Wall clock time and date at job start Tue Mar 31 2020 21:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99955 * 2 1 4 4 H 1.48497 * 109.46920 * 270.00140 * 3 2 1 5 5 H 1.48496 * 109.47131 * 30.00099 * 3 2 1 6 6 H 1.48494 * 109.47127 * 150.00091 * 3 2 1 7 7 C 1.37883 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99630 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00088 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47451 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47485 * 179.97438 * 10 9 7 12 12 S 1.65602 * 120.00051 * 164.99588 * 11 10 9 13 13 O 1.42102 * 106.40118 * 311.46199 * 12 11 10 14 14 O 1.42097 * 106.40385 * 178.54110 * 12 11 10 15 15 C 1.76200 * 107.21639 * 64.99876 * 12 11 10 16 16 C 1.38329 * 120.28633 * 270.31486 * 15 12 11 17 17 C 1.37317 * 119.56036 * 180.43424 * 16 15 12 18 18 C 1.40579 * 121.47247 * 359.50868 * 17 16 15 19 19 C 1.37838 * 118.70434 * 359.86630 * 18 17 16 20 20 C 1.37583 * 120.27729 * 90.00374 * 15 12 11 21 21 C 1.49398 * 125.12196 * 180.83558 * 19 18 17 22 22 C 1.49694 * 115.79974 * 35.45415 * 21 19 18 23 23 C 1.50974 * 113.45178 * 282.38256 * 22 21 19 24 24 C 1.48668 * 111.90728 * 73.37741 * 23 22 21 25 25 O 1.21281 * 116.43313 * 144.38189 * 24 23 22 26 26 N 1.30282 * 127.13448 * 324.39048 * 24 23 22 27 27 H 0.96998 * 120.00283 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47192 * 59.99352 * 9 7 2 29 29 H 1.09009 * 109.47078 * 299.99735 * 9 7 2 30 30 H 1.08997 * 109.47366 * 59.99223 * 10 9 7 31 31 H 1.09009 * 109.46739 * 299.99913 * 10 9 7 32 32 H 0.97000 * 120.00248 * 345.00313 * 11 10 9 33 33 H 1.08003 * 120.21846 * 0.15545 * 16 15 12 34 34 H 1.08002 * 119.26670 * 179.79608 * 17 16 15 35 35 H 1.07997 * 119.25035 * 359.93605 * 20 15 12 36 36 H 1.08997 * 108.21302 * 157.09580 * 21 19 18 37 37 H 1.08998 * 108.21733 * 274.00862 * 21 19 18 38 38 H 1.08999 * 108.68559 * 43.40591 * 22 21 19 39 39 H 1.09002 * 108.68350 * 161.48690 * 22 21 19 40 40 H 1.09002 * 108.99246 * 194.00345 * 23 22 21 41 41 H 1.09002 * 108.99287 * 312.83105 * 23 22 21 42 42 H 0.96992 * 111.84365 * 189.99723 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 7 5.4866 -2.6365 -0.0035 12 16 6.3150 -4.0219 0.3664 13 8 5.7349 -4.5296 1.5602 14 8 7.6956 -3.7083 0.2455 15 6 5.9587 -5.1959 -0.8982 16 6 4.8768 -6.0488 -0.7736 17 6 4.6181 -6.9641 -1.7641 18 6 5.4239 -7.0498 -2.9128 19 6 6.4928 -6.1886 -3.0375 20 6 6.7505 -5.2678 -2.0211 21 6 7.4285 -6.1427 -4.2013 22 6 6.8166 -6.4144 -5.5402 23 6 6.5594 -7.8797 -5.7972 24 6 5.4054 -8.3868 -5.0091 25 8 4.7094 -9.2218 -5.5470 26 7 5.0595 -8.0326 -3.8040 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6803 0.8888 29 1 3.8745 -0.6800 -0.8912 30 1 3.6579 -3.1498 -0.8924 31 1 3.6586 -3.1509 0.8876 32 1 5.9715 -1.8249 -0.2208 33 1 4.2424 -5.9982 0.0990 34 1 3.7741 -7.6300 -1.6604 35 1 7.5908 -4.5963 -2.1180 36 1 7.8876 -5.1546 -4.2306 37 1 8.2162 -6.8773 -4.0344 38 1 5.8709 -5.8767 -5.6075 39 1 7.4870 -6.0385 -6.3132 40 1 6.3550 -8.0232 -6.8582 41 1 7.4492 -8.4487 -5.5275 42 1 4.3688 -8.6096 -3.4425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273440542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:03 Heat of formation + Delta-G solvation = -113.933243 kcal Electronic energy + Delta-G solvation = -26771.190419 eV Core-core repulsion = 22841.685805 eV Total energy + Delta-G solvation = -3929.504614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38162 -40.21794 -38.34309 -37.07145 -36.94685 -36.68765 -36.36390 -34.68535 -32.55701 -31.49299 -31.32823 -28.27428 -26.37805 -25.74168 -24.31792 -22.67530 -22.34854 -21.18270 -20.32048 -19.18022 -19.07042 -18.54467 -18.37154 -18.13472 -17.01631 -16.78158 -16.23323 -16.17122 -16.09470 -15.71877 -15.49907 -15.11540 -14.99804 -14.92217 -14.61607 -14.60562 -14.22188 -13.53075 -13.44883 -13.36039 -13.25546 -13.22904 -13.07384 -13.01400 -12.40996 -12.34539 -12.21808 -12.11156 -12.03615 -11.84044 -11.78408 -11.69617 -11.42174 -11.19647 -10.75249 -10.36127 -9.97985 -9.43777 -8.26301 -6.31315 -0.65416 -0.37165 0.15248 1.32772 1.40124 1.43118 1.53679 1.83147 2.03561 2.39273 2.42774 2.78749 3.09750 3.26475 3.34420 3.53044 3.62975 3.85142 3.86918 4.04205 4.18301 4.20067 4.23891 4.47023 4.52114 4.65136 4.67386 4.70289 4.80032 4.83249 4.90543 4.95536 5.01612 5.06621 5.12653 5.22390 5.40593 5.41801 5.48936 5.59869 5.64938 6.11654 6.25127 6.29685 6.74098 6.77070 7.33284 8.89792 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.003076 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.351377 B = 9101.031205 C =10102.299767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.242 1.242 7 C -0.532 4.532 8 H 0.041 0.959 9 C -0.018 4.018 10 C 0.137 3.863 11 N -1.110 6.110 12 S 2.714 3.286 13 O -0.990 6.990 14 O -0.980 6.980 15 C -0.700 4.700 16 C -0.007 4.007 17 C -0.183 4.183 18 C 0.223 3.777 19 C -0.137 4.137 20 C 0.012 3.988 21 C -0.087 4.087 22 C -0.118 4.118 23 C -0.135 4.135 24 C 0.526 3.474 25 O -0.583 6.583 26 N -0.642 5.642 27 H 0.266 0.734 28 H 0.028 0.972 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.425 0.575 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.308 -13.708 -10.537 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.571 4.571 8 H 0.059 0.941 9 C -0.057 4.057 10 C 0.011 3.989 11 N -0.872 5.872 12 S 2.806 3.194 13 O -0.980 6.980 14 O -0.971 6.971 15 C -0.790 4.790 16 C -0.027 4.027 17 C -0.204 4.204 18 C 0.125 3.875 19 C -0.141 4.141 20 C -0.008 4.008 21 C -0.123 4.123 22 C -0.155 4.155 23 C -0.174 4.174 24 C 0.317 3.683 25 O -0.463 6.463 26 N -0.279 5.279 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.261 0.739 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.178 0.822 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 19.486 -14.192 -10.271 26.203 hybrid contribution -1.064 0.554 -0.196 1.215 sum 18.423 -13.638 -10.467 25.198 Atomic orbital electron populations 1.70056 1.08340 1.28165 1.52437 1.25973 0.95564 1.03486 0.94126 0.85694 0.79675 0.78257 0.79247 1.18976 1.21594 1.16566 1.21330 0.91543 0.93545 1.50656 0.94103 1.19701 0.94312 0.93809 0.97908 1.21134 0.76751 0.99637 1.01404 1.55322 1.16047 1.27355 1.88439 1.00946 0.72040 0.72694 0.73700 1.93546 1.79122 1.80438 1.44876 1.93537 1.31860 1.84248 1.87440 1.30578 1.09025 1.20693 1.18706 1.20745 0.93092 0.90898 0.97963 1.21520 1.01983 1.03061 0.93821 1.17369 0.93325 0.88468 0.88372 1.19502 0.97249 0.98088 0.99240 1.21231 0.95847 0.94547 0.89204 1.19793 0.96786 1.05660 0.90100 1.20504 1.02782 0.94170 0.98091 1.21222 0.96317 0.98519 1.01359 1.19947 0.87008 0.81016 0.80340 1.90844 1.52911 1.35994 1.66596 1.42383 1.40682 1.29825 1.14968 0.92527 0.95321 0.94619 0.91360 0.91524 0.73900 0.83392 0.82547 0.82171 0.87896 0.88717 0.92821 0.86739 0.86584 0.85708 0.76231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.79 13.96 21.45 0.30 -57.49 16 2 C 0.01 0.32 5.47 84.66 0.46 0.78 16 3 Si 0.95 42.00 27.47 68.60 1.88 43.89 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 7 C -0.53 -28.81 9.66 25.60 0.25 -28.57 16 8 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 9 C -0.02 -0.77 4.18 29.85 0.12 -0.65 16 10 C 0.14 4.73 6.16 86.38 0.53 5.26 16 11 N -1.11 -30.60 6.00 -187.49 -1.12 -31.72 16 12 S 2.71 73.08 5.74 -56.49 -0.32 72.75 16 13 O -0.99 -33.19 16.80 -128.00 -2.15 -35.34 16 14 O -0.98 -28.24 17.27 -128.00 -2.21 -30.46 16 15 C -0.70 -15.90 5.93 22.14 0.13 -15.77 16 16 C -0.01 -0.16 9.52 22.07 0.21 0.05 16 17 C -0.18 -3.35 9.51 22.62 0.22 -3.14 16 18 C 0.22 3.87 6.64 38.72 0.26 4.13 16 19 C -0.14 -2.20 5.69 -20.05 -0.11 -2.31 16 20 C 0.01 0.22 8.91 22.43 0.20 0.42 16 21 C -0.09 -0.82 5.23 28.38 0.15 -0.67 16 22 C -0.12 -0.98 5.27 28.88 0.15 -0.83 16 23 C -0.14 -1.34 5.63 28.56 0.16 -1.18 16 24 C 0.53 9.27 7.51 87.71 0.66 9.93 16 25 O -0.58 -14.89 17.43 -3.03 -0.05 -14.94 16 26 N -0.64 -10.48 4.78 -312.27 -1.49 -11.97 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.03 1.20 7.20 -2.38 -0.02 1.18 16 29 H 0.04 1.40 7.57 -2.38 -0.02 1.38 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.07 2.42 7.75 -2.38 -0.02 2.40 16 32 H 0.42 9.99 8.65 -96.75 -0.84 9.16 16 33 H 0.15 3.21 7.67 -2.91 -0.02 3.19 16 34 H 0.16 2.11 7.70 -2.91 -0.02 2.09 16 35 H 0.16 2.36 7.30 -2.91 -0.02 2.33 16 36 H 0.10 0.69 7.65 -2.39 -0.02 0.67 16 37 H 0.09 0.62 7.93 -2.39 -0.02 0.61 16 38 H 0.05 0.65 8.06 -2.39 -0.02 0.63 16 39 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.12 1.04 8.08 -2.39 -0.02 1.02 16 41 H 0.13 0.74 7.97 -2.39 -0.02 0.72 16 42 H 0.40 6.06 7.46 -92.71 -0.69 5.37 16 Total: -1.00 -77.22 359.09 -2.29 -79.52 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.51 Total: 18.32 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.39 Total: -32.55 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -2.32 Total: -101.19 kcal Atomic # 8 Polarization: -76.33 SS G_CDS: -4.41 Total: -80.74 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.89 kcal Atomic # 16 Polarization: 73.08 SS G_CDS: -0.32 Total: 72.75 kcal Total: -77.22 -2.29 -79.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273440542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.418 kcal (2) G-P(sol) polarization free energy of solvation -77.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds