Wall clock time and date at job start Tue Mar 31 2020 21:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 S 1.65606 * 120.59169 * 124.62091 * 12 11 10 14 14 O 1.42103 * 106.40153 * 23.56797 * 13 12 11 15 15 O 1.42098 * 106.39758 * 156.48485 * 13 12 11 16 16 C 1.76192 * 107.21728 * 270.02386 * 13 12 11 17 17 C 1.38290 * 120.11714 * 269.72320 * 16 13 12 18 18 C 1.37931 * 120.35073 * 179.97438 * 17 16 13 19 19 C 1.39287 * 120.23952 * 0.54260 * 18 17 16 20 20 C 1.38875 * 118.87713 * 359.41709 * 19 18 17 21 21 C 1.37748 * 120.78840 * 0.42171 * 20 19 18 22 22 C 1.51650 * 107.04001 * 180.67762 * 20 19 18 23 23 C 1.54706 * 101.91822 * 15.47615 * 22 20 19 24 24 O 1.36136 * 129.88079 * 179.10324 * 19 18 17 25 25 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 26 26 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 27 27 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 29 29 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 30 30 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 31 31 H 1.09001 * 109.53173 * 169.30201 * 11 10 9 32 32 H 1.07998 * 119.82284 * 0.17392 * 17 16 13 33 33 H 1.08002 * 119.87971 * 180.27919 * 18 17 16 34 34 H 1.07992 * 120.01122 * 179.80886 * 21 20 19 35 35 H 1.09000 * 110.93885 * 133.63310 * 22 20 19 36 36 H 1.08997 * 110.93851 * 257.28676 * 22 20 19 37 37 H 1.08998 * 110.74938 * 93.01760 * 23 22 20 38 38 H 1.08998 * 110.75048 * 216.18684 * 23 22 20 39 39 H 1.09004 * 109.60829 * 295.48016 * 25 12 11 40 40 H 1.08993 * 109.75563 * 175.05475 * 25 12 11 41 41 H 1.09001 * 109.60662 * 354.94142 * 26 9 7 42 42 H 1.08998 * 109.61756 * 115.28412 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 16 6.1380 -2.5191 3.5672 14 8 5.8510 -2.0420 4.8747 15 8 6.6360 -3.8245 3.3082 16 6 7.3030 -1.3950 2.8719 17 6 8.1415 -1.8071 1.8523 18 6 9.0549 -0.9310 1.3040 19 6 9.1484 0.3743 1.7809 20 6 8.3004 0.7768 2.8044 21 6 7.3865 -0.0988 3.3482 22 6 8.6168 2.2306 3.0979 23 6 9.4337 2.6382 1.8489 24 8 9.9780 1.3849 1.4017 25 6 4.5005 -3.2084 1.5123 26 6 4.1992 -2.2929 0.3191 27 1 -0.4850 0.8400 -0.0004 28 1 4.2586 0.1714 1.7186 29 1 2.5201 0.1137 2.1099 30 1 2.7995 -1.9334 3.3902 31 1 4.0699 -0.8067 3.9339 32 1 8.0785 -2.8194 1.4812 33 1 9.7030 -1.2596 0.5050 34 1 6.7353 0.2266 4.1459 35 1 7.7032 2.8201 3.1754 36 1 9.2162 2.3236 4.0035 37 1 8.7848 3.0711 1.0876 38 1 10.2287 3.3338 2.1176 39 1 3.6505 -3.8667 1.6921 40 1 5.3872 -3.8056 1.3004 41 1 3.8352 -2.8898 -0.5171 42 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129748235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:42 Heat of formation + Delta-G solvation = -54.869986 kcal Electronic energy + Delta-G solvation = -28325.952332 eV Core-core repulsion = 24399.008893 eV Total energy + Delta-G solvation = -3926.943439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23300 -39.36805 -38.63283 -38.43049 -36.99219 -35.60555 -33.83144 -33.33410 -32.13491 -31.53360 -30.34563 -28.32359 -25.06014 -24.94693 -24.57133 -23.79485 -22.98338 -21.83460 -20.05696 -19.22405 -18.67827 -18.49899 -17.99679 -17.81277 -17.20958 -16.90804 -16.72760 -15.95444 -15.58364 -15.46234 -15.30911 -15.15493 -14.98296 -14.60848 -14.37243 -14.23764 -14.13354 -14.11761 -13.81549 -13.63319 -13.25988 -13.23942 -13.06089 -12.79900 -12.74061 -12.48244 -12.23660 -12.17505 -12.10163 -12.04622 -11.97153 -11.53087 -11.39288 -10.70845 -10.16803 -10.11050 -9.58135 -8.85584 -8.20598 -5.34165 -0.70769 -0.27771 0.13019 1.35916 1.47194 1.53116 1.82416 2.05001 2.38008 2.47271 2.72070 2.95446 3.09314 3.38645 3.45183 3.53315 3.73866 3.76844 4.04522 4.06495 4.09005 4.21045 4.31432 4.43643 4.48365 4.52076 4.54369 4.63483 4.72773 4.74536 4.78183 4.83542 4.90309 4.93855 4.95750 5.09795 5.10175 5.12254 5.34619 5.38831 5.59377 5.89215 5.93270 6.15750 6.94881 7.67942 8.11220 8.97526 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.005196 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.140049 B = 5387.726401 C = 6948.519863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.012 4.012 3 Si 0.893 3.107 4 H -0.305 1.305 5 H -0.297 1.297 6 H -0.234 1.234 7 C -0.259 4.259 8 H 0.053 0.947 9 N -0.609 5.609 10 C 0.127 3.873 11 C 0.108 3.892 12 N -0.989 5.989 13 S 2.710 3.290 14 O -0.981 6.981 15 O -0.974 6.974 16 C -0.710 4.710 17 C 0.011 3.989 18 C -0.164 4.164 19 C 0.146 3.854 20 C -0.207 4.207 21 C 0.016 3.984 22 C -0.110 4.110 23 C 0.044 3.956 24 O -0.313 6.313 25 C 0.108 3.892 26 C 0.127 3.873 27 H 0.261 0.739 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.141 0.859 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.761 2.513 6.145 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.210 4.210 3 Si 0.720 3.280 4 H -0.234 1.234 5 H -0.224 1.224 6 H -0.157 1.157 7 C -0.388 4.388 8 H 0.070 0.930 9 N -0.333 5.333 10 C 0.000 4.000 11 C -0.018 4.018 12 N -0.827 5.827 13 S 2.804 3.196 14 O -0.971 6.971 15 O -0.965 6.965 16 C -0.799 4.799 17 C -0.008 4.008 18 C -0.183 4.183 19 C 0.099 3.901 20 C -0.209 4.209 21 C -0.003 4.003 22 C -0.146 4.146 23 C -0.030 4.030 24 O -0.226 6.226 25 C -0.018 4.018 26 C 0.001 3.999 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.159 0.841 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 20.961 2.023 6.726 22.107 hybrid contribution -0.183 1.606 -0.819 1.812 sum 20.778 3.629 5.907 21.904 Atomic orbital electron populations 1.70211 1.07751 1.27376 1.51764 1.25674 0.95153 1.00230 0.99933 0.86658 0.81982 0.82276 0.77056 1.23422 1.22417 1.15715 1.18726 0.97521 0.95689 1.26867 0.92972 1.44310 1.17966 1.43591 1.27469 1.21820 0.98879 0.92625 0.86685 1.22081 0.91459 0.91006 0.97294 1.57425 1.32187 1.50160 1.42924 1.01228 0.72161 0.73356 0.72900 1.93520 1.84524 1.82507 1.36569 1.93525 1.80229 1.36875 1.85845 1.30804 1.21363 1.12438 1.15302 1.20899 0.89875 0.99969 0.90093 1.20646 1.03100 0.90732 1.03861 1.20145 0.88036 0.90668 0.91264 1.21201 1.00911 0.98955 0.99848 1.20178 0.94318 0.90063 0.95751 1.21961 1.02581 0.90049 1.00056 1.24242 0.99449 0.83900 0.95361 1.86834 1.44156 1.15777 1.75858 1.22022 1.03115 0.92386 0.84284 1.21522 0.91315 0.91415 0.95650 0.92978 0.94239 0.92445 0.90990 0.87888 0.81751 0.82387 0.83406 0.87281 0.87215 0.89496 0.84133 0.90983 0.87022 0.90674 0.94247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 13.97 21.65 0.30 -55.26 16 2 C -0.01 -0.67 4.80 84.86 0.41 -0.26 16 3 Si 0.89 42.24 26.47 68.60 1.82 44.06 16 4 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.23 -10.00 4.99 99.48 0.50 -9.50 16 7 C -0.26 -13.77 9.84 84.04 0.83 -12.95 16 8 H 0.05 3.03 8.05 -2.91 -0.02 3.00 16 9 N -0.61 -26.50 2.71 -697.32 -1.89 -28.38 16 10 C 0.13 4.95 4.58 86.56 0.40 5.35 16 11 C 0.11 3.52 6.56 86.56 0.57 4.09 16 12 N -0.99 -29.60 3.26 -511.42 -1.67 -31.27 16 13 S 2.71 76.94 5.70 -56.49 -0.32 76.62 16 14 O -0.98 -31.49 15.99 -128.00 -2.05 -33.53 16 15 O -0.97 -29.90 15.98 -128.00 -2.05 -31.94 16 16 C -0.71 -18.17 5.98 22.31 0.13 -18.04 16 17 C 0.01 0.25 9.50 22.21 0.21 0.46 16 18 C -0.16 -3.55 10.06 22.45 0.23 -3.33 16 19 C 0.15 3.35 7.04 22.67 0.16 3.51 16 20 C -0.21 -4.61 6.27 -19.52 -0.12 -4.73 16 21 C 0.02 0.40 9.51 22.18 0.21 0.61 16 22 C -0.11 -1.59 7.12 30.73 0.22 -1.38 16 23 C 0.04 0.59 8.01 72.56 0.58 1.17 16 24 O -0.31 -6.47 11.10 -95.10 -1.06 -7.52 16 25 C 0.11 3.15 6.54 86.42 0.57 3.72 16 26 C 0.13 4.38 6.67 86.42 0.58 4.95 16 27 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 28 H 0.04 1.48 6.78 -2.39 -0.02 1.47 16 29 H 0.06 2.47 5.60 -2.39 -0.01 2.45 16 30 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.10 2.86 7.09 -2.39 -0.02 2.84 16 32 H 0.17 3.06 7.61 -2.91 -0.02 3.03 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.15 3.27 7.63 -2.91 -0.02 3.24 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.11 2.61 7.10 -2.39 -0.02 2.59 16 41 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -71.86 348.03 -1.12 -72.97 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.83 Total: 11.09 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 4.96 Total: -16.83 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -3.25 Total: -114.92 kcal Atomic # 8 Polarization: -67.85 SS G_CDS: -5.15 Total: -73.00 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.82 Total: 44.06 kcal Atomic # 16 Polarization: 76.94 SS G_CDS: -0.32 Total: 76.62 kcal Total: -71.86 -1.12 -72.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129748235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.105 kcal (2) G-P(sol) polarization free energy of solvation -71.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds