981 4.59644 4.64034 4.94380 4.96168 5.02610 5.08870 5.11243 5.15243 5.39398 5.49328 5.51765 5.64668 5.81271 5.97701 6.19076 6.22148 6.61946 6.67009 7.25013 8.81225 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.003197 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.395192 B = 8755.075165 C =10257.973427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.015 3.985 3 Si 0.922 3.078 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.524 4.524 8 H 0.053 0.947 9 C -0.019 4.019 10 C -0.584 4.584 11 S 2.622 3.378 12 O -0.989 6.989 13 O -0.984 6.984 14 N -1.107 6.107 15 C 0.083 3.917 16 C 0.525 3.475 17 O -0.543 6.543 18 N -0.551 5.551 19 C 0.097 3.903 20 C -0.077 4.077 21 C -0.137 4.137 22 C -0.076 4.076 23 C -0.138 4.138 24 C -0.095 4.095 25 C -0.175 4.175 26 C 0.109 3.891 27 H 0.269 0.731 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.426 0.574 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.061 -21.926 -12.050 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.184 4.184 3 Si 0.745 3.255 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.174 1.174 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.058 4.058 10 C -0.717 4.717 11 S 2.718 3.282 12 O -0.979 6.979 13 O -0.974 6.974 14 N -0.869 5.869 15 C -0.046 4.046 16 C 0.314 3.686 17 O -0.420 6.420 18 N -0.274 5.274 19 C -0.023 4.023 20 C -0.114 4.114 21 C -0.139 4.139 22 C -0.094 4.094 23 C -0.156 4.156 24 C -0.114 4.114 25 C -0.195 4.195 26 C 0.015 3.985 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.169 0.831 31 H 0.163 0.837 32 H 0.264 0.736 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.986 -21.098 -11.557 27.337 hybrid contribution -0.453 0.538 0.680 0.978 sum 12.533 -20.560 -10.877 26.422 Atomic orbital electron populations 1.70001 1.07851 1.28314 1.51755 1.25830 0.95576 1.02883 0.94091 0.86066 0.79898 0.79606 0.79913 1.18354 1.20272 1.17412 1.21153 0.90085 0.93931 1.51147 0.92873 1.19401 0.97306 0.90924 0.98148 1.30278 1.21552 1.06586 1.13277 1.04568 0.78349 0.72156 0.73102 1.93535 1.79616 1.78448 1.46307 1.93524 1.78709 1.78723 1.46416 1.55323 1.75009 1.28852 1.27757 1.21880 1.01436 0.90154 0.91123 1.20501 0.82405 0.84852 0.80858 1.90705 1.38024 1.79091 1.34158 1.45931 1.40396 1.19048 1.22054 1.22323 0.97612 0.81913 1.00496 1.21189 0.98009 0.97793 0.94390 1.20337 1.01375 0.95587 0.96642 1.20778 0.94096 0.99832 0.94712 1.21455 0.99711 0.93523 1.00961 1.21250 0.97782 0.99083 0.93263 1.21276 0.98901 0.98777 1.00554 1.18617 0.93863 0.97331 0.88683 0.92184 0.95065 0.94534 0.83096 0.83739 0.73584 0.85647 0.85086 0.89606 0.89388 0.87044 0.86952 0.82856 0.83152 0.83829 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.63 13.96 21.45 0.30 -56.33 16 2 C 0.01 0.84 5.47 84.65 0.46 1.30 16 3 Si 0.92 42.97 27.47 68.60 1.88 44.86 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.52 -28.55 9.66 25.60 0.25 -28.30 16 8 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 9 C -0.02 -0.83 4.05 29.85 0.12 -0.71 16 10 C -0.58 -19.49 6.01 71.98 0.43 -19.05 16 11 S 2.62 85.02 5.46 -56.49 -0.31 84.71 16 12 O -0.99 -38.54 18.08 -127.65 -2.31 -40.85 16 13 O -0.98 -36.09 17.50 -127.65 -2.23 -38.33 16 14 N -1.11 -28.91 5.82 -190.79 -1.11 -30.02 16 15 C 0.08 1.84 4.44 85.63 0.38 2.22 16 16 C 0.52 12.70 7.87 87.65 0.69 13.39 16 17 O -0.54 -16.12 16.02 -3.04 -0.05 -16.17 16 18 N -0.55 -10.89 3.13 -629.49 -1.97 -12.86 16 19 C 0.10 1.38 7.06 86.62 0.61 1.99 16 20 C -0.08 -0.68 6.93 30.26 0.21 -0.47 16 21 C -0.14 -1.87 6.23 -19.64 -0.12 -1.99 16 22 C -0.08 -0.83 10.04 22.26 0.22 -0.61 16 23 C -0.14 -1.65 10.06 22.28 0.22 -1.43 16 24 C -0.10 -1.45 10.02 22.19 0.22 -1.23 16 25 C -0.17 -3.11 8.88 22.51 0.20 -2.91 16 26 C 0.11 1.98 6.59 38.28 0.25 2.23 16 27 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 29 H 0.04 1.58 7.57 -2.39 -0.02 1.56 16 30 H 0.15 4.17 8.14 -2.39 -0.02 4.15 16 31 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 32 H 0.43 11.10 7.67 -96.75 -0.74 10.36 16 33 H 0.13 2.60 6.51 -2.39 -0.02 2.59 16 34 H 0.13 2.18 6.87 -2.39 -0.02 2.16 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.15 0.80 8.06 -2.91 -0.02 0.77 16 40 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.14 2.25 4.21 -2.91 -0.01 2.24 16 Total: -1.00 -79.00 360.83 -1.38 -80.38 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.26 Total: 20.20 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 4.15 Total: -35.58 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -2.78 Total: -99.21 kcal Atomic # 8 Polarization: -90.76 SS G_CDS: -4.59 Total: -95.35 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.88 Total: 44.86 kcal Atomic # 16 Polarization: 85.02 SS G_CDS: -0.31 Total: 84.71 kcal Total: -79.00 -1.38 -80.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111337014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.776 kcal (2) G-P(sol) polarization free energy of solvation -79.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds