Wall clock time and date at job start Tue Mar 31 2020 21:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42095 * 108.57979 * 2 1 4 4 O 1.42106 * 108.57479 * 228.97972 * 2 1 3 5 5 C 1.81400 * 101.92492 * 114.49276 * 2 1 3 6 6 C 1.50696 * 109.47283 * 179.97438 * 5 2 1 7 7 C 1.38372 * 119.84592 * 89.99856 * 6 5 2 8 8 C 1.37942 * 120.15020 * 179.97438 * 7 6 5 9 9 C 1.39625 * 119.84538 * 0.02562 * 8 7 6 10 10 C 1.47734 * 120.14946 * 179.97438 * 9 8 7 11 11 O 1.21473 * 119.99637 * 5.04167 * 10 9 8 12 12 O 1.34710 * 120.00378 * 185.04468 * 10 9 8 13 13 C 1.45195 * 117.00161 * 185.03432 * 12 10 9 14 14 C 1.53001 * 109.47094 * 184.93985 * 13 12 10 15 15 C 1.50702 * 115.54977 * 54.23901 * 14 13 12 16 16 H 1.08000 * 119.99704 * 215.59385 * 15 14 13 17 17 C 1.37876 * 119.99986 * 35.32271 * 15 14 13 18 18 N 1.31512 * 119.99866 * 355.73437 * 17 15 14 19 19 Si 1.86798 * 119.99772 * 175.74055 * 17 15 14 20 20 H 1.48501 * 109.47210 * 90.00088 * 19 17 15 21 21 H 1.48504 * 109.47029 * 209.99476 * 19 17 15 22 22 H 1.48491 * 109.47343 * 329.99579 * 19 17 15 23 23 C 1.52998 * 117.49758 * 199.91077 * 14 13 12 24 24 C 1.53003 * 117.49433 * 268.57149 * 14 13 12 25 25 C 1.39624 * 119.70589 * 0.25322 * 9 8 7 26 26 C 1.37947 * 119.84368 * 359.48877 * 25 9 8 27 27 H 1.09002 * 109.46937 * 305.50920 * 1 2 3 28 28 H 1.09002 * 109.47528 * 65.50744 * 1 2 3 29 29 H 1.08998 * 109.47516 * 185.51043 * 1 2 3 30 30 H 1.09001 * 109.47046 * 59.99227 * 5 2 1 31 31 H 1.09003 * 109.46880 * 300.00047 * 5 2 1 32 32 H 1.08003 * 119.92605 * 0.02562 * 7 6 5 33 33 H 1.07998 * 120.07992 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47513 * 64.93827 * 13 12 10 35 35 H 1.09005 * 109.47199 * 304.93393 * 13 12 10 36 36 H 0.97003 * 120.00034 * 185.00339 * 18 17 15 37 37 H 1.09002 * 117.49743 * 214.99594 * 23 14 13 38 38 H 1.08998 * 117.50154 * 0.02590 * 23 14 13 39 39 H 1.08999 * 117.50143 * 359.97438 * 24 14 13 40 40 H 1.09001 * 117.49285 * 144.97588 * 24 14 13 41 41 H 1.08002 * 120.08278 * 179.74837 * 25 9 8 42 42 H 1.08000 * 119.92916 * 180.23179 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1888 -0.7358 1.6151 6 6 3.6827 -0.8185 1.7950 7 6 4.3659 0.2360 2.3747 8 6 5.7333 0.1668 2.5428 9 6 6.4280 -0.9704 2.1261 10 6 7.8925 -1.0514 2.3024 11 8 8.4829 -0.1690 2.8927 12 8 8.5733 -2.1038 1.8087 13 6 9.9907 -2.1746 2.1153 14 6 10.6143 -3.3590 1.3742 15 6 10.3899 -3.3845 -0.1158 16 1 10.2503 -4.3267 -0.6248 17 6 10.3572 -2.2046 -0.8283 18 7 10.4377 -1.0532 -0.1978 19 14 10.1984 -2.2413 -2.6891 20 1 8.7616 -2.2182 -3.0639 21 1 10.8799 -1.0555 -3.2676 22 1 10.8273 -3.4793 -3.2153 23 6 11.9478 -3.8966 1.8971 24 6 10.6630 -4.7026 2.1044 25 6 5.7331 -2.0283 1.5367 26 6 4.3650 -1.9482 1.3794 27 1 -0.3633 0.5969 0.8366 28 1 -0.3634 0.4260 -0.9352 29 1 -0.3634 -1.0229 0.0987 30 1 1.7610 -1.7371 1.6663 31 1 1.7611 -0.1173 2.4042 32 1 3.8273 1.1149 2.6969 33 1 6.2654 0.9907 2.9950 34 1 10.1241 -2.3068 3.1890 35 1 10.4773 -1.2516 1.7996 36 1 10.3420 -0.2229 -0.6901 37 1 12.6629 -4.2688 1.1634 38 1 12.3807 -3.4068 2.7693 39 1 10.2513 -4.7427 3.1129 40 1 10.5325 -5.6050 1.5071 41 1 6.2649 -2.9092 1.2084 42 1 3.8257 -2.7672 0.9270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174737580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:30 Heat of formation + Delta-G solvation = -120.680335 kcal Electronic energy + Delta-G solvation = -26753.638021 eV Core-core repulsion = 22791.548080 eV Total energy + Delta-G solvation = -3962.089941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43094 -40.01980 -38.50627 -37.95490 -36.96498 -36.76501 -34.26858 -34.20069 -32.12660 -30.47043 -29.33637 -28.02473 -27.32852 -24.15410 -23.78672 -23.01103 -21.61760 -21.10438 -19.78978 -18.93583 -18.57066 -17.75280 -17.54575 -17.25473 -17.18521 -16.94804 -16.50463 -16.09459 -16.02899 -15.74629 -15.22165 -14.84570 -14.57007 -14.20746 -13.95417 -13.84695 -13.77931 -13.66263 -13.56485 -13.40760 -13.04500 -12.97122 -12.94449 -12.90611 -12.73359 -12.33500 -12.14732 -12.11921 -12.11262 -11.80556 -11.65296 -11.40329 -11.20514 -10.92177 -10.70025 -10.19453 -10.09699 -9.87322 -8.01757 -6.21998 -1.09229 -0.27024 0.27700 1.39212 1.41292 1.50137 1.56503 1.91379 1.91976 2.39687 2.65530 2.80628 3.01869 3.13790 3.40977 3.55237 3.68326 3.84456 3.91389 4.09667 4.16788 4.22602 4.25707 4.33062 4.37762 4.47351 4.53530 4.58236 4.75815 4.80316 4.90539 4.93870 4.98171 5.04082 5.14276 5.20076 5.24573 5.33437 5.44515 5.51315 5.74750 5.78339 5.84727 6.30552 6.75330 6.94880 7.42352 8.89461 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.003121 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.114907 B = 8969.464793 C = 9893.747597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.400 3.600 3 O -0.985 6.985 4 O -0.987 6.987 5 C -0.556 4.556 6 C -0.066 4.066 7 C -0.115 4.115 8 C -0.070 4.070 9 C -0.135 4.135 10 C 0.493 3.507 11 O -0.551 6.551 12 O -0.326 6.326 13 C 0.126 3.874 14 C 0.004 3.996 15 C -0.495 4.495 16 H 0.059 0.941 17 C 0.029 3.971 18 N -0.906 5.906 19 Si 0.950 3.050 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.261 1.261 23 C -0.186 4.186 24 C -0.184 4.184 25 C -0.072 4.072 26 C -0.118 4.118 27 H 0.161 0.839 28 H 0.133 0.867 29 H 0.159 0.841 30 H 0.185 0.815 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.136 0.864 34 H 0.029 0.971 35 H 0.087 0.913 36 H 0.256 0.744 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.136 0.864 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.545 0.084 6.052 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.589 3.411 3 O -0.982 6.982 4 O -0.984 6.984 5 C -0.684 4.684 6 C -0.068 4.068 7 C -0.134 4.134 8 C -0.088 4.088 9 C -0.136 4.136 10 C 0.339 3.661 11 O -0.445 6.445 12 O -0.241 6.241 13 C 0.052 3.948 14 C 0.003 3.997 15 C -0.532 4.532 16 H 0.077 0.923 17 C -0.171 4.171 18 N -0.545 5.545 19 Si 0.776 3.224 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.186 1.186 23 C -0.224 4.224 24 C -0.221 4.221 25 C -0.090 4.090 26 C -0.137 4.137 27 H 0.179 0.821 28 H 0.152 0.848 29 H 0.178 0.822 30 H 0.203 0.797 31 H 0.205 0.795 32 H 0.189 0.811 33 H 0.154 0.846 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.154 0.846 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -24.669 0.804 5.456 25.278 hybrid contribution 0.431 0.052 -0.349 0.557 sum -24.237 0.855 5.107 24.784 Atomic orbital electron populations 1.30055 1.20104 1.14414 1.13586 1.08190 0.80766 0.74502 0.77689 1.93556 1.81345 1.36435 1.86881 1.93569 1.81359 1.67620 1.55867 1.29405 0.97558 1.18141 1.23254 1.19591 0.94447 0.94341 0.98380 1.21443 0.92881 0.99876 0.99155 1.21400 0.95156 0.95833 0.96446 1.19468 0.88774 0.98810 1.06583 1.21749 0.89484 0.79792 0.75048 1.90694 1.71466 1.40143 1.42151 1.86478 1.25500 1.43683 1.68402 1.22639 0.76279 1.01974 0.93869 1.19059 0.96404 0.90291 0.93923 1.20708 1.48921 0.92834 0.90724 0.92275 1.25627 0.94008 0.95116 1.02345 1.69949 1.50468 0.97642 1.36409 0.85666 0.78073 0.77865 0.80817 1.20613 1.21169 1.18552 1.23006 0.91621 1.05463 1.02333 1.22971 1.02136 0.96293 1.00745 1.21640 0.95327 0.97815 0.94243 1.21490 0.93230 0.99362 0.99607 0.82096 0.84843 0.82225 0.79740 0.79531 0.81109 0.84572 0.95284 0.89493 0.93421 0.89670 0.89950 0.89395 0.89488 0.84599 0.81616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.75 10.62 113.37 1.20 0.46 16 2 S 2.40 31.92 5.34 -56.49 -0.30 31.61 16 3 O -0.98 -22.67 18.10 -127.37 -2.30 -24.98 16 4 O -0.99 -23.69 18.10 -127.37 -2.31 -26.00 16 5 C -0.56 -4.01 5.93 71.23 0.42 -3.59 16 6 C -0.07 -1.33 5.15 -19.80 -0.10 -1.43 16 7 C -0.12 -2.65 9.68 22.23 0.22 -2.43 16 8 C -0.07 -2.23 9.60 22.53 0.22 -2.01 16 9 C -0.13 -5.16 5.87 -20.10 -0.12 -5.28 16 10 C 0.49 23.56 7.88 70.33 0.55 24.12 16 11 O -0.55 -28.54 16.06 19.92 0.32 -28.22 16 12 O -0.33 -16.77 8.99 -56.20 -0.51 -17.28 16 13 C 0.13 6.59 4.45 71.98 0.32 6.91 16 14 C 0.00 0.18 2.21 -52.93 -0.12 0.07 16 15 C -0.49 -27.44 8.79 25.60 0.23 -27.22 16 16 H 0.06 3.22 7.82 -2.91 -0.02 3.20 16 17 C 0.03 1.61 5.35 84.65 0.45 2.06 16 18 N -0.91 -53.54 10.16 21.45 0.22 -53.32 16 19 Si 0.95 45.08 29.54 68.60 2.03 47.11 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 23 C -0.19 -8.19 9.96 30.62 0.30 -7.88 16 24 C -0.18 -7.77 9.92 30.62 0.30 -7.46 16 25 C -0.07 -2.39 9.62 22.54 0.22 -2.18 16 26 C -0.12 -2.88 9.68 22.23 0.22 -2.67 16 27 H 0.16 -0.72 8.14 -2.39 -0.02 -0.74 16 28 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.16 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.18 -0.09 8.08 -2.39 -0.02 -0.11 16 31 H 0.19 -0.21 8.08 -2.39 -0.02 -0.23 16 32 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.14 4.32 7.66 -2.91 -0.02 4.29 16 34 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 35 H 0.09 5.14 5.76 -2.38 -0.01 5.13 16 36 H 0.26 14.87 8.32 -92.71 -0.77 14.10 16 37 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.14 4.73 7.62 -2.91 -0.02 4.71 16 42 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -87.92 376.84 2.49 -85.43 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.03 Total: 14.19 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 4.31 Total: -28.54 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.22 Total: -53.32 kcal Atomic # 8 Polarization: -91.68 SS G_CDS: -4.80 Total: -96.48 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 31.92 SS G_CDS: -0.30 Total: 31.61 kcal Total: -87.92 2.49 -85.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174737580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.254 kcal (2) G-P(sol) polarization free energy of solvation -87.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds