Wall clock time and date at job start Tue Mar 31 2020 21:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.31007 * 119.99785 * 2 1 4 4 C 1.50704 * 119.99819 * 180.02562 * 3 2 1 5 5 O 1.45201 * 109.46848 * 134.99700 * 4 3 2 6 6 C 1.34710 * 116.99994 * 179.97438 * 5 4 3 7 7 O 1.21470 * 120.00077 * 0.02562 * 6 5 4 8 8 C 1.47721 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.39626 * 120.15128 * 359.72040 * 8 6 5 10 10 C 1.37944 * 119.85197 * 180.30074 * 9 8 6 11 11 C 1.38366 * 120.14814 * 359.95131 * 10 9 8 12 12 S 1.76196 * 119.84763 * 180.02562 * 11 10 9 13 13 O 1.42097 * 104.28161 * 26.09612 * 12 11 10 14 14 O 1.42097 * 104.27831 * 153.95614 * 12 11 10 15 15 C 1.81404 * 104.45086 * 270.02491 * 12 11 10 16 16 C 1.53000 * 109.47208 * 179.97438 * 15 12 11 17 17 C 1.50703 * 109.46907 * 179.97438 * 16 15 12 18 18 H 1.07993 * 120.00437 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99939 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00139 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99704 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47112 * 90.00485 * 21 19 17 23 23 H 1.48500 * 109.46863 * 209.99940 * 21 19 17 24 24 H 1.48497 * 109.47028 * 330.00021 * 21 19 17 25 25 C 1.38364 * 120.30300 * 0.05184 * 11 10 9 26 26 C 1.37940 * 120.15319 * 359.97229 * 25 11 10 27 27 H 1.08996 * 109.47294 * 60.00102 * 1 2 3 28 28 H 1.09004 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47400 * 300.00048 * 1 2 3 30 30 H 1.08003 * 120.00451 * 179.97438 * 2 1 3 31 31 H 1.07999 * 120.00244 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47042 * 15.00259 * 4 3 2 33 33 H 1.08993 * 109.47136 * 254.99711 * 4 3 2 34 34 H 1.08004 * 120.07288 * 0.25512 * 9 8 6 35 35 H 1.08005 * 119.92678 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47219 * 300.00458 * 15 12 11 37 37 H 1.08998 * 109.47167 * 59.99880 * 15 12 11 38 38 H 1.08989 * 109.47368 * 300.00067 * 16 15 12 39 39 H 1.09004 * 109.46724 * 60.00858 * 16 15 12 40 40 H 0.96997 * 120.00300 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.92502 * 179.97438 * 25 11 10 42 42 H 1.07998 * 120.07857 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 3.6690 1.1346 -0.0006 5 8 4.1525 2.1028 -0.9686 6 6 5.4880 2.2280 -1.0936 7 8 6.2282 1.5468 -0.4129 8 6 6.0522 3.1939 -2.0585 9 6 5.2042 3.9744 -2.8467 10 6 5.7378 4.8699 -3.7502 11 6 7.1099 4.9964 -3.8755 12 16 7.7829 6.1432 -5.0315 13 8 6.7732 7.1332 -5.1715 14 8 9.0595 6.4691 -4.4993 15 6 7.9571 5.1904 -6.5653 16 6 8.5388 6.0875 -7.6598 17 6 8.6841 5.2957 -8.9338 18 1 8.3905 4.2568 -8.9603 19 6 9.1918 5.8978 -10.0655 20 7 9.3181 5.2070 -11.1774 21 14 9.7002 7.6947 -10.0194 22 1 11.1288 7.7950 -9.6267 23 1 9.5130 8.2967 -11.3639 24 1 8.8629 8.4207 -9.0309 25 6 7.9560 4.2260 -3.0976 26 6 7.4359 3.3263 -2.1906 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.0470 -0.9353 0.0004 31 1 1.6219 2.0699 -0.0004 32 1 4.0322 0.1420 -0.2670 33 1 4.0327 1.4004 0.9919 34 1 4.1330 3.8767 -2.7498 35 1 5.0830 5.4740 -4.3608 36 1 8.6245 4.3457 -6.3945 37 1 6.9796 4.8235 -6.8782 38 1 7.8711 6.9318 -7.8305 39 1 9.5164 6.4546 -7.3472 40 1 9.6750 5.6306 -11.9737 41 1 9.0261 4.3294 -3.2007 42 1 8.0974 2.7253 -1.5843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154689882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:52 Heat of formation + Delta-G solvation = -117.778839 kcal Electronic energy + Delta-G solvation = -25352.995900 eV Core-core repulsion = 21391.031777 eV Total energy + Delta-G solvation = -3961.964123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99721 -39.14210 -37.17535 -36.83394 -35.67382 -35.54895 -34.02045 -32.14268 -31.54414 -31.41762 -29.92452 -26.16875 -25.71001 -24.21914 -23.08682 -21.59938 -21.12855 -20.16577 -18.94065 -18.44586 -17.84431 -17.38769 -16.86736 -16.82002 -15.93808 -15.50233 -15.36263 -14.94156 -14.85225 -14.56746 -14.35967 -13.97752 -13.88169 -13.71143 -13.64895 -13.45863 -13.04360 -12.88170 -12.81664 -12.26442 -11.96087 -11.81104 -11.78660 -11.71205 -11.51535 -11.30542 -11.29681 -11.26922 -11.12468 -10.78931 -10.48689 -10.18328 -9.86863 -9.63701 -9.59846 -9.38885 -9.36563 -8.69646 -6.19743 -4.21844 -0.07920 0.37734 0.97737 1.38368 1.99742 2.33938 3.07646 3.24523 3.25258 3.32453 3.35718 4.06196 4.09676 4.21901 4.32858 4.35079 4.47431 4.55683 4.57049 4.73154 4.82119 4.97091 4.97957 5.03929 5.12387 5.12870 5.18298 5.24798 5.42056 5.45436 5.47898 5.61999 5.64335 5.77506 5.86129 5.94667 6.05418 6.15052 6.18444 6.39787 6.74883 6.87518 7.27876 7.49569 8.32027 8.81140 9.39218 10.92419 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.002097 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.091250 B =13351.523703 C =13919.036244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.135 4.135 3 C -0.169 4.169 4 C 0.099 3.901 5 O -0.347 6.347 6 C 0.510 3.490 7 O -0.499 6.499 8 C -0.084 4.084 9 C -0.084 4.084 10 C -0.037 4.037 11 C -0.622 4.622 12 S 2.468 3.532 13 O -0.941 6.941 14 O -0.941 6.941 15 C -0.555 4.555 16 C -0.009 4.009 17 C -0.521 4.521 18 H 0.079 0.921 19 C 0.073 3.927 20 N -0.894 5.894 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.261 1.261 25 C -0.035 4.035 26 C -0.076 4.076 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.147 0.853 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.267 0.733 41 H 0.154 0.846 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 -8.177 22.503 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C -0.187 4.187 4 C 0.026 3.974 5 O -0.263 6.263 6 C 0.354 3.646 7 O -0.388 6.388 8 C -0.085 4.085 9 C -0.103 4.103 10 C -0.056 4.056 11 C -0.706 4.706 12 S 2.650 3.350 13 O -0.938 6.938 14 O -0.938 6.938 15 C -0.688 4.688 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.097 0.903 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.695 3.305 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.185 1.185 25 C -0.054 4.054 26 C -0.095 4.095 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.172 0.828 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.555 -7.552 22.794 27.574 hybrid contribution 0.069 -0.190 0.097 0.224 sum -13.486 -7.741 22.891 27.673 Atomic orbital electron populations 1.20887 0.92227 1.02845 1.02506 1.22924 0.96790 0.97702 0.97941 1.22496 0.93300 0.99412 1.03524 1.22024 0.92275 0.91469 0.91607 1.86563 1.23479 1.58207 1.58089 1.21181 0.80724 0.81338 0.81337 1.90852 1.60374 1.43778 1.43798 1.19374 0.94352 0.97397 0.97368 1.21589 1.00645 0.94025 0.94008 1.21048 0.93310 0.95138 0.96080 1.31343 1.03385 1.18042 1.17801 1.06571 0.74675 0.76349 0.77437 1.93542 1.58931 1.54790 1.86525 1.93542 1.40386 1.81981 1.77897 1.30028 1.11302 1.13242 1.14254 1.19487 0.96390 0.95112 0.93836 1.20816 1.43990 0.98957 0.92271 0.90286 1.24979 0.94740 0.98091 0.95233 1.69871 1.45107 1.36810 1.01367 0.86930 0.79967 0.85476 0.78116 1.19640 1.20753 1.18532 1.21006 1.00650 0.91508 0.92192 1.21389 0.93320 0.97381 0.97441 0.91056 0.91655 0.91298 0.87018 0.85988 0.90471 0.90033 0.83512 0.82931 0.85030 0.85010 0.94603 0.95055 0.92311 0.82815 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.53 10.17 36.00 0.37 -0.16 16 2 C -0.14 -0.73 9.86 -36.03 -0.36 -1.09 16 3 C -0.17 -1.08 9.54 -36.03 -0.34 -1.42 16 4 C 0.10 0.78 5.89 36.01 0.21 0.99 16 5 O -0.35 -3.41 9.46 -40.52 -0.38 -3.80 16 6 C 0.51 5.81 7.90 34.61 0.27 6.08 16 7 O -0.50 -6.62 16.14 -19.24 -0.31 -6.94 16 8 C -0.08 -0.94 5.87 -104.98 -0.62 -1.56 16 9 C -0.08 -0.86 9.62 -39.17 -0.38 -1.24 16 10 C -0.04 -0.43 9.45 -39.64 -0.37 -0.80 16 11 C -0.62 -8.00 5.66 -39.49 -0.22 -8.22 16 12 S 2.47 38.53 5.15 -107.50 -0.55 37.98 16 13 O -0.94 -16.80 17.11 -57.54 -0.98 -17.78 16 14 O -0.94 -16.85 17.11 -57.54 -0.98 -17.84 16 15 C -0.55 -9.27 5.92 37.16 0.22 -9.05 16 16 C -0.01 -0.20 4.05 -27.88 -0.11 -0.32 16 17 C -0.52 -14.00 9.66 -34.44 -0.33 -14.33 16 18 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 20 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 21 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 25 C -0.04 -0.41 9.45 -39.64 -0.37 -0.79 16 26 C -0.08 -0.85 9.60 -39.17 -0.38 -1.23 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.11 0.52 7.90 -52.48 -0.41 0.11 16 31 H 0.12 0.72 8.05 -52.49 -0.42 0.29 16 32 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.15 1.17 7.61 -52.48 -0.40 0.77 16 35 H 0.15 1.52 7.56 -52.48 -0.40 1.13 16 36 H 0.13 1.95 8.14 -51.92 -0.42 1.53 16 37 H 0.13 1.95 8.14 -51.92 -0.42 1.52 16 38 H 0.04 0.79 7.20 -51.94 -0.37 0.42 16 39 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.15 1.60 7.56 -52.48 -0.40 1.21 16 42 H 0.15 1.43 7.65 -52.49 -0.40 1.03 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -34.57 379.34 -9.64 -44.21 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.73 Total: -0.86 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: -2.51 Total: -31.21 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.77 Total: -25.65 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -2.66 Total: -46.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Atomic # 16 Polarization: 38.53 SS G_CDS: -0.55 Total: 37.98 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.57 -9.64 -44.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154689882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.569 kcal (2) G-P(sol) polarization free energy of solvation -34.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds