Wall clock time and date at job start Tue Mar 31 2020 21:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99955 * 2 1 4 4 H 1.48497 * 109.46920 * 270.00140 * 3 2 1 5 5 H 1.48496 * 109.47131 * 30.00099 * 3 2 1 6 6 H 1.48494 * 109.47127 * 150.00091 * 3 2 1 7 7 C 1.37883 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99630 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00088 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47451 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47485 * 179.97438 * 10 9 7 12 12 S 1.65602 * 120.00051 * 164.99588 * 11 10 9 13 13 O 1.42102 * 106.40118 * 311.46199 * 12 11 10 14 14 O 1.42097 * 106.40385 * 178.54110 * 12 11 10 15 15 C 1.76200 * 107.21639 * 64.99876 * 12 11 10 16 16 C 1.38329 * 120.28633 * 270.31486 * 15 12 11 17 17 C 1.37317 * 119.56036 * 180.43424 * 16 15 12 18 18 C 1.40579 * 121.47247 * 359.50868 * 17 16 15 19 19 C 1.37838 * 118.70434 * 359.86630 * 18 17 16 20 20 C 1.37583 * 120.27729 * 90.00374 * 15 12 11 21 21 C 1.49398 * 125.12196 * 180.83558 * 19 18 17 22 22 C 1.49694 * 115.79974 * 35.45415 * 21 19 18 23 23 C 1.50974 * 113.45178 * 282.38256 * 22 21 19 24 24 C 1.48668 * 111.90728 * 73.37741 * 23 22 21 25 25 O 1.21281 * 116.43313 * 144.38189 * 24 23 22 26 26 N 1.30282 * 127.13448 * 324.39048 * 24 23 22 27 27 H 0.96998 * 120.00283 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47192 * 59.99352 * 9 7 2 29 29 H 1.09009 * 109.47078 * 299.99735 * 9 7 2 30 30 H 1.08997 * 109.47366 * 59.99223 * 10 9 7 31 31 H 1.09009 * 109.46739 * 299.99913 * 10 9 7 32 32 H 0.97000 * 120.00248 * 345.00313 * 11 10 9 33 33 H 1.08003 * 120.21846 * 0.15545 * 16 15 12 34 34 H 1.08002 * 119.26670 * 179.79608 * 17 16 15 35 35 H 1.07997 * 119.25035 * 359.93605 * 20 15 12 36 36 H 1.08997 * 108.21302 * 157.09580 * 21 19 18 37 37 H 1.08998 * 108.21733 * 274.00862 * 21 19 18 38 38 H 1.08999 * 108.68559 * 43.40591 * 22 21 19 39 39 H 1.09002 * 108.68350 * 161.48690 * 22 21 19 40 40 H 1.09002 * 108.99246 * 194.00345 * 23 22 21 41 41 H 1.09002 * 108.99287 * 312.83105 * 23 22 21 42 42 H 0.96992 * 111.84365 * 189.99723 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 7 5.4866 -2.6365 -0.0035 12 16 6.3150 -4.0219 0.3664 13 8 5.7349 -4.5296 1.5602 14 8 7.6956 -3.7083 0.2455 15 6 5.9587 -5.1959 -0.8982 16 6 4.8768 -6.0488 -0.7736 17 6 4.6181 -6.9641 -1.7641 18 6 5.4239 -7.0498 -2.9128 19 6 6.4928 -6.1886 -3.0375 20 6 6.7505 -5.2678 -2.0211 21 6 7.4285 -6.1427 -4.2013 22 6 6.8166 -6.4144 -5.5402 23 6 6.5594 -7.8797 -5.7972 24 6 5.4054 -8.3868 -5.0091 25 8 4.7094 -9.2218 -5.5470 26 7 5.0595 -8.0326 -3.8040 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6803 0.8888 29 1 3.8745 -0.6800 -0.8912 30 1 3.6579 -3.1498 -0.8924 31 1 3.6586 -3.1509 0.8876 32 1 5.9715 -1.8249 -0.2208 33 1 4.2424 -5.9982 0.0990 34 1 3.7741 -7.6300 -1.6604 35 1 7.5908 -4.5963 -2.1180 36 1 7.8876 -5.1546 -4.2306 37 1 8.2162 -6.8773 -4.0344 38 1 5.8709 -5.8767 -5.6075 39 1 7.4870 -6.0385 -6.3132 40 1 6.3550 -8.0232 -6.8582 41 1 7.4492 -8.4487 -5.5275 42 1 4.3688 -8.6096 -3.4425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273440542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:04 Heat of formation + Delta-G solvation = -87.362525 kcal Electronic energy + Delta-G solvation = -26770.038226 eV Core-core repulsion = 22841.685805 eV Total energy + Delta-G solvation = -3928.352422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65789 -39.42690 -37.14629 -36.07579 -35.77144 -35.65047 -35.55828 -32.72691 -31.87597 -30.53518 -29.73555 -27.68257 -25.01155 -24.60915 -23.53225 -21.77043 -20.95575 -20.37553 -19.22895 -18.44885 -17.77966 -17.59462 -17.09466 -16.82629 -16.06076 -15.82393 -15.53209 -15.19719 -14.63795 -14.41273 -14.37891 -14.25671 -14.10131 -14.01038 -13.89050 -13.40259 -12.73471 -12.67455 -12.42333 -12.17529 -12.00376 -11.90551 -11.79504 -11.74895 -11.65397 -11.41806 -11.39605 -11.31491 -10.93161 -10.51997 -10.45909 -10.09944 -9.91978 -9.37741 -9.23279 -9.06926 -8.65958 -8.63494 -6.14081 -4.14332 0.30344 0.61336 0.92210 2.08184 2.54049 3.04372 3.24274 3.32989 3.34030 3.34916 3.85395 3.92816 4.08709 4.26422 4.30825 4.36307 4.40348 4.46705 4.64683 4.90182 4.94024 5.06146 5.13491 5.19742 5.31468 5.36794 5.47696 5.54128 5.58095 5.62484 5.68506 5.70017 5.84328 6.01456 6.10771 6.22019 6.37235 6.46807 6.97215 7.08274 7.17792 7.25419 7.45836 7.65488 8.39173 8.88704 9.46586 10.98744 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.003076 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.351377 B = 9101.031205 C =10102.299767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.076 0.924 9 C -0.018 4.018 10 C 0.126 3.874 11 N -1.114 6.114 12 S 2.696 3.304 13 O -0.957 6.957 14 O -0.970 6.970 15 C -0.693 4.693 16 C 0.013 3.987 17 C -0.182 4.182 18 C 0.226 3.774 19 C -0.140 4.140 20 C 0.018 3.982 21 C -0.081 4.081 22 C -0.123 4.123 23 C -0.137 4.137 24 C 0.528 3.472 25 O -0.541 6.541 26 N -0.647 5.647 27 H 0.265 0.735 28 H 0.026 0.974 29 H 0.019 0.981 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.416 0.584 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.498 -14.092 -9.061 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.057 4.057 10 C 0.001 3.999 11 N -0.876 5.876 12 S 2.785 3.215 13 O -0.946 6.946 14 O -0.960 6.960 15 C -0.780 4.780 16 C -0.007 4.007 17 C -0.203 4.203 18 C 0.128 3.872 19 C -0.144 4.144 20 C -0.002 4.002 21 C -0.118 4.118 22 C -0.161 4.161 23 C -0.177 4.177 24 C 0.317 3.683 25 O -0.419 6.419 26 N -0.284 5.284 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.250 0.750 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 16.635 -14.606 -8.830 23.834 hybrid contribution -0.161 0.821 -0.619 1.041 sum 16.474 -13.785 -9.449 23.467 Atomic orbital electron populations 1.69895 1.06299 1.27108 1.50353 1.24993 0.94747 0.99187 0.94308 0.86779 0.80434 0.83558 0.78518 1.20262 1.21278 1.18884 1.20944 0.88725 0.94850 1.51871 0.90611 1.19757 0.97640 0.91022 0.97245 1.21472 0.75049 1.02148 1.01218 1.55536 1.17566 1.26200 1.88261 1.01750 0.72752 0.73024 0.73993 1.93589 1.78654 1.80019 1.42383 1.93557 1.31439 1.83915 1.87133 1.30977 1.07785 1.20698 1.18578 1.20642 0.92763 0.90044 0.97266 1.21295 1.01457 1.03342 0.94245 1.17253 0.93164 0.88358 0.88461 1.19143 0.97318 0.99232 0.98661 1.20960 0.95649 0.93996 0.89609 1.19648 0.97090 1.04063 0.91036 1.20507 1.02996 0.94936 0.97641 1.21142 0.97064 0.97866 1.01586 1.19301 0.86672 0.81823 0.80490 1.90858 1.51286 1.34015 1.65763 1.42402 1.40804 1.30110 1.15062 0.92538 0.95561 0.96280 0.92307 0.90614 0.74975 0.83201 0.84482 0.83864 0.89485 0.90497 0.91170 0.89454 0.87241 0.87900 0.76451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.96 55.43 0.77 -25.89 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.53 -14.04 9.66 -34.44 -0.33 -14.38 16 8 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.02 -0.38 4.18 -27.89 -0.12 -0.50 16 10 C 0.13 2.22 6.16 -4.04 -0.02 2.19 16 11 N -1.11 -16.11 6.00 -10.61 -0.06 -16.18 16 12 S 2.70 37.47 5.74 -107.50 -0.62 36.85 16 13 O -0.96 -16.01 16.80 -57.17 -0.96 -16.97 16 14 O -0.97 -14.71 17.27 -57.17 -0.99 -15.70 16 15 C -0.69 -8.27 5.93 -39.79 -0.24 -8.50 16 16 C 0.01 0.14 9.52 -39.88 -0.38 -0.24 16 17 C -0.18 -1.76 9.51 -39.03 -0.37 -2.13 16 18 C 0.23 2.14 6.64 -84.55 -0.56 1.58 16 19 C -0.14 -1.29 5.69 -104.90 -0.60 -1.89 16 20 C 0.02 0.18 8.91 -39.33 -0.35 -0.17 16 21 C -0.08 -0.53 5.23 -30.14 -0.16 -0.69 16 22 C -0.12 -0.72 5.27 -29.38 -0.15 -0.87 16 23 C -0.14 -0.87 5.63 -29.87 -0.17 -1.04 16 24 C 0.53 5.02 7.51 -13.90 -0.10 4.91 16 25 O -0.54 -7.05 17.43 5.56 0.10 -6.95 16 26 N -0.65 -5.70 4.78 -11.87 -0.06 -5.75 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.03 0.58 7.20 -51.93 -0.37 0.20 16 29 H 0.02 0.40 7.57 -51.92 -0.39 0.00 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.36 7.75 -51.92 -0.40 0.96 16 32 H 0.42 5.32 8.65 -34.47 -0.30 5.02 16 33 H 0.15 1.59 7.67 -52.48 -0.40 1.19 16 34 H 0.14 0.99 7.70 -52.49 -0.40 0.58 16 35 H 0.14 1.26 7.30 -52.49 -0.38 0.88 16 36 H 0.09 0.47 7.65 -51.93 -0.40 0.08 16 37 H 0.08 0.42 7.93 -51.93 -0.41 0.01 16 38 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.11 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.10 0.49 7.97 -51.93 -0.41 0.07 16 42 H 0.40 3.16 7.46 -40.82 -0.30 2.86 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -35.35 359.09 -10.18 -45.53 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.45 Total: 3.50 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.65 Total: -19.86 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.65 Total: -47.82 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.85 Total: -39.62 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Atomic # 16 Polarization: 37.47 SS G_CDS: -0.62 Total: 36.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.35 -10.18 -45.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273440542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.836 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds