Wall clock time and date at job start Tue Mar 31 2020 20:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86804 * 120.00252 * 2 1 4 4 H 1.48494 * 109.47232 * 85.18159 * 3 2 1 5 5 H 1.48500 * 109.47151 * 205.18653 * 3 2 1 6 6 H 1.48500 * 109.46807 * 325.18292 * 3 2 1 7 7 C 1.39946 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99999 * 197.42703 * 7 2 1 9 9 C 1.41393 * 119.99909 * 17.43021 * 7 2 1 10 10 C 1.40717 * 120.24470 * 24.86018 * 9 7 2 11 11 C 1.37620 * 119.74600 * 179.72204 * 10 9 7 12 12 C 1.38637 * 120.24480 * 0.53784 * 11 10 9 13 13 C 1.50700 * 119.74473 * 179.74139 * 12 11 10 14 14 O 1.45199 * 109.46998 * 270.02139 * 13 12 11 15 15 C 1.34234 * 116.99966 * 180.02562 * 14 13 12 16 16 O 1.20826 * 120.00069 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00009 * 179.97438 * 15 14 13 18 18 H 1.09000 * 109.54885 * 325.19338 * 17 15 14 19 19 C 1.53039 * 109.54861 * 85.47738 * 17 15 14 20 20 C 1.52585 * 109.98448 * 183.50375 * 19 17 15 21 21 C 1.52594 * 110.64455 * 290.01607 * 20 19 17 22 22 C 1.53030 * 109.98527 * 69.98660 * 21 20 19 23 23 S 1.81668 * 109.55126 * 204.99789 * 17 15 14 24 24 O 1.42098 * 108.66337 * 300.17497 * 23 17 15 25 25 O 1.42101 * 108.65949 * 71.42310 * 23 17 15 26 26 C 1.38627 * 120.50280 * 359.76261 * 12 11 10 27 27 C 1.37616 * 120.25120 * 359.95294 * 26 12 11 28 28 H 0.97004 * 119.99723 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.12574 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.87468 * 180.28157 * 11 10 9 31 31 H 1.08995 * 109.47549 * 30.02154 * 13 12 11 32 32 H 1.09006 * 109.46887 * 150.02423 * 13 12 11 33 33 H 1.09001 * 109.38873 * 303.66454 * 19 17 15 34 34 H 1.09002 * 109.38587 * 63.35108 * 19 17 15 35 35 H 1.09006 * 109.24456 * 169.71817 * 20 19 17 36 36 H 1.08993 * 109.21409 * 50.29669 * 20 19 17 37 37 H 1.08997 * 109.38184 * 309.82802 * 21 20 19 38 38 H 1.08999 * 109.38275 * 190.14780 * 21 20 19 39 39 H 1.08992 * 109.55137 * 176.49396 * 22 21 20 40 40 H 1.09004 * 109.55019 * 56.20903 * 22 21 20 41 41 H 1.08003 * 119.87752 * 179.97438 * 26 12 11 42 42 H 1.08005 * 120.13043 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3880 2.1052 1.3951 5 1 3.5870 1.4129 -0.5958 6 1 1.4943 2.6211 -0.7994 7 6 2.0079 -1.2120 0.0005 8 1 3.0507 -1.2333 0.2807 9 6 1.3496 -2.4085 -0.3657 10 6 0.2189 -2.3679 -1.2024 11 6 -0.4104 -3.5392 -1.5571 12 6 0.0589 -4.7550 -1.0843 13 6 -0.6424 -6.0303 -1.4751 14 8 -1.6816 -6.3278 -0.5057 15 6 -2.4052 -7.4399 -0.7098 16 8 -2.1780 -8.1412 -1.6671 17 6 -3.5009 -7.8136 0.2550 18 1 -3.2105 -7.5265 1.2656 19 6 -4.7933 -7.0917 -0.1332 20 6 -5.8865 -7.3946 0.8872 21 6 -6.3386 -8.8478 0.7758 22 6 -5.2311 -9.7797 1.2727 23 16 -3.7828 -9.6071 0.1897 24 8 -4.1601 -9.9602 -1.1340 25 8 -2.6780 -10.2633 0.7964 26 6 1.1682 -4.8065 -0.2544 27 6 1.8168 -3.6483 0.1085 28 1 -0.4850 0.8401 0.0004 29 1 -0.1506 -1.4215 -1.5688 30 1 -1.2757 -3.5108 -2.2028 31 1 -1.0895 -5.9114 -2.4620 32 1 0.0776 -6.8484 -1.4985 33 1 -4.6128 -6.0171 -0.1618 34 1 -5.1145 -7.4294 -1.1185 35 1 -6.7382 -6.7386 0.7068 36 1 -5.5006 -7.2145 1.8905 37 1 -6.5647 -9.0775 -0.2654 38 1 -7.2339 -8.9954 1.3798 39 1 -5.5838 -10.8107 1.2485 40 1 -4.9579 -9.5101 2.2929 41 1 1.5249 -5.7591 0.1084 42 1 2.6811 -3.6906 0.7548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273478728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:19 Heat of formation + Delta-G solvation = -167.577550 kcal Electronic energy + Delta-G solvation = -26610.691530 eV Core-core repulsion = 22646.567973 eV Total energy + Delta-G solvation = -3964.123557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82617 -39.58296 -38.52651 -37.82969 -37.63758 -37.13176 -35.72689 -33.40566 -32.52422 -31.27208 -29.53204 -28.71852 -25.88360 -25.04101 -23.00680 -22.67607 -21.97546 -21.87228 -19.90109 -19.30412 -19.12025 -18.47672 -17.71168 -17.36347 -17.29573 -17.07453 -16.67405 -16.06824 -15.72247 -15.67675 -15.37526 -14.92410 -14.75375 -14.42005 -14.25259 -14.04027 -13.88742 -13.80121 -13.56866 -13.31604 -13.20045 -12.92668 -12.88968 -12.75835 -12.71425 -12.64878 -12.40584 -12.15117 -11.95281 -11.84051 -11.81395 -11.59534 -11.55093 -11.33594 -11.11176 -11.04148 -9.47896 -9.37367 -8.71152 -6.42577 -1.22118 0.65037 0.80652 1.07455 1.35010 1.39523 1.52440 1.53916 1.66188 2.18439 2.60397 2.74445 2.86270 3.28727 3.42403 3.66162 3.72020 3.73677 3.86575 3.97959 4.01070 4.02237 4.25285 4.38762 4.43731 4.49406 4.50003 4.63970 4.82011 4.91000 4.97152 5.09315 5.11053 5.17949 5.23242 5.27399 5.34144 5.36013 5.61648 5.83545 6.02449 6.09703 6.28368 6.37187 6.60889 6.85549 6.93373 8.25593 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023143 B = 0.002350 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.563298 B =11909.983529 C =12506.549727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.491 4.491 8 H 0.080 0.920 9 C 0.089 3.911 10 C -0.192 4.192 11 C -0.078 4.078 12 C -0.234 4.234 13 C 0.133 3.867 14 O -0.345 6.345 15 C 0.477 3.523 16 O -0.533 6.533 17 C -0.580 4.580 18 H 0.196 0.804 19 C -0.106 4.106 20 C -0.136 4.136 21 C -0.120 4.120 22 C -0.562 4.562 23 S 2.414 3.586 24 O -0.955 6.955 25 O -0.978 6.978 26 C -0.066 4.066 27 C -0.244 4.244 28 H 0.291 0.709 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.128 0.872 39 H 0.166 0.834 40 H 0.173 0.827 41 H 0.116 0.884 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.128 -11.950 5.567 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.189 1.189 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.087 3.913 10 C -0.211 4.211 11 C -0.096 4.096 12 C -0.235 4.235 13 C 0.061 3.939 14 O -0.261 6.261 15 C 0.320 3.680 16 O -0.424 6.424 17 C -0.685 4.685 18 H 0.213 0.787 19 C -0.144 4.144 20 C -0.173 4.173 21 C -0.158 4.158 22 C -0.696 4.696 23 S 2.597 3.403 24 O -0.952 6.952 25 O -0.975 6.975 26 C -0.084 4.084 27 C -0.264 4.264 28 H 0.102 0.898 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.146 0.854 39 H 0.183 0.817 40 H 0.191 0.809 41 H 0.134 0.866 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.697 -12.586 4.783 20.681 hybrid contribution 0.573 1.328 0.063 1.448 sum -15.124 -11.258 4.846 19.467 Atomic orbital electron populations 1.69862 1.09081 1.30949 1.34197 1.26822 0.95531 1.04684 0.91032 0.85154 0.79169 0.75695 0.79507 1.18557 1.18264 1.18899 1.19939 0.98404 0.92316 1.41294 0.90171 1.18051 0.91538 0.93166 0.88588 1.21263 1.00506 0.96874 1.02472 1.20765 0.97988 0.92216 0.98659 1.18921 1.01197 0.92610 1.10759 1.21762 0.86830 0.95392 0.89906 1.86675 1.45383 1.41089 1.52971 1.22951 0.81314 0.79298 0.84429 1.90789 1.68085 1.52376 1.31172 1.30733 1.00752 1.28537 1.08478 0.78694 1.21502 0.88653 1.02464 1.01777 1.21797 0.98459 0.97207 0.99844 1.21535 0.98115 0.92127 1.03996 1.30079 1.12646 1.11716 1.15189 1.08438 0.78890 0.75806 0.77177 1.93535 1.84082 1.80041 1.37586 1.93541 1.53819 1.71105 1.79081 1.20714 0.94839 0.97331 0.95494 1.21177 1.04829 0.92849 1.07518 0.89770 0.87585 0.87441 0.90794 0.90802 0.88715 0.89911 0.86981 0.87954 0.89927 0.85423 0.81664 0.80881 0.86638 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.25 10.96 21.83 0.24 -41.01 16 2 C 0.04 1.74 5.15 85.26 0.44 2.18 16 3 Si 0.98 36.73 29.59 68.60 2.03 38.76 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 6 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 7 C -0.49 -25.86 9.05 23.46 0.21 -25.65 16 8 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 9 C 0.09 4.76 5.57 -21.29 -0.12 4.64 16 10 C -0.19 -9.98 8.69 22.73 0.20 -9.78 16 11 C -0.08 -3.61 9.67 22.22 0.21 -3.40 16 12 C -0.23 -10.23 5.54 -19.68 -0.11 -10.34 16 13 C 0.13 5.08 5.58 71.24 0.40 5.47 16 14 O -0.35 -12.57 10.20 -51.46 -0.53 -13.10 16 15 C 0.48 15.67 7.09 71.24 0.50 16.17 16 16 O -0.53 -20.81 15.22 27.20 0.41 -20.39 16 17 C -0.58 -12.14 2.92 29.86 0.09 -12.05 16 18 H 0.20 2.72 8.14 -2.39 -0.02 2.70 16 19 C -0.11 -1.61 5.00 30.47 0.15 -1.46 16 20 C -0.14 -0.83 5.63 30.32 0.17 -0.66 16 21 C -0.12 -0.57 5.73 30.47 0.17 -0.40 16 22 C -0.56 -3.71 6.35 71.99 0.46 -3.25 16 23 S 2.41 52.02 4.32 -56.49 -0.24 51.77 16 24 O -0.96 -28.48 17.06 -121.15 -2.07 -30.54 16 25 O -0.98 -28.94 18.11 -127.38 -2.31 -31.25 16 26 C -0.07 -2.92 9.67 22.22 0.21 -2.70 16 27 C -0.24 -11.95 9.80 22.73 0.22 -11.73 16 28 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 29 H 0.11 5.71 6.18 -2.91 -0.02 5.69 16 30 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.07 2.68 8.07 -2.39 -0.02 2.66 16 32 H 0.07 2.68 8.07 -2.38 -0.02 2.66 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.39 8.01 -2.39 -0.02 1.38 16 35 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 36 H 0.10 0.25 8.09 -2.39 -0.02 0.23 16 37 H 0.08 0.56 8.01 -2.39 -0.02 0.54 16 38 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.17 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.17 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 42 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -78.44 363.87 1.79 -76.65 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 1.03 Total: 22.05 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 3.22 Total: -52.94 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.24 Total: -41.01 kcal Atomic # 8 Polarization: -90.80 SS G_CDS: -4.48 Total: -95.28 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Atomic # 16 Polarization: 52.02 SS G_CDS: -0.24 Total: 51.77 kcal Total: -78.44 1.79 -76.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273478728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.925 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds