Wall clock time and date at job start Tue Mar 31 2020 20:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86804 * 120.00252 * 2 1 4 4 H 1.48494 * 109.47232 * 85.18159 * 3 2 1 5 5 H 1.48500 * 109.47151 * 205.18653 * 3 2 1 6 6 H 1.48500 * 109.46807 * 325.18292 * 3 2 1 7 7 C 1.39946 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99999 * 197.42703 * 7 2 1 9 9 C 1.41393 * 119.99909 * 17.43021 * 7 2 1 10 10 C 1.40717 * 120.24470 * 24.86018 * 9 7 2 11 11 C 1.37620 * 119.74600 * 179.72204 * 10 9 7 12 12 C 1.38637 * 120.24480 * 0.53784 * 11 10 9 13 13 C 1.50700 * 119.74473 * 179.74139 * 12 11 10 14 14 O 1.45199 * 109.46998 * 270.02139 * 13 12 11 15 15 C 1.34234 * 116.99966 * 180.02562 * 14 13 12 16 16 O 1.20826 * 120.00069 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00009 * 179.97438 * 15 14 13 18 18 H 1.09000 * 109.54885 * 325.19338 * 17 15 14 19 19 C 1.53039 * 109.54861 * 85.47738 * 17 15 14 20 20 C 1.52585 * 109.98448 * 183.50375 * 19 17 15 21 21 C 1.52594 * 110.64455 * 290.01607 * 20 19 17 22 22 C 1.53030 * 109.98527 * 69.98660 * 21 20 19 23 23 S 1.81668 * 109.55126 * 204.99789 * 17 15 14 24 24 O 1.42098 * 108.66337 * 300.17497 * 23 17 15 25 25 O 1.42101 * 108.65949 * 71.42310 * 23 17 15 26 26 C 1.38627 * 120.50280 * 359.76261 * 12 11 10 27 27 C 1.37616 * 120.25120 * 359.95294 * 26 12 11 28 28 H 0.97004 * 119.99723 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.12574 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.87468 * 180.28157 * 11 10 9 31 31 H 1.08995 * 109.47549 * 30.02154 * 13 12 11 32 32 H 1.09006 * 109.46887 * 150.02423 * 13 12 11 33 33 H 1.09001 * 109.38873 * 303.66454 * 19 17 15 34 34 H 1.09002 * 109.38587 * 63.35108 * 19 17 15 35 35 H 1.09006 * 109.24456 * 169.71817 * 20 19 17 36 36 H 1.08993 * 109.21409 * 50.29669 * 20 19 17 37 37 H 1.08997 * 109.38184 * 309.82802 * 21 20 19 38 38 H 1.08999 * 109.38275 * 190.14780 * 21 20 19 39 39 H 1.08992 * 109.55137 * 176.49396 * 22 21 20 40 40 H 1.09004 * 109.55019 * 56.20903 * 22 21 20 41 41 H 1.08003 * 119.87752 * 179.97438 * 26 12 11 42 42 H 1.08005 * 120.13043 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3880 2.1052 1.3951 5 1 3.5870 1.4129 -0.5958 6 1 1.4943 2.6211 -0.7994 7 6 2.0079 -1.2120 0.0005 8 1 3.0507 -1.2333 0.2807 9 6 1.3496 -2.4085 -0.3657 10 6 0.2189 -2.3679 -1.2024 11 6 -0.4104 -3.5392 -1.5571 12 6 0.0589 -4.7550 -1.0843 13 6 -0.6424 -6.0303 -1.4751 14 8 -1.6816 -6.3278 -0.5057 15 6 -2.4052 -7.4399 -0.7098 16 8 -2.1780 -8.1412 -1.6671 17 6 -3.5009 -7.8136 0.2550 18 1 -3.2105 -7.5265 1.2656 19 6 -4.7933 -7.0917 -0.1332 20 6 -5.8865 -7.3946 0.8872 21 6 -6.3386 -8.8478 0.7758 22 6 -5.2311 -9.7797 1.2727 23 16 -3.7828 -9.6071 0.1897 24 8 -4.1601 -9.9602 -1.1340 25 8 -2.6780 -10.2633 0.7964 26 6 1.1682 -4.8065 -0.2544 27 6 1.8168 -3.6483 0.1085 28 1 -0.4850 0.8401 0.0004 29 1 -0.1506 -1.4215 -1.5688 30 1 -1.2757 -3.5108 -2.2028 31 1 -1.0895 -5.9114 -2.4620 32 1 0.0776 -6.8484 -1.4985 33 1 -4.6128 -6.0171 -0.1618 34 1 -5.1145 -7.4294 -1.1185 35 1 -6.7382 -6.7386 0.7068 36 1 -5.5006 -7.2145 1.8905 37 1 -6.5647 -9.0775 -0.2654 38 1 -7.2339 -8.9954 1.3798 39 1 -5.5838 -10.8107 1.2485 40 1 -4.9579 -9.5101 2.2929 41 1 1.5249 -5.7591 0.1084 42 1 2.6811 -3.6906 0.7548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273478728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:20 Heat of formation + Delta-G solvation = -146.584415 kcal Electronic energy + Delta-G solvation = -26609.781200 eV Core-core repulsion = 22646.567973 eV Total energy + Delta-G solvation = -3963.213227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46720 -37.92783 -37.62006 -36.91609 -36.38248 -36.11612 -33.92842 -32.61040 -30.82607 -29.42313 -28.68918 -27.18111 -24.72897 -23.79039 -21.51328 -21.37321 -21.12647 -20.11764 -19.05431 -17.93018 -17.43797 -17.40369 -16.62791 -16.27086 -16.09854 -15.80014 -15.38956 -15.06960 -14.50290 -14.35544 -14.07571 -13.87546 -13.79038 -13.37322 -12.93908 -12.53541 -12.51874 -12.33090 -12.24148 -12.20440 -12.08068 -11.98174 -11.85634 -11.76385 -11.41920 -11.21176 -11.05050 -11.03741 -10.88620 -10.69257 -10.51165 -10.36238 -10.27230 -9.75726 -9.52075 -9.26970 -7.61522 -7.50180 -6.91296 -4.51293 -0.42238 2.06523 2.26993 2.33162 2.79404 2.96258 2.99615 3.03792 3.13328 3.51458 3.62308 3.82123 4.04407 4.10425 4.28390 4.33615 4.45602 4.50177 4.76968 4.79661 4.96603 5.06057 5.29595 5.32845 5.49735 5.55428 5.59620 5.60565 5.61674 5.71092 5.98884 6.20189 6.26479 6.62030 6.82758 6.92909 7.13052 7.21345 7.46955 7.66397 7.75699 7.91103 7.95511 8.14431 8.49044 8.73760 8.81701 10.02408 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023143 B = 0.002350 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.563298 B =11909.983529 C =12506.549727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.259 1.259 6 H -0.274 1.274 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.170 4.170 11 C -0.075 4.075 12 C -0.238 4.238 13 C 0.132 3.868 14 O -0.336 6.336 15 C 0.484 3.516 16 O -0.501 6.501 17 C -0.583 4.583 18 H 0.166 0.834 19 C -0.103 4.103 20 C -0.139 4.139 21 C -0.114 4.114 22 C -0.606 4.606 23 S 2.438 3.562 24 O -0.906 6.906 25 O -0.929 6.929 26 C -0.063 4.063 27 C -0.229 4.229 28 H 0.283 0.717 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 -11.691 3.633 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.183 1.183 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.189 4.189 11 C -0.093 4.093 12 C -0.240 4.240 13 C 0.060 3.940 14 O -0.251 6.251 15 C 0.325 3.675 16 O -0.391 6.391 17 C -0.689 4.689 18 H 0.184 0.816 19 C -0.141 4.141 20 C -0.176 4.176 21 C -0.152 4.152 22 C -0.735 4.735 23 S 2.615 3.385 24 O -0.903 6.903 25 O -0.926 6.926 26 C -0.081 4.081 27 C -0.249 4.249 28 H 0.094 0.906 29 H 0.138 0.862 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.108 0.892 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.438 -12.315 2.879 18.453 hybrid contribution 0.013 1.396 0.647 1.539 sum -13.425 -10.918 3.526 17.660 Atomic orbital electron populations 1.69823 1.07698 1.29538 1.33880 1.25979 0.94777 1.01579 0.92090 0.86264 0.80791 0.80359 0.79182 1.19436 1.18284 1.19900 1.19690 0.98110 0.91167 1.39362 0.90110 1.17698 0.90766 0.92101 0.87807 1.21289 0.99682 0.96606 1.01362 1.20538 0.97676 0.92430 0.98675 1.18652 1.01404 0.91859 1.12066 1.21919 0.86195 0.96473 0.89409 1.86723 1.45280 1.39789 1.53346 1.21949 0.81033 0.80625 0.83850 1.90805 1.67133 1.51730 1.29395 1.30546 1.01716 1.28095 1.08553 0.81646 1.21349 0.88799 1.03298 1.00678 1.21723 0.99279 0.96467 1.00139 1.21352 0.97488 0.92909 1.03438 1.30322 1.17535 1.09510 1.16178 1.07944 0.77317 0.76315 0.76888 1.93597 1.83288 1.79499 1.33923 1.93606 1.50055 1.70221 1.78759 1.20418 0.95071 0.96755 0.95858 1.20979 1.04200 0.92695 1.07018 0.90621 0.86217 0.89286 0.91521 0.91563 0.88078 0.88977 0.88837 0.90104 0.89403 0.89083 0.84289 0.84521 0.89167 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.45 10.96 55.55 0.61 -18.84 16 2 C 0.07 1.80 5.15 -17.34 -0.09 1.71 16 3 Si 0.91 17.84 29.59 -169.99 -5.03 12.81 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 5 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.61 9.05 -37.74 -0.34 -11.95 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.12 3.08 5.57 -106.82 -0.60 2.48 16 10 C -0.17 -4.28 8.69 -38.87 -0.34 -4.62 16 11 C -0.07 -1.71 9.67 -39.66 -0.38 -2.09 16 12 C -0.24 -5.22 5.54 -104.33 -0.58 -5.79 16 13 C 0.13 2.52 5.58 36.01 0.20 2.72 16 14 O -0.34 -6.14 10.20 -39.27 -0.40 -6.55 16 15 C 0.48 7.92 7.09 36.01 0.26 8.17 16 16 O -0.50 -9.48 15.22 -24.22 -0.37 -9.85 16 17 C -0.58 -6.47 2.92 -27.86 -0.08 -6.55 16 18 H 0.17 1.35 8.14 -51.93 -0.42 0.93 16 19 C -0.10 -0.88 5.00 -26.92 -0.13 -1.01 16 20 C -0.14 -0.73 5.63 -27.15 -0.15 -0.88 16 21 C -0.11 -0.55 5.73 -26.92 -0.15 -0.71 16 22 C -0.61 -3.40 6.35 37.17 0.24 -3.16 16 23 S 2.44 27.34 4.32 -107.50 -0.46 26.88 16 24 O -0.91 -13.19 17.06 -64.34 -1.10 -14.28 16 25 O -0.93 -13.68 18.11 -57.82 -1.05 -14.72 16 26 C -0.06 -1.39 9.67 -39.66 -0.38 -1.78 16 27 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 28 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 29 H 0.12 3.09 6.18 -52.49 -0.32 2.76 16 30 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 31 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 32 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.80 8.01 -51.93 -0.42 0.38 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 37 H 0.09 0.45 8.01 -51.93 -0.42 0.03 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.14 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -33.64 363.87 -11.01 -44.64 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.77 Total: 3.78 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -2.92 Total: -29.35 kcal Atomic # 7 Polarization: -19.45 SS G_CDS: 0.61 Total: -18.84 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -2.91 Total: -45.40 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 16 Polarization: 27.34 SS G_CDS: -0.46 Total: 26.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.64 -11.01 -44.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273478728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.943 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds