Wall clock time and date at job start Tue Mar 31 2020 21:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42095 * 108.57979 * 2 1 4 4 O 1.42106 * 108.57479 * 228.97972 * 2 1 3 5 5 C 1.81400 * 101.92492 * 114.49276 * 2 1 3 6 6 C 1.50696 * 109.47283 * 179.97438 * 5 2 1 7 7 C 1.38372 * 119.84592 * 89.99856 * 6 5 2 8 8 C 1.37942 * 120.15020 * 179.97438 * 7 6 5 9 9 C 1.39625 * 119.84538 * 0.02562 * 8 7 6 10 10 C 1.47734 * 120.14946 * 179.97438 * 9 8 7 11 11 O 1.21473 * 119.99637 * 5.04167 * 10 9 8 12 12 O 1.34710 * 120.00378 * 185.04468 * 10 9 8 13 13 C 1.45195 * 117.00161 * 185.03432 * 12 10 9 14 14 C 1.53001 * 109.47094 * 184.93985 * 13 12 10 15 15 C 1.50702 * 115.54977 * 54.23901 * 14 13 12 16 16 H 1.08000 * 119.99704 * 215.59385 * 15 14 13 17 17 C 1.37876 * 119.99986 * 35.32271 * 15 14 13 18 18 N 1.31512 * 119.99866 * 355.73437 * 17 15 14 19 19 Si 1.86798 * 119.99772 * 175.74055 * 17 15 14 20 20 H 1.48501 * 109.47210 * 90.00088 * 19 17 15 21 21 H 1.48504 * 109.47029 * 209.99476 * 19 17 15 22 22 H 1.48491 * 109.47343 * 329.99579 * 19 17 15 23 23 C 1.52998 * 117.49758 * 199.91077 * 14 13 12 24 24 C 1.53003 * 117.49433 * 268.57149 * 14 13 12 25 25 C 1.39624 * 119.70589 * 0.25322 * 9 8 7 26 26 C 1.37947 * 119.84368 * 359.48877 * 25 9 8 27 27 H 1.09002 * 109.46937 * 305.50920 * 1 2 3 28 28 H 1.09002 * 109.47528 * 65.50744 * 1 2 3 29 29 H 1.08998 * 109.47516 * 185.51043 * 1 2 3 30 30 H 1.09001 * 109.47046 * 59.99227 * 5 2 1 31 31 H 1.09003 * 109.46880 * 300.00047 * 5 2 1 32 32 H 1.08003 * 119.92605 * 0.02562 * 7 6 5 33 33 H 1.07998 * 120.07992 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47513 * 64.93827 * 13 12 10 35 35 H 1.09005 * 109.47199 * 304.93393 * 13 12 10 36 36 H 0.97003 * 120.00034 * 185.00339 * 18 17 15 37 37 H 1.09002 * 117.49743 * 214.99594 * 23 14 13 38 38 H 1.08998 * 117.50154 * 0.02590 * 23 14 13 39 39 H 1.08999 * 117.50143 * 359.97438 * 24 14 13 40 40 H 1.09001 * 117.49285 * 144.97588 * 24 14 13 41 41 H 1.08002 * 120.08278 * 179.74837 * 25 9 8 42 42 H 1.08000 * 119.92916 * 180.23179 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1888 -0.7358 1.6151 6 6 3.6827 -0.8185 1.7950 7 6 4.3659 0.2360 2.3747 8 6 5.7333 0.1668 2.5428 9 6 6.4280 -0.9704 2.1261 10 6 7.8925 -1.0514 2.3024 11 8 8.4829 -0.1690 2.8927 12 8 8.5733 -2.1038 1.8087 13 6 9.9907 -2.1746 2.1153 14 6 10.6143 -3.3590 1.3742 15 6 10.3899 -3.3845 -0.1158 16 1 10.2503 -4.3267 -0.6248 17 6 10.3572 -2.2046 -0.8283 18 7 10.4377 -1.0532 -0.1978 19 14 10.1984 -2.2413 -2.6891 20 1 8.7616 -2.2182 -3.0639 21 1 10.8799 -1.0555 -3.2676 22 1 10.8273 -3.4793 -3.2153 23 6 11.9478 -3.8966 1.8971 24 6 10.6630 -4.7026 2.1044 25 6 5.7331 -2.0283 1.5367 26 6 4.3650 -1.9482 1.3794 27 1 -0.3633 0.5969 0.8366 28 1 -0.3634 0.4260 -0.9352 29 1 -0.3634 -1.0229 0.0987 30 1 1.7610 -1.7371 1.6663 31 1 1.7611 -0.1173 2.4042 32 1 3.8273 1.1149 2.6969 33 1 6.2654 0.9907 2.9950 34 1 10.1241 -2.3068 3.1890 35 1 10.4773 -1.2516 1.7996 36 1 10.3420 -0.2229 -0.6901 37 1 12.6629 -4.2688 1.1634 38 1 12.3807 -3.4068 2.7693 39 1 10.2513 -4.7427 3.1129 40 1 10.5325 -5.6050 1.5071 41 1 6.2649 -2.9092 1.2084 42 1 3.8257 -2.7672 0.9270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174737580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:31 Heat of formation + Delta-G solvation = -95.798462 kcal Electronic energy + Delta-G solvation = -26752.559062 eV Core-core repulsion = 22791.548080 eV Total energy + Delta-G solvation = -3961.010982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.92714 -38.64591 -37.22905 -36.67787 -36.24249 -34.93197 -33.26602 -32.15021 -31.01997 -30.10445 -28.24402 -26.32148 -25.32940 -22.85902 -22.67737 -21.25916 -20.18409 -19.16810 -19.14046 -17.44357 -16.99224 -16.77483 -16.60180 -16.31465 -15.73675 -15.33530 -15.18697 -14.90601 -14.53739 -14.27766 -13.79367 -13.64395 -13.62209 -13.50975 -13.10893 -12.98453 -12.83321 -12.30145 -12.22162 -12.18943 -11.98324 -11.66796 -11.52146 -11.39936 -11.06684 -11.02066 -10.96637 -10.75697 -10.47958 -10.32132 -9.96336 -9.55448 -9.28882 -8.99024 -8.96330 -8.80560 -8.73560 -8.23194 -5.95508 -4.09575 -0.47288 0.87576 1.38383 2.40165 3.04032 3.31850 3.33950 3.39660 3.40918 3.54751 3.62860 3.99308 4.11385 4.23937 4.37005 4.39541 4.62491 4.89885 4.94945 4.97529 5.04333 5.19890 5.33902 5.40688 5.49013 5.59680 5.81497 6.00282 6.05074 6.20449 6.27897 6.32442 6.45844 6.51615 6.63912 6.67467 6.81420 6.83739 6.98697 7.24299 7.48609 7.61541 7.94468 8.34323 8.68699 8.88903 9.53187 10.99041 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.003121 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.114907 B = 8969.464793 C = 9893.747597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.415 3.585 3 O -0.930 6.930 4 O -0.927 6.927 5 C -0.564 4.564 6 C -0.077 4.077 7 C -0.116 4.116 8 C -0.061 4.061 9 C -0.096 4.096 10 C 0.499 3.501 11 O -0.518 6.518 12 O -0.314 6.314 13 C 0.119 3.881 14 C 0.046 3.954 15 C -0.482 4.482 16 H 0.062 0.938 17 C 0.074 3.926 18 N -0.882 5.882 19 Si 0.896 3.104 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.196 4.196 24 C -0.209 4.209 25 C -0.059 4.059 26 C -0.116 4.116 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.020 0.980 35 H 0.121 0.879 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.150 0.850 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.421 1.048 5.473 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.596 3.404 3 O -0.927 6.927 4 O -0.925 6.925 5 C -0.691 4.691 6 C -0.079 4.079 7 C -0.135 4.135 8 C -0.079 4.079 9 C -0.098 4.098 10 C 0.343 3.657 11 O -0.410 6.410 12 O -0.228 6.228 13 C 0.046 3.954 14 C 0.046 3.954 15 C -0.520 4.520 16 H 0.080 0.920 17 C -0.129 4.129 18 N -0.520 5.520 19 Si 0.723 3.277 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.234 4.234 24 C -0.246 4.246 25 C -0.077 4.077 26 C -0.135 4.135 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.038 0.962 35 H 0.138 0.862 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.168 0.832 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.595 1.785 4.894 21.243 hybrid contribution -0.642 -0.234 -0.233 0.722 sum -21.236 1.551 4.661 21.797 Atomic orbital electron populations 1.30335 1.27257 1.11493 1.11791 1.08286 0.78154 0.76192 0.77767 1.93615 1.78764 1.34220 1.86118 1.93632 1.78686 1.66887 1.53254 1.29350 1.01416 1.14726 1.23622 1.19038 0.91258 0.95994 1.01576 1.20995 0.94216 0.98340 0.99986 1.21280 0.93555 0.96839 0.96191 1.19550 0.91268 0.96328 1.02637 1.20909 0.87754 0.80855 0.76180 1.90744 1.70390 1.39328 1.40564 1.86478 1.25879 1.42636 1.67760 1.22898 0.75742 1.03249 0.93553 1.18929 0.93789 0.88269 0.94439 1.20440 1.49260 0.93016 0.89240 0.91962 1.24955 0.93869 0.95337 0.98731 1.69747 1.49215 0.97501 1.35522 0.86515 0.78427 0.77641 0.85077 1.20351 1.21097 1.19794 1.22993 0.92120 1.06160 1.02130 1.22951 1.03484 0.97917 1.00285 1.21648 0.93659 0.98687 0.93678 1.21112 0.94574 0.97640 1.00133 0.85386 0.85216 0.85333 0.83907 0.83994 0.84663 0.84029 0.96156 0.86173 0.92644 0.89792 0.91430 0.91305 0.90326 0.83220 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.25 10.62 101.05 1.07 -1.17 16 2 S 2.41 19.58 5.34 -107.50 -0.57 19.00 16 3 O -0.93 -11.34 18.10 -57.83 -1.05 -12.39 16 4 O -0.93 -11.67 18.10 -57.83 -1.05 -12.71 16 5 C -0.56 -3.51 5.93 36.00 0.21 -3.30 16 6 C -0.08 -0.88 5.15 -104.53 -0.54 -1.42 16 7 C -0.12 -1.44 9.68 -39.64 -0.38 -1.83 16 8 C -0.06 -0.93 9.60 -39.17 -0.38 -1.31 16 9 C -0.10 -1.74 5.87 -104.98 -0.62 -2.36 16 10 C 0.50 11.12 7.88 34.61 0.27 11.40 16 11 O -0.52 -12.49 16.06 -19.25 -0.31 -12.80 16 12 O -0.31 -7.59 8.99 -40.52 -0.36 -7.96 16 13 C 0.12 2.96 4.45 37.16 0.17 3.13 16 14 C 0.05 1.15 2.21 -155.66 -0.34 0.81 16 15 C -0.48 -13.09 8.79 -34.44 -0.30 -13.39 16 16 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 17 C 0.07 2.01 5.35 -17.82 -0.10 1.92 16 18 N -0.88 -24.86 10.16 55.43 0.56 -24.30 16 19 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.20 -4.35 9.96 -26.69 -0.27 -4.61 16 24 C -0.21 -4.50 9.92 -26.69 -0.26 -4.77 16 25 C -0.06 -0.94 9.62 -39.17 -0.38 -1.32 16 26 C -0.12 -1.49 9.68 -39.64 -0.38 -1.88 16 27 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 28 H 0.13 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.14 0.45 8.08 -51.92 -0.42 0.03 16 31 H 0.14 0.42 8.08 -51.92 -0.42 0.00 16 32 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.14 2.11 7.66 -52.49 -0.40 1.71 16 34 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.12 3.34 5.76 -51.93 -0.30 3.04 16 36 H 0.26 7.24 8.32 -40.82 -0.34 6.90 16 37 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 41 H 0.15 2.43 7.62 -52.49 -0.40 2.03 16 42 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -36.91 376.84 -10.05 -46.96 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.71 Total: 2.22 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.22 Total: -20.09 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.56 Total: -24.30 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -2.77 Total: -45.86 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 19.58 SS G_CDS: -0.57 Total: 19.00 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.91 -10.05 -46.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174737580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.835 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds