Wall clock time and date at job start Tue Mar 31 2020 20:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17411 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 S 1.81397 * 109.47215 * 46.24234 * 3 2 1 5 5 C 1.81401 * 103.00206 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47306 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.46952 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99776 * 180.02562 * 7 6 5 9 9 O 1.21590 * 120.00076 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99722 * 180.27420 * 8 7 6 11 11 C 1.40138 * 119.99570 * 175.34926 * 10 8 7 12 12 C 1.38688 * 120.07782 * 34.59589 * 11 10 8 13 13 C 1.38202 * 120.02144 * 179.72544 * 12 11 10 14 14 C 1.38546 * 120.17207 * 0.54536 * 13 12 11 15 15 F 1.35099 * 119.92477 * 179.74738 * 14 13 12 16 16 C 1.38346 * 120.15183 * 359.72977 * 14 13 12 17 17 C 1.38736 * 119.97414 * 359.97438 * 16 14 13 18 18 O 1.35781 * 120.08098 * 180.02562 * 17 16 14 19 19 C 1.34802 * 117.00286 * 5.43152 * 18 17 16 20 20 H 1.07992 * 120.00206 * 354.95879 * 19 18 17 21 21 C 1.38640 * 119.99776 * 174.95278 * 19 18 17 22 22 N 1.31568 * 120.00141 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47163 * 60.00577 * 23 21 19 25 25 H 1.48499 * 109.47208 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47406 * 300.00097 * 23 21 19 27 27 H 4.62823 * 6.06241 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.46878 * 286.24585 * 3 2 1 29 29 H 1.09000 * 109.47174 * 166.24450 * 3 2 1 30 30 H 1.09001 * 109.47079 * 60.00136 * 5 4 3 31 31 H 1.09004 * 109.46588 * 300.00359 * 5 4 3 32 32 H 1.09003 * 109.46828 * 59.99616 * 6 5 4 33 33 H 1.09002 * 109.46840 * 299.99882 * 6 5 4 34 34 H 0.96997 * 120.00207 * 359.97438 * 7 6 5 35 35 H 0.96996 * 120.00371 * 355.34497 * 10 8 7 36 36 H 1.08000 * 119.99077 * 359.97261 * 12 11 10 37 37 H 1.07999 * 119.91710 * 180.25215 * 13 12 11 38 38 H 1.08000 * 120.00768 * 180.02562 * 16 14 13 39 39 H 0.96998 * 120.00219 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2513 -1.1819 -1.2352 5 6 5.0537 -1.0403 -1.0871 6 6 5.7235 -1.9911 -2.0812 7 7 7.1790 -1.8771 -1.9610 8 6 7.9805 -2.6258 -2.7443 9 8 7.4955 -3.3961 -3.5504 10 7 9.3196 -2.5250 -2.6299 11 6 10.1521 -3.3721 -3.3738 12 6 9.7795 -3.7676 -4.6498 13 6 10.6040 -4.5985 -5.3845 14 6 11.7987 -5.0477 -4.8456 15 9 12.5985 -5.8639 -5.5664 16 6 12.1747 -4.6622 -3.5713 17 6 11.3546 -3.8234 -2.8306 18 8 11.7218 -3.4432 -1.5799 19 6 12.9449 -3.8229 -1.1591 20 1 13.5508 -4.4707 -1.7750 21 6 13.4249 -3.3816 0.0644 22 7 12.6865 -2.5926 0.8150 23 14 15.1201 -3.9071 0.6472 24 1 16.1428 -3.4473 -0.3264 25 1 15.3953 -3.3049 1.9764 26 1 15.1696 -5.3873 0.7552 27 1 -1.0497 0.0000 -0.0004 28 1 3.0095 -0.2867 0.9866 29 1 3.0090 0.9990 -0.2444 30 1 5.3565 -1.3018 -0.0731 31 1 5.3566 -0.0159 -1.3040 32 1 5.4205 -1.7292 -3.0950 33 1 5.4205 -3.0155 -1.8646 34 1 7.5660 -1.2623 -1.3182 35 1 9.7072 -1.8661 -2.0328 36 1 8.8466 -3.4231 -5.0709 37 1 10.3141 -4.9021 -6.3796 38 1 13.1067 -5.0135 -3.1537 39 1 13.0222 -2.2841 1.6711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135282904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:08 Heat of formation + Delta-G solvation = -16.540084 kcal Electronic energy + Delta-G solvation = -25009.067249 eV Core-core repulsion = 20960.325614 eV Total energy + Delta-G solvation = -4048.741635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.24250 -40.26415 -38.81886 -36.54431 -35.29014 -34.43949 -34.05817 -32.42391 -30.88744 -29.37877 -29.02303 -27.98447 -25.51649 -23.70162 -22.33141 -21.62682 -20.59618 -18.91323 -18.36553 -18.27855 -17.65573 -16.84553 -16.45407 -16.00846 -15.54424 -15.33123 -15.22959 -15.00339 -14.87188 -14.77627 -14.36177 -14.31002 -14.04565 -13.61688 -13.59717 -13.37301 -13.16135 -12.45091 -12.41159 -12.15317 -12.02857 -11.67472 -11.35182 -11.04290 -10.94745 -10.78429 -10.74458 -10.58445 -10.25194 -9.91197 -9.77968 -9.47168 -9.07698 -8.97153 -8.08486 -7.87397 -7.11115 -6.62163 -4.19847 0.79164 1.85317 1.99102 2.12990 2.36004 2.74093 2.96956 3.06439 3.06809 3.09209 3.43243 3.80379 3.83832 4.35137 4.40235 4.47540 4.55799 4.69800 4.85039 4.86109 4.94621 5.06248 5.12128 5.45516 5.56089 5.57744 5.67804 5.75084 6.03567 6.19737 6.41010 6.59369 6.68058 6.91051 6.93267 7.06641 7.11117 7.11814 7.27330 7.66350 7.82295 8.21547 8.80157 8.84614 9.45679 10.54915 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.002335 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.544487 B =11989.080797 C =14277.223215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.184 4.184 3 C 0.019 3.981 4 S -0.216 6.216 5 C -0.110 4.110 6 C 0.159 3.841 7 N -0.745 5.745 8 C 0.706 3.294 9 O -0.583 6.583 10 N -0.663 5.663 11 C 0.077 3.923 12 C -0.050 4.050 13 C -0.228 4.228 14 C 0.128 3.872 15 F -0.152 7.152 16 C -0.258 4.258 17 C 0.157 3.843 18 O -0.168 6.168 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.043 3.957 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.224 0.776 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.399 0.601 35 H 0.411 0.589 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.014 7.023 -0.800 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.185 4.185 3 C -0.128 4.128 4 S 0.013 5.987 5 C -0.258 4.258 6 C 0.033 3.967 7 N -0.403 5.403 8 C 0.407 3.593 9 O -0.461 6.461 10 N -0.310 5.310 11 C -0.018 4.018 12 C -0.070 4.070 13 C -0.248 4.248 14 C 0.109 3.891 15 F -0.130 7.130 16 C -0.279 4.279 17 C 0.101 3.899 18 O -0.071 6.071 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.162 4.162 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.194 1.194 27 H 0.241 0.759 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.233 0.767 35 H 0.247 0.753 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.076 5.898 -1.785 17.216 hybrid contribution 1.979 0.933 1.735 2.792 sum -14.097 6.831 -0.050 15.665 Atomic orbital electron populations 1.24921 0.95783 0.99083 0.99016 1.21750 0.93019 1.01861 1.01886 1.20147 0.88989 1.01956 1.01661 1.87285 1.03650 1.55918 1.51868 1.23620 0.94230 1.03973 1.04013 1.20680 0.78338 0.99150 0.98503 1.44968 1.05705 1.46687 1.42925 1.15811 0.81158 0.80853 0.81523 1.90889 1.74546 1.41108 1.39521 1.42154 1.03430 1.38583 1.46817 1.16638 0.91704 1.01612 0.91867 1.20681 0.99000 0.96468 0.90883 1.20495 0.95609 1.06892 1.01833 1.17462 0.89525 0.92120 0.90038 1.91410 1.73232 1.70724 1.77670 1.20842 1.04479 1.07603 0.94988 1.18816 0.92608 0.92508 0.85948 1.83929 1.34157 1.66633 1.22411 1.21304 0.90853 1.30719 1.03935 0.88878 1.25271 0.99844 0.95904 0.95161 1.69993 1.36967 1.30998 1.11610 0.85753 0.80134 0.79162 0.78322 1.19343 1.20221 1.19368 0.75939 0.87547 0.87600 0.88797 0.88936 0.90542 0.90502 0.76697 0.75300 0.83923 0.85920 0.83967 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 19.25 29.55 0.57 -0.62 16 2 C -0.18 -1.55 13.35 -37.12 -0.50 -2.05 16 3 C 0.02 0.14 6.42 34.37 0.22 0.36 16 4 S -0.22 -1.98 21.69 -107.50 -2.33 -4.31 16 5 C -0.11 -0.86 6.05 37.16 0.22 -0.64 16 6 C 0.16 1.74 5.68 -4.04 -0.02 1.72 16 7 N -0.75 -9.28 5.56 -65.22 -0.36 -9.64 16 8 C 0.71 12.04 8.41 -86.92 -0.73 11.31 16 9 O -0.58 -11.63 13.76 5.29 0.07 -11.56 16 10 N -0.66 -11.98 5.20 -14.07 -0.07 -12.05 16 11 C 0.08 1.58 6.33 -83.44 -0.53 1.06 16 12 C -0.05 -0.96 8.70 -39.43 -0.34 -1.30 16 13 C -0.23 -4.25 10.02 -39.48 -0.40 -4.65 16 14 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 15 F -0.15 -2.90 17.26 2.25 0.04 -2.86 16 16 C -0.26 -5.62 9.14 -39.36 -0.36 -5.98 16 17 C 0.16 3.60 6.66 -38.94 -0.26 3.34 16 18 O -0.17 -4.34 9.32 0.03 0.00 -4.34 16 19 C -0.39 -10.23 9.49 30.88 0.29 -9.94 16 20 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -23.15 13.67 55.48 0.76 -22.39 16 23 Si 0.94 19.50 29.55 -169.99 -5.02 14.48 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 27 H 0.22 0.76 7.80 -54.10 -0.42 0.34 16 28 H 0.11 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.11 0.58 8.14 -51.92 -0.42 0.15 16 30 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 3.97 8.49 -40.82 -0.35 3.63 16 35 H 0.41 6.97 8.59 -40.82 -0.35 6.62 16 36 H 0.14 2.69 6.19 -52.49 -0.32 2.36 16 37 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 38 H 0.14 3.08 5.64 -52.49 -0.30 2.79 16 39 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -31.38 366.75 -7.71 -39.10 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -4.11 Total: 12.17 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.21 Total: -4.10 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.32 Total: -44.09 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.07 Total: -15.90 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.33 Total: -4.31 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.38 -7.71 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135282904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.555 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds