Wall clock time and date at job start Tue Mar 31 2020 21:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46598 * 158.52738 * 3 2 1 5 5 C 1.36941 * 119.99563 * 264.04562 * 4 3 2 6 6 H 1.08002 * 119.99843 * 201.23692 * 5 4 3 7 7 C 1.38804 * 120.00196 * 21.22916 * 5 4 3 8 8 N 1.31620 * 119.99928 * 11.99161 * 7 5 4 9 9 Si 1.86799 * 120.00207 * 191.98010 * 7 5 4 10 10 H 1.48502 * 109.46948 * 84.98802 * 9 7 5 11 11 H 1.48505 * 109.47227 * 204.98493 * 9 7 5 12 12 H 1.48498 * 109.47518 * 324.98662 * 9 7 5 13 13 C 1.46502 * 120.00356 * 84.04843 * 4 3 2 14 14 C 1.50694 * 109.46731 * 269.99781 * 13 4 3 15 15 O 1.21280 * 120.00485 * 359.97438 * 14 13 4 16 16 N 1.34783 * 119.99931 * 179.97438 * 14 13 4 17 17 C 1.46507 * 119.99681 * 0.02562 * 16 14 13 18 18 C 1.46491 * 120.00147 * 179.97438 * 16 14 13 19 19 C 1.50700 * 109.47517 * 270.00075 * 18 16 14 20 20 C 1.38454 * 120.01766 * 89.99735 * 19 18 16 21 21 F 1.35094 * 120.02190 * 0.02562 * 20 19 18 22 22 C 1.38448 * 119.96049 * 179.97438 * 20 19 18 23 23 C 1.38227 * 120.00350 * 0.02562 * 22 20 19 24 24 C 1.38201 * 120.03486 * 359.97438 * 23 22 20 25 25 C 1.38294 * 120.01834 * 269.72673 * 19 18 16 26 26 Cl 1.73596 * 120.00150 * 359.97438 * 25 19 18 27 27 H 4.40635 * 5.51468 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47918 * 38.52392 * 3 2 1 29 29 H 1.09001 * 109.47083 * 278.51998 * 3 2 1 30 30 H 0.97001 * 120.00218 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.47036 * 149.99961 * 13 4 3 32 32 H 1.08998 * 109.47093 * 29.99581 * 13 4 3 33 33 H 1.08997 * 109.46724 * 270.00173 * 17 16 14 34 34 H 1.09000 * 109.46759 * 29.99781 * 17 16 14 35 35 H 1.08999 * 109.46723 * 149.99968 * 17 16 14 36 36 H 1.09000 * 109.47569 * 30.00398 * 18 16 14 37 37 H 1.09004 * 109.47238 * 150.00181 * 18 16 14 38 38 H 1.08005 * 120.00017 * 179.97438 * 22 20 19 39 39 H 1.08000 * 119.98395 * 180.02562 * 23 22 20 40 40 H 1.07998 * 119.98338 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.2863 -0.5056 5 6 3.4777 1.4172 -1.8246 6 1 4.1397 2.2126 -2.1336 7 6 2.9757 0.5275 -2.7644 8 7 1.9949 -0.2882 -2.4404 9 14 3.6920 0.4881 -4.4892 10 1 4.8900 -0.3892 -4.5077 11 1 2.6765 -0.0408 -5.4350 12 1 4.0788 1.8629 -4.8962 13 6 3.2532 2.4318 0.3998 14 6 1.9617 3.2083 0.4006 15 8 1.0330 2.8413 -0.2876 16 7 1.8386 4.3107 1.1663 17 6 2.9607 4.7543 1.9972 18 6 0.5833 5.0658 1.1667 19 6 0.6328 6.1234 0.0942 20 6 0.1889 5.8340 -1.1849 21 9 -0.2894 4.6036 -1.4722 22 6 0.2344 6.8066 -2.1691 23 6 0.7233 8.0655 -1.8747 24 6 1.1664 8.3544 -0.5979 25 6 1.1165 7.3851 0.3885 26 17 1.6662 7.7513 1.9939 27 1 -1.0502 -0.0003 0.0003 28 1 3.0098 -0.8031 -0.6400 29 1 3.0094 -0.1514 1.0163 30 1 1.6444 -0.9101 -3.0970 31 1 4.0649 3.0772 0.0639 32 1 3.4646 2.0771 1.4085 33 1 2.8926 4.2866 2.9794 34 1 3.8994 4.4682 1.5228 35 1 2.9248 5.8381 2.1076 36 1 -0.2482 4.3887 0.9712 37 1 0.4449 5.5400 2.1384 38 1 -0.1114 6.5814 -3.1672 39 1 0.7582 8.8241 -2.6426 40 1 1.5479 9.3384 -0.3687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281395972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:28 Heat of formation + Delta-G solvation = 26.542463 kcal Electronic energy + Delta-G solvation = -27765.668239 eV Core-core repulsion = 23716.751097 eV Total energy + Delta-G solvation = -4048.917142 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.84963 -40.86529 -39.89037 -37.59500 -37.53745 -36.25232 -33.49820 -33.28804 -32.64982 -31.43491 -29.26862 -28.05596 -27.81512 -26.41765 -23.92920 -23.79594 -22.64546 -20.05053 -19.31415 -18.70242 -18.39189 -17.98793 -17.33679 -17.17075 -17.16736 -16.75321 -16.26926 -16.02989 -15.77841 -15.34935 -15.22088 -14.81046 -14.57375 -14.36330 -14.24121 -13.80241 -13.61162 -13.52097 -13.31816 -13.18951 -13.00523 -12.73935 -12.66075 -12.48719 -12.38729 -12.24735 -12.19490 -11.95442 -11.72716 -10.91390 -10.65664 -10.49253 -10.17346 -9.92231 -9.73181 -9.43874 -8.83703 -7.76895 -5.26926 -0.09062 0.00095 0.92987 1.45255 1.46886 1.54109 2.07407 2.17348 2.42629 2.56843 2.59948 2.72925 3.31244 3.37905 3.56584 3.62559 3.84557 3.86824 4.08854 4.18739 4.20817 4.37720 4.41089 4.46161 4.59400 4.61661 4.68978 4.83753 4.91238 4.95486 4.98521 5.04088 5.08801 5.16933 5.37922 5.62396 5.68268 5.73051 5.75748 6.29899 6.64642 7.12565 7.53967 7.63919 7.86494 8.24316 9.22898 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.004338 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.238437 B = 6452.539719 C = 7206.906961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.102 4.102 3 C 0.272 3.728 4 N -0.574 5.574 5 C -0.262 4.262 6 H 0.074 0.926 7 C -0.045 4.045 8 N -0.912 5.912 9 Si 0.965 3.035 10 H -0.275 1.275 11 H -0.305 1.305 12 H -0.277 1.277 13 C 0.130 3.870 14 C 0.458 3.542 15 O -0.529 6.529 16 N -0.621 5.621 17 C 0.069 3.931 18 C 0.158 3.842 19 C -0.146 4.146 20 C 0.094 3.906 21 F -0.141 7.141 22 C -0.166 4.166 23 C -0.065 4.065 24 C -0.118 4.118 25 C -0.003 4.003 26 Cl -0.040 7.040 27 H 0.199 0.801 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.242 0.758 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.144 0.856 39 H 0.181 0.819 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.804 20.423 9.789 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 C -0.105 4.105 3 C 0.147 3.853 4 N -0.292 5.292 5 C -0.392 4.392 6 H 0.091 0.909 7 C -0.241 4.241 8 N -0.557 5.557 9 Si 0.794 3.206 10 H -0.201 1.201 11 H -0.232 1.232 12 H -0.202 1.202 13 C -0.001 4.001 14 C 0.244 3.756 15 O -0.402 6.402 16 N -0.358 5.358 17 C -0.073 4.073 18 C 0.034 3.966 19 C -0.149 4.149 20 C 0.074 3.926 21 F -0.120 7.120 22 C -0.184 4.184 23 C -0.083 4.083 24 C -0.136 4.136 25 C -0.030 4.030 26 Cl -0.010 7.010 27 H 0.216 0.784 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.162 0.838 39 H 0.198 0.802 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.345 20.022 9.441 22.177 hybrid contribution -0.803 -0.683 -1.301 1.674 sum 0.542 19.338 8.140 20.989 Atomic orbital electron populations 1.24514 0.96044 1.04311 1.08330 1.24464 0.95857 0.96580 0.93611 1.17896 0.82423 0.88852 0.96089 1.44191 1.73081 1.05258 1.06655 1.19398 1.21691 1.13738 0.84349 0.90861 1.25741 0.96938 1.00403 1.01043 1.70246 1.26264 1.25140 1.34000 0.85337 0.77202 0.77723 0.80362 1.20078 1.23210 1.20203 1.21280 0.92990 0.89436 0.96345 1.23377 0.92703 0.80732 0.78796 1.90797 1.41602 1.67543 1.40284 1.48324 1.14495 1.26714 1.46284 1.22156 0.88465 1.01780 0.94885 1.20052 0.88364 0.91234 0.96931 1.20191 1.03306 0.96272 0.95119 1.18074 0.98994 0.81012 0.94549 1.91635 1.85396 1.41090 1.93832 1.21590 1.03306 0.94069 0.99482 1.21388 0.94393 0.95288 0.97194 1.21488 1.00474 1.00120 0.91545 1.20624 1.00731 0.93365 0.88309 1.98350 1.87486 1.93759 1.21436 0.78403 0.90498 0.91610 0.94791 0.89150 0.88229 0.91133 0.90295 0.89868 0.92503 0.87115 0.83807 0.80195 0.80882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -16.60 18.77 74.32 1.40 -15.20 16 2 C -0.10 -5.52 9.92 31.12 0.31 -5.21 16 3 C 0.27 13.56 5.45 84.57 0.46 14.02 16 4 N -0.57 -28.66 2.09 -716.91 -1.50 -30.15 16 5 C -0.26 -14.47 9.69 84.03 0.81 -13.66 16 6 H 0.07 3.93 7.84 -2.91 -0.02 3.90 16 7 C -0.05 -2.58 5.07 84.86 0.43 -2.15 16 8 N -0.91 -55.72 9.08 21.65 0.20 -55.52 16 9 Si 0.96 46.69 29.57 68.60 2.03 48.72 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.13 5.11 4.73 85.63 0.40 5.51 16 14 C 0.46 19.32 7.65 87.65 0.67 19.99 16 15 O -0.53 -28.22 11.74 -3.03 -0.04 -28.25 16 16 N -0.62 -19.82 2.86 -851.14 -2.43 -22.26 16 17 C 0.07 1.49 10.24 127.77 1.31 2.80 16 18 C 0.16 4.86 5.01 85.63 0.43 5.29 16 19 C -0.15 -4.27 5.47 -19.80 -0.11 -4.38 16 20 C 0.09 3.20 7.24 22.37 0.16 3.37 16 21 F -0.14 -6.39 14.20 44.97 0.64 -5.75 16 22 C -0.17 -4.28 10.03 22.32 0.22 -4.06 16 23 C -0.06 -1.11 10.04 22.26 0.22 -0.89 16 24 C -0.12 -1.95 9.83 22.30 0.22 -1.73 16 25 C 0.00 -0.06 6.31 22.32 0.14 0.08 16 26 Cl -0.04 -0.68 24.56 -2.72 -0.07 -0.74 16 27 H 0.20 9.35 7.80 -4.41 -0.03 9.32 16 28 H 0.08 4.20 6.41 -2.39 -0.02 4.18 16 29 H 0.07 2.73 7.98 -2.39 -0.02 2.71 16 30 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.09 3.22 7.29 -2.38 -0.02 3.20 16 32 H 0.10 3.21 7.92 -2.39 -0.02 3.19 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.60 6.44 -2.39 -0.02 1.58 16 35 H 0.08 1.55 5.02 -2.39 -0.01 1.54 16 36 H 0.06 2.17 6.92 -2.39 -0.02 2.15 16 37 H 0.11 2.69 6.82 -2.38 -0.02 2.67 16 38 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -79.61 351.94 6.99 -72.62 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.07 Total: 17.55 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 7.08 Total: 3.79 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -3.73 Total: -107.93 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.04 Total: -28.25 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.64 Total: -5.75 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.07 Total: -0.74 kcal Total: -79.61 6.99 -72.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281395972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.167 kcal (2) G-P(sol) polarization free energy of solvation -79.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds