Wall clock time and date at job start Tue Mar 31 2020 21:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.31007 * 119.99785 * 2 1 4 4 C 1.50704 * 119.99819 * 180.02562 * 3 2 1 5 5 O 1.45201 * 109.46848 * 134.99700 * 4 3 2 6 6 C 1.34710 * 116.99994 * 179.97438 * 5 4 3 7 7 O 1.21470 * 120.00077 * 0.02562 * 6 5 4 8 8 C 1.47721 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.39626 * 120.15128 * 359.72040 * 8 6 5 10 10 C 1.37944 * 119.85197 * 180.30074 * 9 8 6 11 11 C 1.38366 * 120.14814 * 359.95131 * 10 9 8 12 12 S 1.76196 * 119.84763 * 180.02562 * 11 10 9 13 13 O 1.42097 * 104.28161 * 26.09612 * 12 11 10 14 14 O 1.42097 * 104.27831 * 153.95614 * 12 11 10 15 15 C 1.81404 * 104.45086 * 270.02491 * 12 11 10 16 16 C 1.53000 * 109.47208 * 179.97438 * 15 12 11 17 17 C 1.50703 * 109.46907 * 179.97438 * 16 15 12 18 18 H 1.07993 * 120.00437 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99939 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00139 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99704 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47112 * 90.00485 * 21 19 17 23 23 H 1.48500 * 109.46863 * 209.99940 * 21 19 17 24 24 H 1.48497 * 109.47028 * 330.00021 * 21 19 17 25 25 C 1.38364 * 120.30300 * 0.05184 * 11 10 9 26 26 C 1.37940 * 120.15319 * 359.97229 * 25 11 10 27 27 H 1.08996 * 109.47294 * 60.00102 * 1 2 3 28 28 H 1.09004 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47400 * 300.00048 * 1 2 3 30 30 H 1.08003 * 120.00451 * 179.97438 * 2 1 3 31 31 H 1.07999 * 120.00244 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47042 * 15.00259 * 4 3 2 33 33 H 1.08993 * 109.47136 * 254.99711 * 4 3 2 34 34 H 1.08004 * 120.07288 * 0.25512 * 9 8 6 35 35 H 1.08005 * 119.92678 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47219 * 300.00458 * 15 12 11 37 37 H 1.08998 * 109.47167 * 59.99880 * 15 12 11 38 38 H 1.08989 * 109.47368 * 300.00067 * 16 15 12 39 39 H 1.09004 * 109.46724 * 60.00858 * 16 15 12 40 40 H 0.96997 * 120.00300 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.92502 * 179.97438 * 25 11 10 42 42 H 1.07998 * 120.07857 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 3.6690 1.1346 -0.0006 5 8 4.1525 2.1028 -0.9686 6 6 5.4880 2.2280 -1.0936 7 8 6.2282 1.5468 -0.4129 8 6 6.0522 3.1939 -2.0585 9 6 5.2042 3.9744 -2.8467 10 6 5.7378 4.8699 -3.7502 11 6 7.1099 4.9964 -3.8755 12 16 7.7829 6.1432 -5.0315 13 8 6.7732 7.1332 -5.1715 14 8 9.0595 6.4691 -4.4993 15 6 7.9571 5.1904 -6.5653 16 6 8.5388 6.0875 -7.6598 17 6 8.6841 5.2957 -8.9338 18 1 8.3905 4.2568 -8.9603 19 6 9.1918 5.8978 -10.0655 20 7 9.3181 5.2070 -11.1774 21 14 9.7002 7.6947 -10.0194 22 1 11.1288 7.7950 -9.6267 23 1 9.5130 8.2967 -11.3639 24 1 8.8629 8.4207 -9.0309 25 6 7.9560 4.2260 -3.0976 26 6 7.4359 3.3263 -2.1906 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.0470 -0.9353 0.0004 31 1 1.6219 2.0699 -0.0004 32 1 4.0322 0.1420 -0.2670 33 1 4.0327 1.4004 0.9919 34 1 4.1330 3.8767 -2.7498 35 1 5.0830 5.4740 -4.3608 36 1 8.6245 4.3457 -6.3945 37 1 6.9796 4.8235 -6.8782 38 1 7.8711 6.9318 -7.8305 39 1 9.5164 6.4546 -7.3472 40 1 9.6750 5.6306 -11.9737 41 1 9.0261 4.3294 -3.2007 42 1 8.0974 2.7253 -1.5843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154689882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:51 Heat of formation + Delta-G solvation = -138.996337 kcal Electronic energy + Delta-G solvation = -25353.915960 eV Core-core repulsion = 21391.031777 eV Total energy + Delta-G solvation = -3962.884183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84292 -40.00864 -38.17136 -37.96046 -37.01610 -36.05926 -35.86423 -33.45268 -33.03538 -32.28948 -30.42979 -27.89757 -26.54610 -24.91934 -23.94130 -23.10740 -22.24293 -20.64054 -20.11821 -19.47591 -19.15706 -18.59721 -18.06133 -17.61692 -17.10574 -16.91487 -16.36429 -16.12413 -15.94709 -15.62204 -15.20425 -15.18040 -14.79942 -14.69651 -14.59367 -14.25394 -14.12450 -13.85498 -13.75534 -13.62088 -13.18544 -13.09599 -13.03343 -12.92653 -12.66171 -12.41580 -12.26002 -12.19162 -12.11350 -11.99502 -11.90552 -11.76249 -11.62435 -11.19481 -10.80719 -10.63573 -10.24694 -10.07738 -8.32789 -6.38537 -1.09215 -0.79857 0.11846 0.85821 1.10071 1.36201 1.38347 1.47833 1.64786 1.91002 2.32824 2.33235 2.86226 3.01718 3.11161 3.35220 3.61656 3.75067 3.78395 3.94010 3.97638 4.02382 4.10738 4.21364 4.27601 4.31231 4.42326 4.52795 4.61953 4.77998 4.79857 4.82258 4.83881 4.87258 5.01197 5.10768 5.12921 5.14978 5.19833 5.50918 5.53043 5.64283 5.71977 6.20016 6.44078 6.68395 7.25816 8.82581 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.002097 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.091250 B =13351.523703 C =13919.036244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C -0.182 4.182 4 C 0.095 3.905 5 O -0.345 6.345 6 C 0.514 3.486 7 O -0.522 6.522 8 C -0.089 4.089 9 C -0.075 4.075 10 C -0.042 4.042 11 C -0.625 4.625 12 S 2.497 3.503 13 O -0.963 6.963 14 O -0.965 6.965 15 C -0.563 4.563 16 C -0.021 4.021 17 C -0.526 4.526 18 H 0.051 0.949 19 C 0.012 3.988 20 N -0.941 5.941 21 Si 0.924 3.076 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.245 1.245 25 C -0.041 4.041 26 C -0.078 4.078 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.269 0.731 41 H 0.165 0.835 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.252 -7.952 24.308 29.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.147 4.147 3 C -0.200 4.200 4 C 0.022 3.978 5 O -0.261 6.261 6 C 0.359 3.641 7 O -0.413 6.413 8 C -0.090 4.090 9 C -0.094 4.094 10 C -0.060 4.060 11 C -0.712 4.712 12 S 2.682 3.318 13 O -0.961 6.961 14 O -0.963 6.963 15 C -0.694 4.694 16 C -0.060 4.060 17 C -0.565 4.565 18 H 0.069 0.931 19 C -0.186 4.186 20 N -0.581 5.581 21 Si 0.747 3.253 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.168 1.168 25 C -0.059 4.059 26 C -0.097 4.097 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.190 0.810 35 H 0.185 0.815 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.182 0.818 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.837 -7.300 24.571 29.617 hybrid contribution 0.350 -0.434 -0.351 0.659 sum -14.487 -7.735 24.220 29.263 Atomic orbital electron populations 1.20935 0.91226 1.03577 1.02869 1.23148 0.97615 0.97657 0.96251 1.22462 0.92367 1.00027 1.05181 1.22212 0.93257 0.91046 0.91241 1.86555 1.22504 1.58599 1.58491 1.21196 0.81087 0.80912 0.80913 1.90842 1.60980 1.44719 1.44741 1.19545 0.94628 0.97415 0.97383 1.21825 1.01834 0.92859 0.92848 1.21308 0.92871 0.95410 0.96450 1.30812 1.04198 1.18399 1.17817 1.05322 0.73768 0.75932 0.76784 1.93508 1.59431 1.56215 1.86902 1.93507 1.41952 1.82713 1.78080 1.30006 1.12356 1.13130 1.13942 1.19453 0.97192 0.95679 0.93663 1.21174 1.42684 0.98301 0.94325 0.93098 1.25875 0.95131 1.02605 0.94991 1.70007 1.46958 1.38856 1.02268 0.86033 0.80216 0.80367 0.78677 1.18682 1.20286 1.16819 1.21181 1.01230 0.91383 0.92140 1.21536 0.93692 0.97201 0.97275 0.90905 0.90800 0.90648 0.86448 0.85567 0.90373 0.89852 0.81023 0.81478 0.83479 0.83312 0.94343 0.94603 0.92210 0.81772 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 10.17 71.23 0.72 -0.09 16 2 C -0.13 -1.16 9.86 25.64 0.25 -0.91 16 3 C -0.18 -2.03 9.54 25.64 0.24 -1.78 16 4 C 0.10 1.36 5.89 71.24 0.42 1.78 16 5 O -0.35 -6.18 9.46 -56.20 -0.53 -6.71 16 6 C 0.51 10.86 7.90 70.33 0.56 11.41 16 7 O -0.52 -13.25 16.14 19.93 0.32 -12.93 16 8 C -0.09 -1.80 5.87 -20.10 -0.12 -1.92 16 9 C -0.07 -1.35 9.62 22.54 0.22 -1.13 16 10 C -0.04 -0.86 9.45 22.23 0.21 -0.65 16 11 C -0.62 -14.86 5.66 22.33 0.13 -14.73 16 12 S 2.50 74.34 5.15 -56.49 -0.29 74.05 16 13 O -0.96 -32.91 17.11 -127.65 -2.18 -35.10 16 14 O -0.97 -33.38 17.11 -127.65 -2.18 -35.56 16 15 C -0.56 -18.19 5.92 71.98 0.43 -17.76 16 16 C -0.02 -0.93 4.05 29.85 0.12 -0.81 16 17 C -0.53 -28.58 9.66 25.60 0.25 -28.33 16 18 H 0.05 2.96 7.99 -2.91 -0.02 2.93 16 19 C 0.01 0.70 5.47 84.66 0.46 1.16 16 20 N -0.94 -56.90 13.96 21.45 0.30 -56.60 16 21 Si 0.92 42.58 27.47 68.60 1.88 44.46 16 22 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 25 C -0.04 -0.89 9.45 22.23 0.21 -0.68 16 26 C -0.08 -1.60 9.60 22.54 0.22 -1.39 16 27 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.12 0.90 7.90 -2.91 -0.02 0.87 16 31 H 0.13 1.27 8.05 -2.91 -0.02 1.25 16 32 H 0.08 1.09 7.86 -2.39 -0.02 1.07 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.17 2.18 7.61 -2.91 -0.02 2.16 16 35 H 0.17 2.90 7.56 -2.91 -0.02 2.87 16 36 H 0.15 4.22 8.14 -2.39 -0.02 4.20 16 37 H 0.15 4.22 8.14 -2.39 -0.02 4.20 16 38 H 0.04 1.66 7.20 -2.39 -0.02 1.64 16 39 H 0.04 1.53 7.57 -2.39 -0.02 1.51 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.16 3.16 7.56 -2.91 -0.02 3.14 16 42 H 0.16 2.83 7.65 -2.91 -0.02 2.80 16 Total: -1.00 -74.03 379.34 2.59 -71.44 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.97 Total: 12.77 kcal Atomic # 6 Polarization: -60.13 SS G_CDS: 4.32 Total: -55.81 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.30 Total: -56.60 kcal Atomic # 8 Polarization: -85.72 SS G_CDS: -4.58 Total: -90.30 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.88 Total: 44.46 kcal Atomic # 16 Polarization: 74.34 SS G_CDS: -0.29 Total: 74.05 kcal Total: -74.03 2.59 -71.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154689882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.560 kcal (2) G-P(sol) polarization free energy of solvation -74.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds