Wall clock time and date at job start Tue Mar 31 2020 21:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42100 * 108.57665 * 2 1 4 4 O 1.42096 * 108.57936 * 228.97202 * 2 1 3 5 5 C 1.81402 * 101.92114 * 114.48715 * 2 1 3 6 6 C 1.50695 * 112.90994 * 65.03304 * 5 2 1 7 7 O 1.20827 * 120.00135 * 215.81740 * 6 5 2 8 8 O 1.34225 * 120.00032 * 35.81925 * 6 5 2 9 9 C 1.45202 * 117.00521 * 179.97438 * 8 6 5 10 10 C 1.50690 * 109.47298 * 179.97438 * 9 8 6 11 11 C 1.38638 * 119.75321 * 269.72869 * 10 9 8 12 12 C 1.37620 * 120.25222 * 179.72289 * 11 10 9 13 13 C 1.40714 * 119.74008 * 0.57235 * 12 11 10 14 14 C 1.41399 * 120.23986 * 179.68343 * 13 12 11 15 15 H 1.07999 * 120.00143 * 27.02154 * 14 13 12 16 16 C 1.39945 * 119.99588 * 207.02248 * 14 13 12 17 17 N 1.30825 * 120.00312 * 13.06797 * 16 14 13 18 18 Si 1.86797 * 119.99904 * 193.06739 * 16 14 13 19 19 H 1.48501 * 109.47087 * 60.00018 * 18 16 14 20 20 H 1.48506 * 109.47514 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47359 * 300.00071 * 18 16 14 22 22 C 1.40715 * 119.51706 * 359.69948 * 13 12 11 23 23 C 1.37620 * 119.74172 * 0.02562 * 22 13 12 24 24 C 1.53791 * 113.61180 * 293.78205 * 5 2 1 25 25 C 1.53780 * 87.07663 * 220.01858 * 24 5 2 26 26 C 1.53773 * 87.08623 * 25.43589 * 25 24 5 27 27 H 1.09005 * 109.47320 * 310.63566 * 1 2 3 28 28 H 1.08998 * 109.47018 * 70.63423 * 1 2 3 29 29 H 1.09000 * 109.47167 * 190.63488 * 1 2 3 30 30 H 1.09000 * 109.46890 * 300.00323 * 9 8 6 31 31 H 1.08998 * 109.46472 * 59.99739 * 9 8 6 32 32 H 1.07999 * 119.87096 * 359.97438 * 11 10 9 33 33 H 1.07997 * 120.12664 * 180.27376 * 12 11 10 34 34 H 0.97002 * 120.00105 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.13115 * 179.97438 * 22 13 12 36 36 H 1.08002 * 119.87608 * 180.02562 * 23 22 13 37 37 H 1.08997 * 113.61157 * 105.47321 * 24 5 2 38 38 H 1.08994 * 113.61306 * 334.56977 * 24 5 2 39 39 H 1.09010 * 113.61001 * 139.98273 * 25 24 5 40 40 H 1.09000 * 113.61609 * 270.88222 * 25 24 5 41 41 H 1.09001 * 113.61728 * 89.11096 * 26 25 24 42 42 H 1.09002 * 113.61352 * 219.93402 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 1.7366 -2.1689 1.7262 7 8 1.3100 -2.5884 2.7760 8 8 1.8078 -2.9796 0.6588 9 6 1.3555 -4.3477 0.8385 10 6 1.5086 -5.1017 -0.4571 11 6 0.4631 -5.1248 -1.3673 12 6 0.5938 -5.8055 -2.5563 13 6 1.7900 -6.4897 -2.8410 14 6 1.9332 -7.1980 -4.0564 15 1 1.3730 -6.8936 -4.9281 16 6 2.8009 -8.2935 -4.1297 17 7 3.2812 -8.8220 -3.0335 18 14 3.2734 -9.0011 -5.7926 19 1 3.9476 -7.9547 -6.6024 20 1 4.1961 -10.1484 -5.5984 21 1 2.0518 -9.4633 -6.4991 22 6 2.8424 -6.4641 -1.9073 23 6 2.6916 -5.7722 -0.7273 24 6 1.7599 0.1394 2.8051 25 6 3.0745 -0.2786 3.4848 26 6 3.6393 -0.5100 2.0734 27 1 -0.3634 0.6693 0.7799 28 1 -0.3633 0.3408 -0.9695 29 1 -0.3633 -1.0100 0.1897 30 1 1.9533 -4.8292 1.6124 31 1 0.3071 -4.3474 1.1368 32 1 -0.4560 -4.6033 -1.1443 33 1 -0.2203 -5.8185 -3.2658 34 1 3.8830 -9.5812 -3.0844 35 1 3.7647 -6.9861 -2.1155 36 1 3.4981 -5.7508 -0.0093 37 1 0.8690 -0.2251 3.3163 38 1 1.7089 1.2023 2.5693 39 1 3.5645 0.5326 4.0235 40 1 2.9897 -1.1903 4.0761 41 1 4.1020 0.3754 1.6376 42 1 4.2666 -1.3979 1.9943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280984870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:37 Heat of formation + Delta-G solvation = -106.645959 kcal Electronic energy + Delta-G solvation = -27259.260128 eV Core-core repulsion = 23297.778763 eV Total energy + Delta-G solvation = -3961.481365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99154 -38.64225 -37.56541 -37.00817 -36.17003 -36.02881 -33.85305 -30.89250 -29.90514 -29.37078 -28.12679 -26.78019 -26.22071 -23.96464 -22.31465 -21.08530 -20.09529 -19.98467 -19.16308 -18.14021 -17.37320 -16.84993 -16.68397 -16.31683 -15.93085 -15.65416 -15.39733 -14.96144 -14.29168 -13.90594 -13.86309 -13.53032 -13.38783 -13.17880 -13.04568 -12.91128 -12.63927 -12.49075 -12.28849 -12.18056 -12.07062 -12.01850 -11.58532 -11.42411 -11.25720 -11.19953 -11.12991 -10.99548 -10.72849 -10.63302 -10.47235 -10.28080 -10.16323 -9.71281 -9.44452 -9.24126 -7.54176 -7.41767 -6.81388 -4.45899 -0.27236 1.96127 2.20574 2.50606 2.85232 3.02527 3.04282 3.06679 3.19669 3.32926 3.53767 3.88231 3.88605 4.08149 4.28600 4.46194 4.61154 4.68837 4.74233 5.05133 5.09354 5.26402 5.44607 5.45714 5.50138 5.52545 5.57306 5.58012 5.65912 5.89889 6.00568 6.22199 6.31243 6.58888 6.87998 6.99855 7.18818 7.28031 7.53433 7.68935 7.77790 7.97855 8.00614 8.21072 8.56118 8.80831 8.88237 10.11971 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.002822 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.984723 B = 9920.346444 C =10356.557669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.432 3.568 3 O -0.932 6.932 4 O -0.893 6.893 5 C -0.590 4.590 6 C 0.491 3.509 7 O -0.494 6.494 8 O -0.333 6.333 9 C 0.135 3.865 10 C -0.233 4.233 11 C -0.063 4.063 12 C -0.227 4.227 13 C 0.120 3.880 14 C -0.456 4.456 15 H 0.080 0.920 16 C 0.074 3.926 17 N -0.793 5.793 18 Si 0.913 3.087 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.165 4.165 23 C -0.074 4.074 24 C -0.099 4.099 25 C -0.125 4.125 26 C -0.094 4.094 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.282 0.718 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 15.348 10.016 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.609 3.391 3 O -0.929 6.929 4 O -0.890 6.890 5 C -0.677 4.677 6 C 0.331 3.669 7 O -0.382 6.382 8 O -0.249 6.249 9 C 0.064 3.936 10 C -0.234 4.234 11 C -0.082 4.082 12 C -0.246 4.246 13 C 0.118 3.882 14 C -0.485 4.485 15 H 0.098 0.902 16 C -0.145 4.145 17 N -0.418 5.418 18 Si 0.737 3.263 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.184 4.184 23 C -0.093 4.093 24 C -0.137 4.137 25 C -0.163 4.163 26 C -0.132 4.132 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.570 15.225 9.752 18.148 hybrid contribution -0.441 -0.892 -0.050 0.996 sum -2.011 14.333 9.701 17.424 Atomic orbital electron populations 1.30234 1.26210 1.11884 1.11974 1.07894 0.79020 0.75748 0.76392 1.93594 1.79716 1.33898 1.85722 1.93722 1.78365 1.65910 1.51046 1.31246 1.10425 1.01652 1.24386 1.21534 0.75712 0.86278 0.83403 1.90617 1.42155 1.75724 1.29687 1.86878 1.75977 1.25175 1.36912 1.21890 0.98487 0.75655 0.97612 1.18602 0.98086 1.08968 0.97755 1.20355 0.96273 0.97581 0.93969 1.20970 0.98001 1.08008 0.97658 1.17697 0.89722 0.88426 0.92391 1.19653 1.21188 1.10443 0.97244 0.90231 1.25957 0.93952 0.96229 0.98315 1.69791 1.24226 1.18719 1.29030 0.86288 0.79275 0.78724 0.81993 1.18701 1.20271 1.18953 1.21344 0.99870 1.02555 0.94647 1.20539 0.94882 0.96993 0.96881 1.22735 1.01131 0.97815 0.92034 1.22811 0.95002 1.02875 0.95634 1.22666 0.88865 1.04343 0.97339 0.85276 0.84618 0.85195 0.91590 0.91721 0.89351 0.88651 0.90667 0.86011 0.89303 0.88448 0.87251 0.89962 0.88698 0.87069 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.53 10.41 101.05 1.05 -4.48 16 2 S 2.43 28.70 4.80 -107.50 -0.52 28.19 16 3 O -0.93 -11.88 17.46 -57.83 -1.01 -12.89 16 4 O -0.89 -15.04 16.86 -64.63 -1.09 -16.13 16 5 C -0.59 -6.58 1.10 -90.95 -0.10 -6.68 16 6 C 0.49 7.14 6.64 36.00 0.24 7.38 16 7 O -0.49 -7.76 15.11 -18.75 -0.28 -8.04 16 8 O -0.33 -5.86 8.76 -44.96 -0.39 -6.26 16 9 C 0.13 2.48 5.58 36.00 0.20 2.68 16 10 C -0.23 -5.13 5.54 -104.33 -0.58 -5.71 16 11 C -0.06 -1.41 9.67 -39.66 -0.38 -1.80 16 12 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 13 C 0.12 3.19 5.56 -106.82 -0.59 2.59 16 14 C -0.46 -11.94 9.07 -37.74 -0.34 -12.28 16 15 H 0.08 1.99 7.88 -52.49 -0.41 1.57 16 16 C 0.07 1.81 5.22 -17.34 -0.09 1.72 16 17 N -0.79 -20.11 10.85 55.55 0.60 -19.51 16 18 Si 0.91 18.39 29.58 -169.99 -5.03 13.36 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 C -0.16 -4.27 8.67 -38.87 -0.34 -4.61 16 23 C -0.07 -1.75 9.67 -39.66 -0.38 -2.13 16 24 C -0.10 -0.81 6.90 -25.91 -0.18 -0.99 16 25 C -0.13 -1.04 7.69 -25.92 -0.20 -1.24 16 26 C -0.09 -0.91 7.22 -25.92 -0.19 -1.10 16 27 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.13 1.14 7.95 -51.92 -0.41 0.72 16 30 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.28 6.52 8.30 -40.82 -0.34 6.19 16 35 H 0.12 3.24 6.17 -52.49 -0.32 2.92 16 36 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.10 0.77 7.64 -51.93 -0.40 0.37 16 38 H 0.11 0.64 7.82 -51.93 -0.41 0.23 16 39 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.09 0.91 7.62 -51.93 -0.40 0.51 16 41 H 0.11 0.89 7.86 -51.93 -0.41 0.49 16 42 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -32.59 367.54 -10.13 -42.72 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.69 Total: 5.55 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: -2.26 Total: -32.53 kcal Atomic # 7 Polarization: -20.11 SS G_CDS: 0.60 Total: -19.51 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -2.78 Total: -43.31 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: 28.70 SS G_CDS: -0.52 Total: 28.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.59 -10.13 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280984870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.930 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds