Wall clock time and date at job start Tue Mar 31 2020 21:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42100 * 108.57665 * 2 1 4 4 O 1.42096 * 108.57936 * 228.97202 * 2 1 3 5 5 C 1.81402 * 101.92114 * 114.48715 * 2 1 3 6 6 C 1.50695 * 112.90994 * 65.03304 * 5 2 1 7 7 O 1.20827 * 120.00135 * 215.81740 * 6 5 2 8 8 O 1.34225 * 120.00032 * 35.81925 * 6 5 2 9 9 C 1.45202 * 117.00521 * 179.97438 * 8 6 5 10 10 C 1.50690 * 109.47298 * 179.97438 * 9 8 6 11 11 C 1.38638 * 119.75321 * 269.72869 * 10 9 8 12 12 C 1.37620 * 120.25222 * 179.72289 * 11 10 9 13 13 C 1.40714 * 119.74008 * 0.57235 * 12 11 10 14 14 C 1.41399 * 120.23986 * 179.68343 * 13 12 11 15 15 H 1.07999 * 120.00143 * 27.02154 * 14 13 12 16 16 C 1.39945 * 119.99588 * 207.02248 * 14 13 12 17 17 N 1.30825 * 120.00312 * 13.06797 * 16 14 13 18 18 Si 1.86797 * 119.99904 * 193.06739 * 16 14 13 19 19 H 1.48501 * 109.47087 * 60.00018 * 18 16 14 20 20 H 1.48506 * 109.47514 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47359 * 300.00071 * 18 16 14 22 22 C 1.40715 * 119.51706 * 359.69948 * 13 12 11 23 23 C 1.37620 * 119.74172 * 0.02562 * 22 13 12 24 24 C 1.53791 * 113.61180 * 293.78205 * 5 2 1 25 25 C 1.53780 * 87.07663 * 220.01858 * 24 5 2 26 26 C 1.53773 * 87.08623 * 25.43589 * 25 24 5 27 27 H 1.09005 * 109.47320 * 310.63566 * 1 2 3 28 28 H 1.08998 * 109.47018 * 70.63423 * 1 2 3 29 29 H 1.09000 * 109.47167 * 190.63488 * 1 2 3 30 30 H 1.09000 * 109.46890 * 300.00323 * 9 8 6 31 31 H 1.08998 * 109.46472 * 59.99739 * 9 8 6 32 32 H 1.07999 * 119.87096 * 359.97438 * 11 10 9 33 33 H 1.07997 * 120.12664 * 180.27376 * 12 11 10 34 34 H 0.97002 * 120.00105 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.13115 * 179.97438 * 22 13 12 36 36 H 1.08002 * 119.87608 * 180.02562 * 23 22 13 37 37 H 1.08997 * 113.61157 * 105.47321 * 24 5 2 38 38 H 1.08994 * 113.61306 * 334.56977 * 24 5 2 39 39 H 1.09010 * 113.61001 * 139.98273 * 25 24 5 40 40 H 1.09000 * 113.61609 * 270.88222 * 25 24 5 41 41 H 1.09001 * 113.61728 * 89.11096 * 26 25 24 42 42 H 1.09002 * 113.61352 * 219.93402 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 1.7366 -2.1689 1.7262 7 8 1.3100 -2.5884 2.7760 8 8 1.8078 -2.9796 0.6588 9 6 1.3555 -4.3477 0.8385 10 6 1.5086 -5.1017 -0.4571 11 6 0.4631 -5.1248 -1.3673 12 6 0.5938 -5.8055 -2.5563 13 6 1.7900 -6.4897 -2.8410 14 6 1.9332 -7.1980 -4.0564 15 1 1.3730 -6.8936 -4.9281 16 6 2.8009 -8.2935 -4.1297 17 7 3.2812 -8.8220 -3.0335 18 14 3.2734 -9.0011 -5.7926 19 1 3.9476 -7.9547 -6.6024 20 1 4.1961 -10.1484 -5.5984 21 1 2.0518 -9.4633 -6.4991 22 6 2.8424 -6.4641 -1.9073 23 6 2.6916 -5.7722 -0.7273 24 6 1.7599 0.1394 2.8051 25 6 3.0745 -0.2786 3.4848 26 6 3.6393 -0.5100 2.0734 27 1 -0.3634 0.6693 0.7799 28 1 -0.3633 0.3408 -0.9695 29 1 -0.3633 -1.0100 0.1897 30 1 1.9533 -4.8292 1.6124 31 1 0.3071 -4.3474 1.1368 32 1 -0.4560 -4.6033 -1.1443 33 1 -0.2203 -5.8185 -3.2658 34 1 3.8830 -9.5812 -3.0844 35 1 3.7647 -6.9861 -2.1155 36 1 3.4981 -5.7508 -0.0093 37 1 0.8690 -0.2251 3.3163 38 1 1.7089 1.2023 2.5693 39 1 3.5645 0.5326 4.0235 40 1 2.9897 -1.1903 4.0761 41 1 4.1020 0.3754 1.6376 42 1 4.2666 -1.3979 1.9943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280984870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:36 Heat of formation + Delta-G solvation = -126.179664 kcal Electronic energy + Delta-G solvation = -27260.107173 eV Core-core repulsion = 23297.778763 eV Total energy + Delta-G solvation = -3962.328410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.09918 -39.83891 -39.14091 -38.02141 -37.37291 -37.13014 -35.67805 -32.64475 -31.24115 -30.63504 -29.43779 -28.11362 -26.91080 -25.60369 -23.42876 -22.95731 -21.86089 -20.85793 -20.22646 -19.26854 -19.10884 -18.07564 -17.72152 -17.27857 -17.18664 -16.94048 -16.65630 -16.20645 -15.74523 -15.52467 -15.28338 -14.57864 -14.31064 -14.20333 -14.05110 -14.03842 -13.86823 -13.66246 -13.58385 -13.46725 -13.29910 -13.21123 -13.09827 -12.99894 -12.80065 -12.40883 -12.33045 -12.15772 -12.04902 -11.77742 -11.70241 -11.61579 -11.42650 -11.28987 -11.09342 -11.04965 -9.42992 -9.30846 -8.65288 -6.41155 -1.15197 0.66491 0.85481 1.11425 1.36266 1.39532 1.50153 1.60393 1.70062 2.19716 2.47420 2.63638 2.75888 3.07065 3.25114 3.53144 3.61710 3.76960 3.99024 4.02034 4.07950 4.09192 4.19912 4.45680 4.46713 4.50477 4.54423 4.57998 4.76302 4.82581 4.86546 4.99477 5.00142 5.11760 5.21832 5.30030 5.36625 5.40264 5.65534 5.86802 6.06002 6.12600 6.32110 6.50011 6.64720 6.88967 6.97143 8.30686 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.002822 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.984723 B = 9920.346444 C =10356.557669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.428 3.572 3 O -0.946 6.946 4 O -0.957 6.957 5 C -0.590 4.590 6 C 0.493 3.507 7 O -0.503 6.503 8 O -0.351 6.351 9 C 0.138 3.862 10 C -0.228 4.228 11 C -0.066 4.066 12 C -0.243 4.243 13 C 0.087 3.913 14 C -0.496 4.496 15 H 0.079 0.921 16 C 0.032 3.968 17 N -0.825 5.825 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.258 1.258 22 C -0.191 4.191 23 C -0.084 4.084 24 C -0.090 4.090 25 C -0.122 4.122 26 C -0.104 4.104 27 H 0.167 0.833 28 H 0.150 0.850 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.289 0.711 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.128 0.872 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 17.338 11.353 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.611 3.389 3 O -0.943 6.943 4 O -0.954 6.954 5 C -0.678 4.678 6 C 0.335 3.665 7 O -0.392 6.392 8 O -0.267 6.267 9 C 0.066 3.934 10 C -0.229 4.229 11 C -0.084 4.084 12 C -0.262 4.262 13 C 0.085 3.915 14 C -0.525 4.525 15 H 0.097 0.903 16 C -0.182 4.182 17 N -0.451 5.451 18 Si 0.807 3.193 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.210 4.210 23 C -0.102 4.102 24 C -0.128 4.128 25 C -0.160 4.160 26 C -0.142 4.142 27 H 0.185 0.815 28 H 0.168 0.832 29 H 0.149 0.851 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.158 0.842 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.146 0.854 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.751 17.234 11.101 20.684 hybrid contribution -0.133 -1.360 -0.257 1.391 sum -2.884 15.874 10.844 19.439 Atomic orbital electron populations 1.30132 1.21599 1.13176 1.14445 1.07670 0.80698 0.74690 0.75799 1.93569 1.81073 1.33827 1.85877 1.93656 1.80690 1.67239 1.53823 1.31294 1.11946 0.99470 1.25100 1.21978 0.75079 0.87106 0.82375 1.90614 1.42597 1.76217 1.29733 1.86828 1.76537 1.24812 1.38543 1.21733 1.00041 0.76189 0.95440 1.19001 0.97042 1.07987 0.98859 1.20746 0.97721 0.96879 0.93055 1.21217 0.97717 1.08339 0.98944 1.18061 0.90751 0.89589 0.93104 1.19912 1.23184 1.11905 0.97466 0.90263 1.26818 0.93251 0.96021 1.02151 1.69851 1.24783 1.19326 1.31109 0.85190 0.79164 0.78037 0.76950 1.18560 1.19100 1.18163 1.21312 0.99539 1.04042 0.96106 1.20806 0.96244 0.96695 0.96477 1.22954 1.01221 0.98769 0.89852 1.22802 0.95240 1.03205 0.94729 1.22876 0.88000 1.04666 0.98664 0.81455 0.83186 0.85060 0.90967 0.89529 0.85789 0.87719 0.90019 0.87759 0.87724 0.87718 0.84236 0.87205 0.90245 0.85382 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -8.70 10.41 113.37 1.18 -7.52 16 2 S 2.43 53.66 4.80 -56.49 -0.27 53.38 16 3 O -0.95 -22.35 17.46 -127.37 -2.22 -24.58 16 4 O -0.96 -32.61 16.86 -120.87 -2.04 -34.65 16 5 C -0.59 -11.94 1.10 -11.01 -0.01 -11.95 16 6 C 0.49 13.52 6.64 71.23 0.47 14.00 16 7 O -0.50 -14.75 15.11 21.96 0.33 -14.42 16 8 O -0.35 -11.98 8.76 -45.90 -0.40 -12.38 16 9 C 0.14 4.86 5.58 71.23 0.40 5.26 16 10 C -0.23 -9.96 5.54 -19.68 -0.11 -10.07 16 11 C -0.07 -2.90 9.67 22.22 0.21 -2.68 16 12 C -0.24 -12.05 9.80 22.73 0.22 -11.83 16 13 C 0.09 4.82 5.56 -21.29 -0.12 4.71 16 14 C -0.50 -27.05 9.07 23.46 0.21 -26.84 16 15 H 0.08 4.13 7.88 -2.91 -0.02 4.11 16 16 C 0.03 1.65 5.22 85.26 0.45 2.09 16 17 N -0.82 -43.45 10.85 21.83 0.24 -43.21 16 18 Si 0.99 38.41 29.58 68.60 2.03 40.44 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 22 C -0.19 -10.35 8.67 22.73 0.20 -10.15 16 23 C -0.08 -4.03 9.67 22.22 0.21 -3.82 16 24 C -0.09 -1.13 6.90 31.12 0.21 -0.92 16 25 C -0.12 -1.68 7.69 31.12 0.24 -1.44 16 26 C -0.10 -1.84 7.22 31.12 0.22 -1.62 16 27 H 0.17 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.13 1.87 7.95 -2.39 -0.02 1.85 16 30 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 31 H 0.09 2.67 8.07 -2.39 -0.02 2.65 16 32 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 33 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 34 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 35 H 0.10 5.91 6.17 -2.91 -0.02 5.89 16 36 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 37 H 0.10 1.23 7.64 -2.39 -0.02 1.21 16 38 H 0.14 0.96 7.82 -2.39 -0.02 0.94 16 39 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.08 1.36 7.62 -2.39 -0.02 1.34 16 41 H 0.13 1.82 7.86 -2.39 -0.02 1.81 16 42 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -74.06 367.54 2.69 -71.37 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 1.03 Total: 26.82 kcal Atomic # 6 Polarization: -66.77 SS G_CDS: 4.00 Total: -62.77 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.24 Total: -43.21 kcal Atomic # 8 Polarization: -81.70 SS G_CDS: -4.33 Total: -86.03 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Atomic # 16 Polarization: 53.66 SS G_CDS: -0.27 Total: 53.38 kcal Total: -74.06 2.69 -71.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280984870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.806 kcal (2) G-P(sol) polarization free energy of solvation -74.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds