Wall clock time and date at job start Tue Mar 31 2020 20:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17411 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 S 1.81397 * 109.47215 * 46.24234 * 3 2 1 5 5 C 1.81401 * 103.00206 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47306 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.46952 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99776 * 180.02562 * 7 6 5 9 9 O 1.21590 * 120.00076 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99722 * 180.27420 * 8 7 6 11 11 C 1.40138 * 119.99570 * 175.34926 * 10 8 7 12 12 C 1.38688 * 120.07782 * 34.59589 * 11 10 8 13 13 C 1.38202 * 120.02144 * 179.72544 * 12 11 10 14 14 C 1.38546 * 120.17207 * 0.54536 * 13 12 11 15 15 F 1.35099 * 119.92477 * 179.74738 * 14 13 12 16 16 C 1.38346 * 120.15183 * 359.72977 * 14 13 12 17 17 C 1.38736 * 119.97414 * 359.97438 * 16 14 13 18 18 O 1.35781 * 120.08098 * 180.02562 * 17 16 14 19 19 C 1.34802 * 117.00286 * 5.43152 * 18 17 16 20 20 H 1.07992 * 120.00206 * 354.95879 * 19 18 17 21 21 C 1.38640 * 119.99776 * 174.95278 * 19 18 17 22 22 N 1.31568 * 120.00141 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47163 * 60.00577 * 23 21 19 25 25 H 1.48499 * 109.47208 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47406 * 300.00097 * 23 21 19 27 27 H 4.62823 * 6.06241 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.46878 * 286.24585 * 3 2 1 29 29 H 1.09000 * 109.47174 * 166.24450 * 3 2 1 30 30 H 1.09001 * 109.47079 * 60.00136 * 5 4 3 31 31 H 1.09004 * 109.46588 * 300.00359 * 5 4 3 32 32 H 1.09003 * 109.46828 * 59.99616 * 6 5 4 33 33 H 1.09002 * 109.46840 * 299.99882 * 6 5 4 34 34 H 0.96997 * 120.00207 * 359.97438 * 7 6 5 35 35 H 0.96996 * 120.00371 * 355.34497 * 10 8 7 36 36 H 1.08000 * 119.99077 * 359.97261 * 12 11 10 37 37 H 1.07999 * 119.91710 * 180.25215 * 13 12 11 38 38 H 1.08000 * 120.00768 * 180.02562 * 16 14 13 39 39 H 0.96998 * 120.00219 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2513 -1.1819 -1.2352 5 6 5.0537 -1.0403 -1.0871 6 6 5.7235 -1.9911 -2.0812 7 7 7.1790 -1.8771 -1.9610 8 6 7.9805 -2.6258 -2.7443 9 8 7.4955 -3.3961 -3.5504 10 7 9.3196 -2.5250 -2.6299 11 6 10.1521 -3.3721 -3.3738 12 6 9.7795 -3.7676 -4.6498 13 6 10.6040 -4.5985 -5.3845 14 6 11.7987 -5.0477 -4.8456 15 9 12.5985 -5.8639 -5.5664 16 6 12.1747 -4.6622 -3.5713 17 6 11.3546 -3.8234 -2.8306 18 8 11.7218 -3.4432 -1.5799 19 6 12.9449 -3.8229 -1.1591 20 1 13.5508 -4.4707 -1.7750 21 6 13.4249 -3.3816 0.0644 22 7 12.6865 -2.5926 0.8150 23 14 15.1201 -3.9071 0.6472 24 1 16.1428 -3.4473 -0.3264 25 1 15.3953 -3.3049 1.9764 26 1 15.1696 -5.3873 0.7552 27 1 -1.0497 0.0000 -0.0004 28 1 3.0095 -0.2867 0.9866 29 1 3.0090 0.9990 -0.2444 30 1 5.3565 -1.3018 -0.0731 31 1 5.3566 -0.0159 -1.3040 32 1 5.4205 -1.7292 -3.0950 33 1 5.4205 -3.0155 -1.8646 34 1 7.5660 -1.2623 -1.3182 35 1 9.7072 -1.8661 -2.0328 36 1 8.8466 -3.4231 -5.0709 37 1 10.3141 -4.9021 -6.3796 38 1 13.1067 -5.0135 -3.1537 39 1 13.0222 -2.2841 1.6711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135282904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:07 Heat of formation + Delta-G solvation = -35.683351 kcal Electronic energy + Delta-G solvation = -25009.897363 eV Core-core repulsion = 20960.325614 eV Total energy + Delta-G solvation = -4049.571749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.81658 -41.74342 -40.42105 -38.17219 -36.47460 -35.56381 -34.96885 -34.29937 -31.93890 -31.01127 -29.69449 -29.37400 -27.37524 -24.80282 -23.84145 -23.12954 -21.99470 -20.14675 -19.82572 -19.46984 -19.08751 -18.33200 -17.23330 -17.18561 -16.97979 -16.71689 -16.57399 -16.55262 -15.98401 -15.84964 -15.51018 -15.36726 -15.32306 -15.21554 -15.05475 -14.87350 -14.11501 -14.02312 -13.76423 -13.43332 -13.23311 -13.08484 -12.87407 -12.54819 -12.34774 -12.16980 -11.69805 -11.63933 -11.33814 -11.33015 -11.02559 -10.85887 -10.81133 -10.23188 -9.53606 -8.78395 -8.74098 -8.50258 -6.16011 0.12908 0.23574 0.47850 1.31367 1.38064 1.46074 1.51238 1.71854 1.80828 2.03466 2.15168 2.21338 2.69202 3.06476 3.16950 3.23424 3.33515 3.46727 3.62376 3.88374 3.96136 4.17864 4.23181 4.36492 4.37916 4.38439 4.59534 4.69557 4.79769 4.95679 5.01397 5.03262 5.23456 5.28105 5.32654 5.39436 5.56761 5.89160 5.94769 6.08404 6.57638 6.92247 6.94478 7.43399 7.63737 8.69834 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.002335 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.544487 B =11989.080797 C =14277.223215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.226 4.226 3 C 0.030 3.970 4 S -0.265 6.265 5 C -0.091 4.091 6 C 0.160 3.840 7 N -0.726 5.726 8 C 0.704 3.296 9 O -0.612 6.612 10 N -0.664 5.664 11 C 0.078 3.922 12 C -0.051 4.051 13 C -0.204 4.204 14 C 0.122 3.878 15 F -0.145 7.145 16 C -0.264 4.264 17 C 0.131 3.869 18 O -0.200 6.200 19 C -0.416 4.416 20 H 0.099 0.901 21 C -0.008 4.008 22 N -0.904 5.904 23 Si 1.010 2.990 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.263 1.263 27 H 0.252 0.748 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.413 0.587 35 H 0.415 0.585 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.137 0.863 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.579 7.438 -1.181 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.227 4.227 3 C -0.117 4.117 4 S -0.037 6.037 5 C -0.240 4.240 6 C 0.035 3.965 7 N -0.384 5.384 8 C 0.404 3.596 9 O -0.493 6.493 10 N -0.311 5.311 11 C -0.017 4.017 12 C -0.072 4.072 13 C -0.224 4.224 14 C 0.102 3.898 15 F -0.124 7.124 16 C -0.285 4.285 17 C 0.078 3.922 18 O -0.106 6.106 19 C -0.492 4.492 20 H 0.116 0.884 21 C -0.208 4.208 22 N -0.541 5.541 23 Si 0.830 3.170 24 H -0.184 1.184 25 H -0.195 1.195 26 H -0.188 1.188 27 H 0.269 0.731 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.250 0.750 35 H 0.251 0.749 36 H 0.171 0.829 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.671 6.335 -2.175 17.967 hybrid contribution 1.930 0.791 1.663 2.668 sum -14.741 7.126 -0.511 16.381 Atomic orbital electron populations 1.25789 0.96763 0.97730 0.97632 1.22321 0.94050 1.03148 1.03185 1.20203 0.88506 1.01788 1.01155 1.87447 1.05106 1.57565 1.53550 1.23470 0.92737 1.04182 1.03577 1.20713 0.77230 0.99242 0.99304 1.44848 1.06046 1.45593 1.41868 1.15942 0.80882 0.81027 0.81703 1.90857 1.74893 1.42542 1.40973 1.42157 1.03796 1.38364 1.46782 1.16880 0.91244 1.01181 0.92425 1.20872 0.99403 0.96534 0.90372 1.20882 0.94129 1.04586 1.02802 1.17456 0.90184 0.92561 0.89572 1.91427 1.73147 1.70480 1.77299 1.20926 1.04279 1.07460 0.95837 1.19154 0.93841 0.93442 0.85809 1.83906 1.34441 1.68295 1.23913 1.21699 0.91454 1.31407 1.04652 0.88413 1.26347 1.03654 0.95810 0.94971 1.70098 1.38958 1.32772 1.12246 0.84760 0.75321 0.78915 0.78038 1.18417 1.19459 1.18758 0.73128 0.86269 0.85942 0.87567 0.86818 0.91103 0.92121 0.74994 0.74854 0.82947 0.82520 0.84571 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 19.25 74.32 1.43 -0.57 16 2 C -0.23 -3.56 13.35 31.12 0.42 -3.14 16 3 C 0.03 0.38 6.42 70.18 0.45 0.83 16 4 S -0.26 -4.67 21.69 -56.49 -1.23 -5.90 16 5 C -0.09 -1.29 6.05 71.98 0.44 -0.85 16 6 C 0.16 3.38 5.68 86.38 0.49 3.88 16 7 N -0.73 -17.40 5.56 -478.53 -2.66 -20.06 16 8 C 0.70 23.67 8.41 179.06 1.51 25.18 16 9 O -0.61 -24.13 13.76 -4.00 -0.06 -24.19 16 10 N -0.66 -24.00 5.20 -316.71 -1.65 -25.64 16 11 C 0.08 3.23 6.33 38.21 0.24 3.47 16 12 C -0.05 -1.91 8.70 22.37 0.19 -1.71 16 13 C -0.20 -7.12 10.02 22.33 0.22 -6.90 16 14 C 0.12 4.72 7.29 22.37 0.16 4.88 16 15 F -0.14 -5.28 17.26 44.97 0.78 -4.51 16 16 C -0.26 -11.55 9.14 22.41 0.20 -11.34 16 17 C 0.13 6.12 6.66 22.68 0.15 6.27 16 18 O -0.20 -10.68 9.32 -22.80 -0.21 -10.89 16 19 C -0.42 -22.32 9.49 67.92 0.64 -21.67 16 20 H 0.10 4.93 5.20 -2.91 -0.02 4.92 16 21 C -0.01 -0.42 5.49 84.83 0.47 0.05 16 22 N -0.90 -49.79 13.67 21.61 0.30 -49.49 16 23 Si 1.01 40.15 29.55 68.60 2.03 42.18 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 25 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 26 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 27 H 0.25 1.15 7.80 -4.43 -0.03 1.11 16 28 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.41 7.66 8.49 -92.71 -0.79 6.87 16 35 H 0.41 14.25 8.59 -92.71 -0.80 13.45 16 36 H 0.15 5.47 6.19 -2.91 -0.02 5.45 16 37 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.14 6.02 5.64 -2.91 -0.02 6.00 16 39 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -69.00 366.75 3.86 -65.14 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.46 Total: 35.00 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 7.02 Total: -1.64 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -4.01 Total: -95.19 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.27 Total: -35.08 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -1.23 Total: -5.90 kcal Total: -69.00 3.86 -65.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135282904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.452 kcal (2) G-P(sol) polarization free energy of solvation -68.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds