Wall clock time and date at job start Tue Mar 31 2020 21:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46598 * 158.52738 * 3 2 1 5 5 C 1.36941 * 119.99563 * 264.04562 * 4 3 2 6 6 H 1.08002 * 119.99843 * 201.23692 * 5 4 3 7 7 C 1.38804 * 120.00196 * 21.22916 * 5 4 3 8 8 N 1.31620 * 119.99928 * 11.99161 * 7 5 4 9 9 Si 1.86799 * 120.00207 * 191.98010 * 7 5 4 10 10 H 1.48502 * 109.46948 * 84.98802 * 9 7 5 11 11 H 1.48505 * 109.47227 * 204.98493 * 9 7 5 12 12 H 1.48498 * 109.47518 * 324.98662 * 9 7 5 13 13 C 1.46502 * 120.00356 * 84.04843 * 4 3 2 14 14 C 1.50694 * 109.46731 * 269.99781 * 13 4 3 15 15 O 1.21280 * 120.00485 * 359.97438 * 14 13 4 16 16 N 1.34783 * 119.99931 * 179.97438 * 14 13 4 17 17 C 1.46507 * 119.99681 * 0.02562 * 16 14 13 18 18 C 1.46491 * 120.00147 * 179.97438 * 16 14 13 19 19 C 1.50700 * 109.47517 * 270.00075 * 18 16 14 20 20 C 1.38454 * 120.01766 * 89.99735 * 19 18 16 21 21 F 1.35094 * 120.02190 * 0.02562 * 20 19 18 22 22 C 1.38448 * 119.96049 * 179.97438 * 20 19 18 23 23 C 1.38227 * 120.00350 * 0.02562 * 22 20 19 24 24 C 1.38201 * 120.03486 * 359.97438 * 23 22 20 25 25 C 1.38294 * 120.01834 * 269.72673 * 19 18 16 26 26 Cl 1.73596 * 120.00150 * 359.97438 * 25 19 18 27 27 H 4.40635 * 5.51468 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47918 * 38.52392 * 3 2 1 29 29 H 1.09001 * 109.47083 * 278.51998 * 3 2 1 30 30 H 0.97001 * 120.00218 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.47036 * 149.99961 * 13 4 3 32 32 H 1.08998 * 109.47093 * 29.99581 * 13 4 3 33 33 H 1.08997 * 109.46724 * 270.00173 * 17 16 14 34 34 H 1.09000 * 109.46759 * 29.99781 * 17 16 14 35 35 H 1.08999 * 109.46723 * 149.99968 * 17 16 14 36 36 H 1.09000 * 109.47569 * 30.00398 * 18 16 14 37 37 H 1.09004 * 109.47238 * 150.00181 * 18 16 14 38 38 H 1.08005 * 120.00017 * 179.97438 * 22 20 19 39 39 H 1.08000 * 119.98395 * 180.02562 * 23 22 20 40 40 H 1.07998 * 119.98338 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.2863 -0.5056 5 6 3.4777 1.4172 -1.8246 6 1 4.1397 2.2126 -2.1336 7 6 2.9757 0.5275 -2.7644 8 7 1.9949 -0.2882 -2.4404 9 14 3.6920 0.4881 -4.4892 10 1 4.8900 -0.3892 -4.5077 11 1 2.6765 -0.0408 -5.4350 12 1 4.0788 1.8629 -4.8962 13 6 3.2532 2.4318 0.3998 14 6 1.9617 3.2083 0.4006 15 8 1.0330 2.8413 -0.2876 16 7 1.8386 4.3107 1.1663 17 6 2.9607 4.7543 1.9972 18 6 0.5833 5.0658 1.1667 19 6 0.6328 6.1234 0.0942 20 6 0.1889 5.8340 -1.1849 21 9 -0.2894 4.6036 -1.4722 22 6 0.2344 6.8066 -2.1691 23 6 0.7233 8.0655 -1.8747 24 6 1.1664 8.3544 -0.5979 25 6 1.1165 7.3851 0.3885 26 17 1.6662 7.7513 1.9939 27 1 -1.0502 -0.0003 0.0003 28 1 3.0098 -0.8031 -0.6400 29 1 3.0094 -0.1514 1.0163 30 1 1.6444 -0.9101 -3.0970 31 1 4.0649 3.0772 0.0639 32 1 3.4646 2.0771 1.4085 33 1 2.8926 4.2866 2.9794 34 1 3.8994 4.4682 1.5228 35 1 2.9248 5.8381 2.1076 36 1 -0.2482 4.3887 0.9712 37 1 0.4449 5.5400 2.1384 38 1 -0.1114 6.5814 -3.1672 39 1 0.7582 8.8241 -2.6426 40 1 1.5479 9.3384 -0.3687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281395972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:28 Heat of formation + Delta-G solvation = 46.269237 kcal Electronic energy + Delta-G solvation = -27764.812822 eV Core-core repulsion = 23716.751097 eV Total energy + Delta-G solvation = -4048.061725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.51267 -39.62942 -38.59103 -36.67090 -35.80094 -34.72159 -32.09811 -31.32205 -30.94057 -30.46219 -27.77575 -26.72677 -25.87509 -25.03789 -22.86927 -22.24010 -21.29858 -18.58230 -17.61812 -17.33112 -16.88403 -16.42324 -16.05534 -15.89242 -15.71096 -15.13914 -14.84653 -14.72473 -14.54090 -13.69832 -13.51010 -13.45390 -13.22928 -13.05004 -12.90230 -12.51909 -12.32970 -12.24174 -12.00467 -11.58037 -11.44563 -11.32783 -11.23674 -11.10480 -10.82596 -10.80137 -10.66978 -10.19618 -9.97911 -9.17210 -8.88422 -8.72582 -8.67244 -8.51043 -8.14689 -8.09481 -6.87078 -5.66755 -3.16317 0.87725 1.01087 1.85049 3.23933 3.40942 3.46665 3.48782 3.66428 3.75105 4.34219 4.40893 4.57835 4.61438 4.66527 4.75758 4.80202 5.09517 5.26483 5.35477 5.40730 5.48727 5.64489 5.72112 5.77925 5.85099 5.86199 5.92560 5.98124 6.08201 6.08270 6.15571 6.20273 6.32321 6.70123 6.82051 6.99960 7.38162 7.66877 7.78434 8.03694 8.37900 9.15265 9.24765 9.54333 9.81921 10.27037 11.34739 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.004338 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.238437 B = 6452.539719 C = 7206.906961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.088 4.088 3 C 0.272 3.728 4 N -0.559 5.559 5 C -0.262 4.262 6 H 0.072 0.928 7 C 0.011 3.989 8 N -0.882 5.882 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.132 3.868 14 C 0.462 3.538 15 O -0.474 6.474 16 N -0.628 5.628 17 C 0.076 3.924 18 C 0.153 3.847 19 C -0.132 4.132 20 C 0.142 3.858 21 F -0.101 7.101 22 C -0.157 4.157 23 C -0.080 4.080 24 C -0.132 4.132 25 C 0.000 4.000 26 Cl -0.059 7.059 27 H 0.182 0.818 28 H 0.102 0.898 29 H 0.030 0.970 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 16.970 8.634 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.091 4.091 3 C 0.148 3.852 4 N -0.277 5.277 5 C -0.391 4.391 6 H 0.089 0.911 7 C -0.189 4.189 8 N -0.525 5.525 9 Si 0.735 3.265 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.207 1.207 13 C 0.001 3.999 14 C 0.247 3.753 15 O -0.343 6.343 16 N -0.367 5.367 17 C -0.068 4.068 18 C 0.029 3.971 19 C -0.135 4.135 20 C 0.122 3.878 21 F -0.079 7.079 22 C -0.176 4.176 23 C -0.098 4.098 24 C -0.151 4.151 25 C -0.028 4.028 26 Cl -0.030 7.030 27 H 0.199 0.801 28 H 0.119 0.881 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.594 16.499 8.223 18.444 hybrid contribution -0.244 0.161 -1.079 1.118 sum -0.838 16.660 7.144 18.146 Atomic orbital electron populations 1.23904 0.95070 1.04242 1.08136 1.23876 0.94925 0.96582 0.93702 1.17870 0.83259 0.89284 0.94824 1.44117 1.72985 1.03695 1.06873 1.19123 1.22433 1.14537 0.83036 0.91060 1.25054 0.96192 0.99977 0.97692 1.70046 1.24604 1.24176 1.33628 0.86278 0.78035 0.77650 0.84492 1.21319 1.21778 1.20745 1.21098 0.92972 0.90330 0.95530 1.23525 0.93257 0.79681 0.78824 1.90797 1.39974 1.65734 1.37765 1.48518 1.13126 1.27920 1.47172 1.21868 0.89776 1.00585 0.94575 1.20092 0.90075 0.91653 0.95244 1.20281 1.01941 0.95267 0.96019 1.17507 0.96289 0.81493 0.92559 1.91740 1.84315 1.38429 1.93419 1.21352 1.03038 0.93389 0.99858 1.20905 0.96780 0.96056 0.96078 1.20995 1.02511 0.99249 0.92327 1.20500 1.01264 0.94140 0.86868 1.98344 1.87843 1.94072 1.22780 0.80078 0.88071 0.95249 0.93563 0.90857 0.91558 0.93374 0.91181 0.91400 0.88881 0.89794 0.84214 0.84315 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.54 18.77 29.55 0.55 -6.98 16 2 C -0.09 -2.31 9.92 -37.13 -0.37 -2.68 16 3 C 0.27 6.72 5.45 -6.83 -0.04 6.68 16 4 N -0.56 -13.96 2.09 -177.95 -0.37 -14.34 16 5 C -0.26 -7.18 9.69 -15.06 -0.15 -7.33 16 6 H 0.07 1.92 7.84 -52.49 -0.41 1.50 16 7 C 0.01 0.30 5.07 -17.43 -0.09 0.22 16 8 N -0.88 -26.01 9.08 55.49 0.50 -25.51 16 9 Si 0.91 22.21 29.57 -169.99 -5.03 17.18 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.13 2.69 4.73 -5.20 -0.02 2.67 16 14 C 0.46 9.73 7.65 -10.99 -0.08 9.65 16 15 O -0.47 -12.16 11.74 5.56 0.07 -12.09 16 16 N -0.63 -10.34 2.86 -182.96 -0.52 -10.86 16 17 C 0.08 0.93 10.24 59.85 0.61 1.55 16 18 C 0.15 2.36 5.01 -5.20 -0.03 2.33 16 19 C -0.13 -1.96 5.47 -104.52 -0.57 -2.53 16 20 C 0.14 2.35 7.24 -39.42 -0.29 2.06 16 21 F -0.10 -2.11 14.20 2.25 0.03 -2.08 16 22 C -0.16 -2.08 10.03 -39.51 -0.40 -2.48 16 23 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 24 C -0.13 -1.37 9.83 -39.54 -0.39 -1.75 16 25 C 0.00 0.00 6.31 -39.50 -0.25 -0.25 16 26 Cl -0.06 -0.61 24.56 -51.86 -1.27 -1.89 16 27 H 0.18 4.12 7.80 -54.08 -0.42 3.70 16 28 H 0.10 2.69 6.41 -51.93 -0.33 2.35 16 29 H 0.03 0.63 7.98 -51.93 -0.41 0.21 16 30 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.07 1.38 7.29 -51.93 -0.38 1.00 16 32 H 0.07 1.16 7.92 -51.93 -0.41 0.75 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 35 H 0.07 0.75 5.02 -51.93 -0.26 0.49 16 36 H 0.09 1.66 6.92 -51.93 -0.36 1.31 16 37 H 0.08 1.07 6.82 -51.93 -0.35 0.72 16 38 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -34.38 351.94 -7.69 -42.07 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.51 Total: 2.29 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.90 Total: -0.08 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.39 Total: -50.71 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.03 Total: -2.08 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.27 Total: -1.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.38 -7.69 -42.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281395972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.338 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds