Wall clock time and date at job start Tue Mar 31 2020 21:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42100 * 108.57520 * 2 1 4 4 O 1.42097 * 108.57581 * 228.97543 * 2 1 3 5 5 C 1.81403 * 101.92295 * 114.48688 * 2 1 3 6 6 C 1.50701 * 109.46949 * 179.97438 * 5 2 1 7 7 C 1.38384 * 119.92372 * 270.02433 * 6 5 2 8 8 C 1.38349 * 120.29992 * 180.02562 * 7 6 5 9 9 C 1.37963 * 120.15240 * 359.70200 * 8 7 6 10 10 C 1.39607 * 119.84399 * 0.54944 * 9 8 7 11 11 C 1.47730 * 120.14874 * 179.75150 * 10 9 8 12 12 O 1.21473 * 119.99959 * 184.76562 * 11 10 9 13 13 O 1.34707 * 120.00176 * 4.76265 * 11 10 9 14 14 C 1.45203 * 117.00193 * 185.03470 * 13 11 10 15 15 C 1.52997 * 109.47112 * 184.94089 * 14 13 11 16 16 C 1.50703 * 115.55026 * 54.24143 * 15 14 13 17 17 H 1.07995 * 120.00063 * 215.58893 * 16 15 14 18 18 C 1.37881 * 119.99978 * 35.32195 * 16 15 14 19 19 N 1.31520 * 119.99713 * 355.73352 * 18 16 15 20 20 Si 1.86798 * 120.00106 * 175.74243 * 18 16 15 21 21 H 1.48494 * 109.47129 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47287 * 119.99538 * 20 18 16 23 23 H 1.48494 * 109.46872 * 239.99232 * 20 18 16 24 24 C 1.52998 * 117.49984 * 199.91209 * 15 14 13 25 25 C 1.52998 * 117.50038 * 268.57608 * 15 14 13 26 26 C 1.37915 * 119.92075 * 90.00280 * 6 5 2 27 27 H 1.09004 * 109.47007 * 305.50705 * 1 2 3 28 28 H 1.08998 * 109.47187 * 65.51253 * 1 2 3 29 29 H 1.08999 * 109.46707 * 185.51444 * 1 2 3 30 30 H 1.09004 * 109.47003 * 60.00098 * 5 2 1 31 31 H 1.08994 * 109.47117 * 300.00403 * 5 2 1 32 32 H 1.07994 * 119.85274 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.92489 * 179.97438 * 8 7 6 34 34 H 1.08002 * 120.08074 * 180.29797 * 9 8 7 35 35 H 1.08999 * 109.46757 * 64.94101 * 14 13 11 36 36 H 1.09004 * 109.46674 * 304.94109 * 14 13 11 37 37 H 0.97001 * 119.99482 * 185.00007 * 19 18 16 38 38 H 1.08994 * 117.50197 * 215.00604 * 24 15 14 39 39 H 1.09001 * 117.49687 * 0.02666 * 24 15 14 40 40 H 1.08996 * 117.49765 * 359.96950 * 25 15 14 41 41 H 1.08996 * 117.50044 * 144.97247 * 25 15 14 42 42 H 1.07995 * 120.08271 * 0.04282 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6153 6 6 3.6828 -0.8183 1.7951 7 6 4.3667 -1.9474 1.3800 8 6 5.7381 -2.0318 1.5418 9 6 6.4340 -0.9865 2.1133 10 6 5.7496 0.1533 2.5391 11 6 6.4874 1.2742 3.1569 12 8 5.8812 2.2268 3.6048 13 8 7.8324 1.2400 3.2235 14 6 8.4846 2.3198 3.9426 15 6 10.0020 2.1793 3.8072 16 6 10.5230 2.0884 2.3960 17 1 11.3714 1.4585 2.1731 18 6 9.9130 2.8053 1.3885 19 7 8.8266 3.5019 1.6419 20 14 10.6295 2.7868 -0.3366 21 1 11.8449 1.9340 -0.3587 22 1 9.6244 2.2416 -1.2842 23 1 10.9888 4.1706 -0.7381 24 6 10.8731 2.9019 4.8367 25 6 10.7362 1.3780 4.8842 26 6 4.3653 0.2319 2.3726 27 1 -0.3633 0.5969 0.8366 28 1 -0.3633 0.4260 -0.9352 29 1 -0.3633 -1.0229 0.0988 30 1 1.7611 -1.7370 1.6665 31 1 1.7611 -0.1172 2.4042 32 1 3.8273 -2.7669 0.9285 33 1 6.2656 -2.9160 1.2161 34 1 7.5052 -1.0516 2.2347 35 1 8.2079 2.2739 4.9959 36 1 8.1695 3.2763 3.5255 37 1 8.3565 3.9470 0.9196 38 1 11.8229 3.3118 4.4933 39 1 10.3650 3.4772 5.6107 40 1 10.1382 0.9515 5.6894 41 1 11.5958 0.7850 4.5720 42 1 3.8303 1.1124 2.6964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174733401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:26 Heat of formation + Delta-G solvation = -120.734122 kcal Electronic energy + Delta-G solvation = -26931.281808 eV Core-core repulsion = 22969.189535 eV Total energy + Delta-G solvation = -3962.092274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.43746 -40.00391 -38.49556 -37.97896 -36.99037 -36.75992 -34.27404 -34.19938 -32.32687 -30.45107 -28.75603 -28.10395 -27.43772 -25.15870 -23.04281 -23.02317 -21.59797 -21.10435 -19.82571 -18.77593 -18.54498 -17.71830 -17.58437 -17.21196 -17.05256 -16.96247 -16.73180 -16.50264 -16.03088 -15.67444 -15.22358 -14.88099 -14.47538 -14.14980 -13.93015 -13.87787 -13.79013 -13.65045 -13.57685 -13.42912 -13.07820 -12.99899 -12.95109 -12.73387 -12.71830 -12.35095 -12.28770 -12.13753 -12.12451 -11.78056 -11.66457 -11.40299 -11.19706 -10.92484 -10.70695 -10.19748 -10.11487 -9.83674 -8.01653 -6.22204 -1.04376 -0.32459 0.26477 1.37964 1.40945 1.51704 1.59048 1.89095 1.90668 2.39704 2.65427 2.80071 3.01870 3.11170 3.41311 3.52851 3.75562 3.78684 3.99516 4.12182 4.13770 4.20628 4.22481 4.31316 4.34124 4.44901 4.51802 4.59047 4.73863 4.79097 4.90476 4.91459 4.98525 5.00800 5.16837 5.24072 5.28754 5.30751 5.44461 5.51289 5.76332 5.78885 5.84663 6.30460 6.75542 6.94876 7.42370 8.89531 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.003199 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.607473 B = 8750.225387 C = 9351.858397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.396 3.604 3 O -0.996 6.996 4 O -0.978 6.978 5 C -0.550 4.550 6 C -0.113 4.113 7 C -0.068 4.068 8 C -0.125 4.125 9 C -0.064 4.064 10 C -0.144 4.144 11 C 0.492 3.508 12 O -0.552 6.552 13 O -0.325 6.325 14 C 0.126 3.874 15 C 0.003 3.997 16 C -0.493 4.493 17 H 0.060 0.940 18 C 0.027 3.973 19 N -0.907 5.907 20 Si 0.952 3.048 21 H -0.260 1.260 22 H -0.287 1.287 23 H -0.281 1.281 24 C -0.186 4.186 25 C -0.184 4.184 26 C -0.061 4.061 27 H 0.154 0.846 28 H 0.134 0.866 29 H 0.165 0.835 30 H 0.194 0.806 31 H 0.170 0.830 32 H 0.178 0.822 33 H 0.171 0.829 34 H 0.137 0.863 35 H 0.029 0.971 36 H 0.086 0.914 37 H 0.255 0.745 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.308 -15.049 0.100 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.585 3.415 3 O -0.993 6.993 4 O -0.975 6.975 5 C -0.678 4.678 6 C -0.114 4.114 7 C -0.087 4.087 8 C -0.143 4.143 9 C -0.083 4.083 10 C -0.145 4.145 11 C 0.339 3.661 12 O -0.446 6.446 13 O -0.240 6.240 14 C 0.052 3.948 15 C 0.003 3.997 16 C -0.530 4.530 17 H 0.078 0.922 18 C -0.172 4.172 19 N -0.545 5.545 20 Si 0.778 3.222 21 H -0.184 1.184 22 H -0.214 1.214 23 H -0.207 1.207 24 C -0.224 4.224 25 C -0.221 4.221 26 C -0.081 4.081 27 H 0.173 0.827 28 H 0.153 0.847 29 H 0.184 0.816 30 H 0.212 0.788 31 H 0.187 0.813 32 H 0.196 0.804 33 H 0.189 0.811 34 H 0.154 0.846 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.923 -14.264 -0.536 23.702 hybrid contribution 0.170 0.764 -0.067 0.786 sum -18.753 -13.499 -0.603 23.114 Atomic orbital electron populations 1.30050 1.20121 1.14579 1.13412 1.08292 0.80837 0.74460 0.77908 1.93583 1.81470 1.37249 1.87037 1.93540 1.81275 1.67234 1.55441 1.29308 0.97819 1.18057 1.22662 1.19154 0.94355 0.95074 1.02847 1.21918 0.94710 0.97353 0.94675 1.21584 0.94659 0.99279 0.98731 1.21788 1.01232 0.91804 0.93453 1.19341 0.94190 0.94469 1.06511 1.21744 0.82169 0.86041 0.76145 1.90694 1.70305 1.35801 1.47799 1.86470 1.18962 1.49712 1.68813 1.22634 0.91759 0.90249 0.90110 1.19061 0.88180 1.01113 0.91338 1.20739 1.14733 1.25863 0.91705 0.92178 1.25657 0.94989 0.94191 1.02408 1.69966 1.18321 1.33948 1.32300 0.85585 0.78683 0.77909 0.80014 1.18371 1.21364 1.20687 1.23003 1.02209 0.94376 1.02847 1.22968 1.03555 0.93331 1.02225 1.21322 0.92179 0.98995 0.95584 0.82730 0.84736 0.81650 0.78816 0.81256 0.80427 0.81132 0.84559 0.95326 0.89608 0.93496 0.89638 0.90014 0.89417 0.89432 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.43 10.62 113.37 1.20 -1.23 16 2 S 2.40 39.31 5.34 -56.49 -0.30 39.01 16 3 O -1.00 -29.46 18.10 -127.37 -2.30 -31.76 16 4 O -0.98 -23.07 18.10 -127.37 -2.30 -25.37 16 5 C -0.55 -5.90 5.93 71.24 0.42 -5.48 16 6 C -0.11 -2.55 5.13 -19.91 -0.10 -2.65 16 7 C -0.07 -1.34 9.69 22.33 0.22 -1.12 16 8 C -0.13 -2.87 10.03 22.23 0.22 -2.65 16 9 C -0.06 -2.08 9.62 22.54 0.22 -1.86 16 10 C -0.14 -5.58 5.87 -20.10 -0.12 -5.70 16 11 C 0.49 23.90 7.88 70.33 0.55 24.46 16 12 O -0.55 -29.21 16.06 19.92 0.32 -28.89 16 13 O -0.33 -16.80 8.99 -56.17 -0.51 -17.30 16 14 C 0.13 6.63 4.45 71.98 0.32 6.95 16 15 C 0.00 0.18 2.21 -52.93 -0.12 0.06 16 16 C -0.49 -27.32 8.79 25.60 0.23 -27.09 16 17 H 0.06 3.27 7.82 -2.91 -0.02 3.24 16 18 C 0.03 1.52 5.35 84.65 0.45 1.98 16 19 N -0.91 -54.05 10.16 21.45 0.22 -53.83 16 20 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 C -0.19 -8.20 9.96 30.62 0.30 -7.90 16 25 C -0.18 -7.73 9.92 30.62 0.30 -7.42 16 26 C -0.06 -2.00 9.24 22.54 0.21 -1.79 16 27 H 0.15 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.17 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.19 0.03 8.08 -2.39 -0.02 0.01 16 31 H 0.17 0.98 8.08 -2.39 -0.02 0.96 16 32 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.14 4.60 7.62 -2.91 -0.02 4.58 16 35 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 36 H 0.09 5.12 5.76 -2.38 -0.01 5.11 16 37 H 0.26 15.01 8.32 -92.71 -0.77 14.24 16 38 H 0.09 3.69 8.14 -2.39 -0.02 3.68 16 39 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 42 H 0.13 4.40 7.66 -2.91 -0.02 4.38 16 Total: -1.00 -89.17 376.84 2.49 -86.67 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.03 Total: 15.84 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 4.32 Total: -31.45 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.22 Total: -53.83 kcal Atomic # 8 Polarization: -98.53 SS G_CDS: -4.80 Total: -103.33 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 39.31 SS G_CDS: -0.30 Total: 39.01 kcal Total: -89.17 2.49 -86.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174733401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.060 kcal (2) G-P(sol) polarization free energy of solvation -89.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds