Wall clock time and date at job start Tue Mar 31 2020 21:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 S 1.65606 * 120.59169 * 124.62091 * 12 11 10 14 14 O 1.42103 * 106.40153 * 23.56797 * 13 12 11 15 15 O 1.42098 * 106.39758 * 156.48485 * 13 12 11 16 16 C 1.76192 * 107.21728 * 270.02386 * 13 12 11 17 17 C 1.38290 * 120.11714 * 269.72320 * 16 13 12 18 18 C 1.37931 * 120.35073 * 179.97438 * 17 16 13 19 19 C 1.39287 * 120.23952 * 0.54260 * 18 17 16 20 20 C 1.38875 * 118.87713 * 359.41709 * 19 18 17 21 21 C 1.37748 * 120.78840 * 0.42171 * 20 19 18 22 22 C 1.51650 * 107.04001 * 180.67762 * 20 19 18 23 23 C 1.54706 * 101.91822 * 15.47615 * 22 20 19 24 24 O 1.36136 * 129.88079 * 179.10324 * 19 18 17 25 25 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 26 26 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 27 27 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 29 29 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 30 30 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 31 31 H 1.09001 * 109.53173 * 169.30201 * 11 10 9 32 32 H 1.07998 * 119.82284 * 0.17392 * 17 16 13 33 33 H 1.08002 * 119.87971 * 180.27919 * 18 17 16 34 34 H 1.07992 * 120.01122 * 179.80886 * 21 20 19 35 35 H 1.09000 * 110.93885 * 133.63310 * 22 20 19 36 36 H 1.08997 * 110.93851 * 257.28676 * 22 20 19 37 37 H 1.08998 * 110.74938 * 93.01760 * 23 22 20 38 38 H 1.08998 * 110.75048 * 216.18684 * 23 22 20 39 39 H 1.09004 * 109.60829 * 295.48016 * 25 12 11 40 40 H 1.08993 * 109.75563 * 175.05475 * 25 12 11 41 41 H 1.09001 * 109.60662 * 354.94142 * 26 9 7 42 42 H 1.08998 * 109.61756 * 115.28412 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 16 6.1380 -2.5191 3.5672 14 8 5.8510 -2.0420 4.8747 15 8 6.6360 -3.8245 3.3082 16 6 7.3030 -1.3950 2.8719 17 6 8.1415 -1.8071 1.8523 18 6 9.0549 -0.9310 1.3040 19 6 9.1484 0.3743 1.7809 20 6 8.3004 0.7768 2.8044 21 6 7.3865 -0.0988 3.3482 22 6 8.6168 2.2306 3.0979 23 6 9.4337 2.6382 1.8489 24 8 9.9780 1.3849 1.4017 25 6 4.5005 -3.2084 1.5123 26 6 4.1992 -2.2929 0.3191 27 1 -0.4850 0.8400 -0.0004 28 1 4.2586 0.1714 1.7186 29 1 2.5201 0.1137 2.1099 30 1 2.7995 -1.9334 3.3902 31 1 4.0699 -0.8067 3.9339 32 1 8.0785 -2.8194 1.4812 33 1 9.7030 -1.2596 0.5050 34 1 6.7353 0.2266 4.1459 35 1 7.7032 2.8201 3.1754 36 1 9.2162 2.3236 4.0035 37 1 8.7848 3.0711 1.0876 38 1 10.2287 3.3338 2.1176 39 1 3.6505 -3.8667 1.6921 40 1 5.3872 -3.8056 1.3004 41 1 3.8352 -2.8898 -0.5171 42 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129748235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:43 Heat of formation + Delta-G solvation = -31.536846 kcal Electronic energy + Delta-G solvation = -28324.940531 eV Core-core repulsion = 24399.008893 eV Total energy + Delta-G solvation = -3925.931638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.41528 -37.89527 -37.72962 -37.17871 -35.73479 -33.91433 -33.04255 -31.45229 -30.68376 -30.60508 -29.55939 -26.62665 -24.11271 -23.50649 -23.04736 -22.81538 -22.15127 -20.34198 -18.75284 -17.91812 -17.78763 -17.31811 -16.94857 -16.46946 -16.26766 -15.61506 -14.97877 -14.46929 -14.41885 -14.28053 -14.09906 -13.89684 -13.57339 -13.49640 -13.37656 -13.19150 -13.02519 -12.86277 -12.41315 -12.19843 -12.14877 -11.96521 -11.77082 -11.62954 -11.39915 -11.24297 -11.02299 -10.97180 -10.84675 -10.52297 -10.26412 -10.06256 -9.52862 -9.22638 -9.05726 -8.69386 -8.37837 -7.04572 -6.12393 -3.30164 0.44008 0.72962 1.03859 2.81822 2.98255 3.31563 3.35243 3.44682 3.48999 3.88077 3.99995 4.18150 4.47502 4.49309 4.52751 4.64919 4.82150 4.88059 4.96427 5.01258 5.06707 5.25279 5.31965 5.37390 5.41963 5.57648 5.61444 5.72350 5.75196 5.88135 5.90377 5.98173 5.99703 6.03510 6.21753 6.27156 6.36495 6.54324 6.56604 6.78099 6.81680 6.95183 7.85893 8.22600 8.86510 9.64924 10.05810 11.02077 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.005196 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.140049 B = 5387.726401 C = 6948.519863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.040 3.960 3 Si 0.831 3.169 4 H -0.293 1.293 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.273 4.273 8 H 0.083 0.917 9 N -0.596 5.596 10 C 0.131 3.869 11 C 0.101 3.899 12 N -0.986 5.986 13 S 2.693 3.307 14 O -0.962 6.962 15 O -0.962 6.962 16 C -0.701 4.701 17 C 0.018 3.982 18 C -0.158 4.158 19 C 0.157 3.843 20 C -0.198 4.198 21 C 0.033 3.967 22 C -0.110 4.110 23 C 0.049 3.951 24 O -0.301 6.301 25 C 0.104 3.896 26 C 0.131 3.869 27 H 0.263 0.737 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.942 1.654 5.613 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.161 4.161 3 Si 0.658 3.342 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.182 1.182 7 C -0.401 4.401 8 H 0.100 0.900 9 N -0.319 5.319 10 C 0.003 3.997 11 C -0.025 4.025 12 N -0.825 5.825 13 S 2.783 3.217 14 O -0.952 6.952 15 O -0.952 6.952 16 C -0.787 4.787 17 C -0.001 4.001 18 C -0.177 4.177 19 C 0.110 3.890 20 C -0.199 4.199 21 C 0.013 3.987 22 C -0.147 4.147 23 C -0.025 4.025 24 O -0.214 6.214 25 C -0.022 4.022 26 C 0.004 3.996 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 18.109 1.188 6.169 19.168 hybrid contribution 0.590 1.916 -0.634 2.103 sum 18.700 3.104 5.535 19.747 Atomic orbital electron populations 1.70124 1.06203 1.26915 1.48467 1.25195 0.94745 0.97368 0.98821 0.87640 0.82220 0.86378 0.77964 1.22121 1.22062 1.18212 1.18772 0.96505 0.96802 1.27983 0.89968 1.44193 1.18002 1.42628 1.27062 1.21790 0.99524 0.92181 0.86193 1.22277 0.91008 0.91134 0.98120 1.57423 1.31880 1.50368 1.42840 1.01927 0.72557 0.73646 0.73527 1.93549 1.84143 1.82223 1.35294 1.93547 1.80181 1.35741 1.85722 1.31089 1.21068 1.12392 1.14193 1.20640 0.90037 0.99034 0.90412 1.20351 1.03066 0.90834 1.03497 1.19851 0.87914 0.90106 0.91089 1.20815 1.01595 0.97321 1.00206 1.19985 0.93541 0.89947 0.95184 1.21822 1.01670 0.92125 0.99108 1.23931 0.98300 0.84757 0.95540 1.86845 1.43980 1.14907 1.75708 1.22064 1.01807 0.92928 0.85418 1.21344 0.92059 0.91820 0.94415 0.92728 0.95130 0.90495 0.90286 0.90231 0.83353 0.84433 0.84094 0.88439 0.88825 0.89953 0.87179 0.90568 0.89971 0.90729 0.95729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.53 13.97 55.49 0.78 -24.75 16 2 C 0.04 1.10 4.80 -17.43 -0.08 1.02 16 3 Si 0.83 20.24 26.47 -169.99 -4.50 15.75 16 4 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -5.91 4.99 56.52 0.28 -5.63 16 7 C -0.27 -7.18 9.84 -15.06 -0.15 -7.32 16 8 H 0.08 2.30 8.05 -52.49 -0.42 1.88 16 9 N -0.60 -13.19 2.71 -171.76 -0.47 -13.66 16 10 C 0.13 2.65 4.58 -3.36 -0.02 2.63 16 11 C 0.10 1.72 6.56 -3.36 -0.02 1.70 16 12 N -0.99 -15.72 3.26 -113.00 -0.37 -16.09 16 13 S 2.69 40.93 5.70 -107.50 -0.61 40.32 16 14 O -0.96 -16.26 15.99 -57.17 -0.91 -17.18 16 15 O -0.96 -15.78 15.98 -57.17 -0.91 -16.69 16 16 C -0.70 -9.75 5.98 -39.52 -0.24 -9.98 16 17 C 0.02 0.23 9.50 -39.67 -0.38 -0.15 16 18 C -0.16 -1.91 10.06 -39.30 -0.40 -2.30 16 19 C 0.16 2.00 7.04 -38.96 -0.27 1.72 16 20 C -0.20 -2.45 6.27 -104.10 -0.65 -3.10 16 21 C 0.03 0.44 9.51 -39.72 -0.38 0.06 16 22 C -0.11 -0.97 7.12 -26.52 -0.19 -1.16 16 23 C 0.05 0.41 8.01 38.06 0.30 0.71 16 24 O -0.30 -3.52 11.10 -20.17 -0.22 -3.74 16 25 C 0.10 1.62 6.54 -3.60 -0.02 1.60 16 26 C 0.13 2.36 6.67 -3.60 -0.02 2.34 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.03 0.62 6.78 -51.93 -0.35 0.26 16 29 H 0.08 1.68 5.60 -51.93 -0.29 1.39 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.18 7.09 -51.93 -0.37 0.82 16 32 H 0.15 1.58 7.61 -52.49 -0.40 1.18 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.14 1.70 7.63 -52.49 -0.40 1.30 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.08 7.10 -51.93 -0.37 0.71 16 41 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -33.38 348.03 -10.14 -43.53 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.65 Total: -0.47 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.51 Total: -12.25 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.06 Total: -54.50 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -2.05 Total: -37.61 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.50 Total: 15.75 kcal Atomic # 16 Polarization: 40.93 SS G_CDS: -0.61 Total: 40.32 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.38 -10.14 -43.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129748235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.990 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds