Wall clock time and date at job start Tue Mar 31 2020 21:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42100 * 108.57520 * 2 1 4 4 O 1.42097 * 108.57581 * 228.97543 * 2 1 3 5 5 C 1.81403 * 101.92295 * 114.48688 * 2 1 3 6 6 C 1.50701 * 109.46949 * 179.97438 * 5 2 1 7 7 C 1.38384 * 119.92372 * 270.02433 * 6 5 2 8 8 C 1.38349 * 120.29992 * 180.02562 * 7 6 5 9 9 C 1.37963 * 120.15240 * 359.70200 * 8 7 6 10 10 C 1.39607 * 119.84399 * 0.54944 * 9 8 7 11 11 C 1.47730 * 120.14874 * 179.75150 * 10 9 8 12 12 O 1.21473 * 119.99959 * 184.76562 * 11 10 9 13 13 O 1.34707 * 120.00176 * 4.76265 * 11 10 9 14 14 C 1.45203 * 117.00193 * 185.03470 * 13 11 10 15 15 C 1.52997 * 109.47112 * 184.94089 * 14 13 11 16 16 C 1.50703 * 115.55026 * 54.24143 * 15 14 13 17 17 H 1.07995 * 120.00063 * 215.58893 * 16 15 14 18 18 C 1.37881 * 119.99978 * 35.32195 * 16 15 14 19 19 N 1.31520 * 119.99713 * 355.73352 * 18 16 15 20 20 Si 1.86798 * 120.00106 * 175.74243 * 18 16 15 21 21 H 1.48494 * 109.47129 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47287 * 119.99538 * 20 18 16 23 23 H 1.48494 * 109.46872 * 239.99232 * 20 18 16 24 24 C 1.52998 * 117.49984 * 199.91209 * 15 14 13 25 25 C 1.52998 * 117.50038 * 268.57608 * 15 14 13 26 26 C 1.37915 * 119.92075 * 90.00280 * 6 5 2 27 27 H 1.09004 * 109.47007 * 305.50705 * 1 2 3 28 28 H 1.08998 * 109.47187 * 65.51253 * 1 2 3 29 29 H 1.08999 * 109.46707 * 185.51444 * 1 2 3 30 30 H 1.09004 * 109.47003 * 60.00098 * 5 2 1 31 31 H 1.08994 * 109.47117 * 300.00403 * 5 2 1 32 32 H 1.07994 * 119.85274 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.92489 * 179.97438 * 8 7 6 34 34 H 1.08002 * 120.08074 * 180.29797 * 9 8 7 35 35 H 1.08999 * 109.46757 * 64.94101 * 14 13 11 36 36 H 1.09004 * 109.46674 * 304.94109 * 14 13 11 37 37 H 0.97001 * 119.99482 * 185.00007 * 19 18 16 38 38 H 1.08994 * 117.50197 * 215.00604 * 24 15 14 39 39 H 1.09001 * 117.49687 * 0.02666 * 24 15 14 40 40 H 1.08996 * 117.49765 * 359.96950 * 25 15 14 41 41 H 1.08996 * 117.50044 * 144.97247 * 25 15 14 42 42 H 1.07995 * 120.08271 * 0.04282 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6153 6 6 3.6828 -0.8183 1.7951 7 6 4.3667 -1.9474 1.3800 8 6 5.7381 -2.0318 1.5418 9 6 6.4340 -0.9865 2.1133 10 6 5.7496 0.1533 2.5391 11 6 6.4874 1.2742 3.1569 12 8 5.8812 2.2268 3.6048 13 8 7.8324 1.2400 3.2235 14 6 8.4846 2.3198 3.9426 15 6 10.0020 2.1793 3.8072 16 6 10.5230 2.0884 2.3960 17 1 11.3714 1.4585 2.1731 18 6 9.9130 2.8053 1.3885 19 7 8.8266 3.5019 1.6419 20 14 10.6295 2.7868 -0.3366 21 1 11.8449 1.9340 -0.3587 22 1 9.6244 2.2416 -1.2842 23 1 10.9888 4.1706 -0.7381 24 6 10.8731 2.9019 4.8367 25 6 10.7362 1.3780 4.8842 26 6 4.3653 0.2319 2.3726 27 1 -0.3633 0.5969 0.8366 28 1 -0.3633 0.4260 -0.9352 29 1 -0.3633 -1.0229 0.0988 30 1 1.7611 -1.7370 1.6665 31 1 1.7611 -0.1172 2.4042 32 1 3.8273 -2.7669 0.9285 33 1 6.2656 -2.9160 1.2161 34 1 7.5052 -1.0516 2.2347 35 1 8.2079 2.2739 4.9959 36 1 8.1695 3.2763 3.5255 37 1 8.3565 3.9470 0.9196 38 1 11.8229 3.3118 4.4933 39 1 10.3650 3.4772 5.6107 40 1 10.1382 0.9515 5.6894 41 1 11.5958 0.7850 4.5720 42 1 3.8303 1.1124 2.6964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174733401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:27 Heat of formation + Delta-G solvation = -95.508055 kcal Electronic energy + Delta-G solvation = -26930.187924 eV Core-core repulsion = 22969.189535 eV Total energy + Delta-G solvation = -3960.998389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.93434 -38.61485 -37.16245 -36.65644 -36.17759 -34.91247 -33.30595 -32.14483 -31.16126 -30.03086 -27.62831 -26.54320 -25.39918 -23.74180 -21.97957 -21.26358 -20.11826 -19.13807 -19.07689 -17.38431 -16.92159 -16.71590 -16.28491 -16.18005 -16.10210 -15.40793 -15.31267 -14.91732 -14.53531 -14.31397 -13.77039 -13.68086 -13.57044 -13.35040 -13.09308 -12.95606 -12.77167 -12.24557 -12.16270 -12.10665 -11.89209 -11.64615 -11.51201 -11.37121 -11.20400 -10.99121 -10.95203 -10.73140 -10.47746 -10.32214 -9.94495 -9.54425 -9.27794 -8.97608 -8.95274 -8.80978 -8.74420 -8.22750 -5.94973 -4.09216 -0.38740 0.90879 1.31368 2.46803 3.07360 3.30069 3.36240 3.39240 3.41757 3.55243 3.70132 3.99121 4.17504 4.31525 4.39489 4.42766 4.69158 4.89730 4.96097 5.02567 5.06425 5.25278 5.33012 5.35800 5.47555 5.56652 5.86111 5.90941 6.05814 6.21346 6.27436 6.37730 6.43726 6.51313 6.64107 6.67324 6.80505 6.84000 6.99241 7.24472 7.49557 7.62818 7.95246 8.34757 8.70181 8.89671 9.53557 10.99644 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.003199 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.607473 B = 8750.225387 C = 9351.858397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.412 3.588 3 O -0.925 6.925 4 O -0.933 6.933 5 C -0.558 4.558 6 C -0.115 4.115 7 C -0.078 4.078 8 C -0.132 4.132 9 C -0.048 4.048 10 C -0.106 4.106 11 C 0.500 3.500 12 O -0.518 6.518 13 O -0.314 6.314 14 C 0.119 3.881 15 C 0.046 3.954 16 C -0.483 4.483 17 H 0.063 0.937 18 C 0.073 3.927 19 N -0.881 5.881 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.283 1.283 24 C -0.196 4.196 25 C -0.209 4.209 26 C -0.043 4.043 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.020 0.980 36 H 0.121 0.879 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.129 -11.844 0.265 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.593 3.407 3 O -0.922 6.922 4 O -0.930 6.930 5 C -0.686 4.686 6 C -0.116 4.116 7 C -0.097 4.097 8 C -0.150 4.150 9 C -0.067 4.067 10 C -0.108 4.108 11 C 0.344 3.656 12 O -0.410 6.410 13 O -0.228 6.228 14 C 0.046 3.954 15 C 0.046 3.954 16 C -0.520 4.520 17 H 0.081 0.919 18 C -0.129 4.129 19 N -0.519 5.519 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.234 4.234 25 C -0.246 4.246 26 C -0.063 4.063 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.038 0.962 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.814 -11.052 -0.363 20.124 hybrid contribution -0.350 -0.130 -0.157 0.406 sum -17.164 -11.182 -0.520 20.492 Atomic orbital electron populations 1.30333 1.27329 1.11368 1.11860 1.08366 0.78177 0.76291 0.77823 1.93655 1.78559 1.33972 1.86008 1.93598 1.78853 1.67073 1.53496 1.29274 1.01123 1.14519 1.23635 1.18668 0.91493 0.96347 1.05105 1.21291 0.94946 0.96722 0.96749 1.21169 0.93848 0.99513 1.00475 1.21782 1.01524 0.91249 0.92108 1.19380 0.93152 0.94686 1.03546 1.20850 0.82777 0.85143 0.76810 1.90746 1.70082 1.34109 1.46022 1.86470 1.17704 1.50090 1.68538 1.22894 0.91217 0.91355 0.89959 1.18933 0.88100 0.97318 0.91077 1.20476 1.14941 1.26303 0.90250 0.91923 1.24966 0.94704 0.94229 0.99046 1.69754 1.17191 1.32904 1.32014 0.86460 0.79202 0.77857 0.84088 1.19693 1.20800 1.20893 1.22989 1.02978 0.93436 1.03993 1.22949 1.04230 0.93642 1.03821 1.21211 0.93060 0.97803 0.94193 0.85286 0.85248 0.85446 0.84062 0.83931 0.84973 0.84657 0.83356 0.96173 0.86166 0.92618 0.89800 0.91438 0.91314 0.90334 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.83 10.62 101.05 1.07 -1.75 16 2 S 2.41 22.00 5.34 -107.50 -0.57 21.42 16 3 O -0.92 -13.21 18.10 -57.83 -1.05 -14.26 16 4 O -0.93 -11.70 18.10 -57.83 -1.05 -12.75 16 5 C -0.56 -4.06 5.93 36.01 0.21 -3.85 16 6 C -0.11 -1.41 5.13 -104.69 -0.54 -1.94 16 7 C -0.08 -0.90 9.69 -39.49 -0.38 -1.28 16 8 C -0.13 -1.65 10.03 -39.64 -0.40 -2.05 16 9 C -0.05 -0.76 9.62 -39.17 -0.38 -1.13 16 10 C -0.11 -1.95 5.87 -104.98 -0.62 -2.56 16 11 C 0.50 11.27 7.88 34.61 0.27 11.54 16 12 O -0.52 -12.64 16.06 -19.25 -0.31 -12.95 16 13 O -0.31 -7.62 8.99 -40.51 -0.36 -7.99 16 14 C 0.12 2.97 4.45 37.16 0.17 3.14 16 15 C 0.05 1.15 2.21 -155.66 -0.34 0.81 16 16 C -0.48 -13.08 8.79 -34.44 -0.30 -13.38 16 17 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 18 C 0.07 2.00 5.35 -17.82 -0.10 1.91 16 19 N -0.88 -24.95 10.16 55.43 0.56 -24.39 16 20 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.20 -4.35 9.96 -26.69 -0.27 -4.61 16 25 C -0.21 -4.50 9.92 -26.69 -0.26 -4.76 16 26 C -0.04 -0.68 9.24 -39.17 -0.36 -1.05 16 27 H 0.13 0.33 8.14 -51.92 -0.42 -0.10 16 28 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.14 0.49 8.08 -51.92 -0.42 0.07 16 31 H 0.14 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.15 2.36 7.62 -52.49 -0.40 1.96 16 35 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 36 H 0.12 3.36 5.76 -51.93 -0.30 3.06 16 37 H 0.26 7.30 8.32 -40.82 -0.34 6.96 16 38 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.14 2.20 7.66 -52.49 -0.40 1.80 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -37.13 376.84 -10.05 -47.18 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.71 Total: 2.68 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -2.22 Total: -20.98 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.56 Total: -24.39 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -2.77 Total: -47.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 22.00 SS G_CDS: -0.57 Total: 21.42 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.13 -10.05 -47.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174733401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.326 kcal (2) G-P(sol) polarization free energy of solvation -37.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds