Wall clock time and date at job start Tue Mar 31 2020 21:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47229 * 2 1 4 4 C 1.50701 * 109.47049 * 119.99956 * 2 1 3 5 5 H 1.08000 * 119.99926 * 120.00191 * 4 2 1 6 6 C 1.37882 * 120.00115 * 299.99810 * 4 2 1 7 7 N 1.31512 * 119.99769 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47236 * 60.00211 * 8 6 4 10 10 H 1.48498 * 109.47034 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47194 * 299.99683 * 8 6 4 12 12 N 1.46503 * 109.46958 * 239.99844 * 2 1 3 13 13 C 1.46508 * 119.99765 * 299.99883 * 12 2 1 14 14 S 1.65594 * 119.99857 * 120.00168 * 12 2 1 15 15 O 1.42096 * 106.40270 * 336.45501 * 14 12 2 16 16 O 1.42107 * 106.40233 * 203.53887 * 14 12 2 17 17 N 1.65600 * 107.22141 * 90.00167 * 14 12 2 18 18 C 1.46503 * 119.99887 * 64.99400 * 17 14 12 19 19 C 1.50701 * 109.46707 * 165.00602 * 18 17 14 20 20 N 1.30496 * 125.65380 * 89.97926 * 19 18 17 21 21 C 1.34130 * 109.26014 * 180.02562 * 20 19 18 22 22 C 1.34674 * 108.01710 * 359.97438 * 21 20 19 23 23 N 1.35054 * 125.64688 * 270.28846 * 19 18 17 24 24 C 1.46496 * 126.39961 * 359.97438 * 23 19 18 25 25 F 1.39898 * 109.47027 * 210.14813 * 24 23 19 26 26 F 1.39905 * 109.46990 * 330.14734 * 24 23 19 27 27 H 1.08998 * 109.46949 * 299.99963 * 1 2 3 28 28 H 1.08997 * 109.47187 * 60.00050 * 1 2 3 29 29 H 1.09008 * 109.47425 * 180.02562 * 1 2 3 30 30 H 0.96997 * 119.99813 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47049 * 269.99827 * 13 12 2 32 32 H 1.08994 * 109.47069 * 30.00238 * 13 12 2 33 33 H 1.08998 * 109.46315 * 150.00409 * 13 12 2 34 34 H 0.97002 * 119.99906 * 245.00105 * 17 14 12 35 35 H 1.08996 * 109.47117 * 45.00532 * 18 17 14 36 36 H 1.09002 * 109.46933 * 284.99979 * 18 17 14 37 37 H 1.07997 * 125.98942 * 179.97438 * 21 20 19 38 38 H 1.08002 * 126.58669 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.46872 * 90.14491 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8279 -0.4191 5.2204 11 1 1.8280 -2.5197 4.0082 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.6903 1.4971 -2.1193 16 8 2.8227 -0.5647 -3.5259 17 7 4.5437 -0.1043 -1.8181 18 6 5.1356 -1.4443 -1.8415 19 6 6.6348 -1.3330 -1.7351 20 7 7.3201 -1.3265 -0.6246 21 6 8.6256 -1.2132 -0.9111 22 6 8.7541 -1.1476 -2.2500 23 7 7.4911 -1.2176 -2.7731 24 6 7.1351 -1.1788 -4.1936 25 9 8.1760 -1.7274 -4.9504 26 9 5.9666 -1.9194 -4.4019 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7088 1.1613 3.4844 31 1 2.4157 -2.7378 -0.9716 32 1 0.6904 -2.3003 -0.9846 33 1 1.6238 -2.2853 -2.5001 34 1 5.0734 0.6549 -1.5283 35 1 4.8735 -1.9409 -2.7757 36 1 4.7539 -2.0248 -1.0017 37 1 9.4322 -1.1803 -0.1937 38 1 9.6761 -1.0526 -2.8043 39 1 6.9696 -0.1455 -4.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283007300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:32 Heat of formation + Delta-G solvation = -91.145788 kcal Electronic energy + Delta-G solvation = -28701.883615 eV Core-core repulsion = 24251.430360 eV Total energy + Delta-G solvation = -4450.453255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.101 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.77146 -47.88614 -42.34504 -36.78548 -36.17273 -35.34471 -35.22406 -33.79205 -32.57866 -30.06965 -29.06711 -26.80992 -25.65849 -25.42537 -25.10855 -21.82200 -20.98300 -20.74328 -19.03048 -18.69950 -18.48056 -17.66785 -17.26269 -16.78291 -16.39170 -16.00425 -15.36405 -15.15424 -14.89007 -14.76279 -14.55443 -14.37703 -14.17158 -13.79023 -13.49243 -13.35129 -13.23931 -12.87183 -12.75354 -12.48848 -11.99081 -11.81648 -11.67090 -11.56507 -11.34872 -11.16239 -10.97936 -10.79301 -10.45116 -10.35371 -10.26055 -10.24552 -10.01347 -9.47201 -9.17898 -8.81909 -8.44250 -7.98145 -6.05608 -4.13760 1.07523 1.51267 1.77197 2.81589 3.11867 3.31750 3.36300 3.38725 3.48426 3.66845 3.96524 4.04527 4.09222 4.32015 4.40898 4.91354 4.99923 5.18882 5.25379 5.30786 5.56858 5.66205 5.79339 5.86039 6.16635 6.32585 6.33837 6.56467 6.63809 6.84002 6.85884 7.06735 7.13122 7.48982 7.65240 7.75320 7.80083 8.06090 8.28201 8.89061 9.52965 10.99428 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.004382 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.227631 B = 6388.612866 C = 7767.096101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.987 5.987 13 C 0.096 3.904 14 S 2.782 3.218 15 O -0.976 6.976 16 O -0.995 6.995 17 N -1.126 6.126 18 C 0.194 3.806 19 C 0.225 3.775 20 N -0.455 5.455 21 C -0.014 4.014 22 C -0.043 4.043 23 N -0.513 5.513 24 C 0.482 3.518 25 F -0.181 7.181 26 F -0.167 7.167 27 H 0.093 0.907 28 H 0.012 0.988 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.416 0.584 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.179 0.821 38 H 0.183 0.817 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.282 -4.359 -12.329 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.830 5.830 13 C -0.051 4.051 14 S 2.790 3.210 15 O -0.960 6.960 16 O -0.978 6.978 17 N -0.885 5.885 18 C 0.066 3.934 19 C -0.038 4.038 20 N -0.173 5.173 21 C -0.161 4.161 22 C -0.173 4.173 23 N -0.209 5.209 24 C 0.347 3.653 25 F -0.162 7.162 26 F -0.148 7.148 27 H 0.112 0.888 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.248 0.752 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.196 0.804 38 H 0.201 0.799 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.423 -3.997 -12.412 18.010 hybrid contribution 1.250 -0.468 0.623 1.473 sum 13.673 -4.465 -11.789 18.597 Atomic orbital electron populations 1.22071 0.97972 0.99651 1.00835 1.18749 0.91839 0.92720 0.80179 0.92355 1.21329 1.31791 1.13113 0.90073 0.91908 1.24908 0.94909 0.94956 0.99008 1.69867 1.36299 1.22663 1.23881 0.86587 0.79384 0.79589 0.82022 1.20072 1.21367 1.20312 1.57648 1.64084 1.21506 1.39778 1.21325 1.02123 0.81683 0.99922 1.01845 0.72401 0.73298 0.73413 1.93611 1.83270 1.32284 1.86881 1.93544 1.85828 1.76353 1.42105 1.56191 1.32731 1.14014 1.85533 1.19822 0.82856 0.85585 1.05125 1.23369 0.94495 1.04635 0.81261 1.70437 1.04114 1.17414 1.25345 1.22507 0.94153 1.05994 0.93424 1.22740 0.87325 1.11356 0.95865 1.46848 1.09115 1.58134 1.06800 1.21625 0.72812 0.94332 0.76564 1.93110 1.59218 1.88478 1.75402 1.93111 1.47765 1.80145 1.93801 0.88812 0.96861 0.94766 0.92647 0.93767 0.90421 0.91939 0.75151 0.87792 0.87874 0.80379 0.79941 0.82790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.95 37.16 0.33 -3.09 16 2 C 0.27 6.46 2.62 -69.08 -0.18 6.27 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.41 8.37 -34.44 -0.29 -13.70 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.48 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.99 -19.77 3.12 -115.85 -0.36 -20.13 16 13 C 0.10 1.63 9.90 59.85 0.59 2.22 16 14 S 2.78 51.76 6.14 -107.50 -0.66 51.10 16 15 O -0.98 -21.43 16.70 -57.17 -0.95 -22.38 16 16 O -0.99 -18.69 16.21 -57.17 -0.93 -19.62 16 17 N -1.13 -17.42 6.05 -11.65 -0.07 -17.50 16 18 C 0.19 2.74 6.44 -5.19 -0.03 2.71 16 19 C 0.23 3.06 7.20 -155.41 -1.12 1.94 16 20 N -0.46 -6.80 11.25 -10.81 -0.12 -6.92 16 21 C -0.01 -0.16 11.87 -17.81 -0.21 -0.37 16 22 C -0.04 -0.41 11.16 -16.56 -0.18 -0.59 16 23 N -0.51 -5.53 3.14 -119.65 -0.38 -5.91 16 24 C 0.48 4.20 6.44 59.84 0.39 4.58 16 25 F -0.18 -1.53 17.04 2.25 0.04 -1.50 16 26 F -0.17 -1.84 14.50 2.25 0.03 -1.81 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.03 0.74 6.66 -51.92 -0.35 0.40 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.33 6.43 -51.93 -0.33 1.00 16 33 H 0.06 0.95 7.02 -51.93 -0.36 0.59 16 34 H 0.42 6.07 8.64 -34.47 -0.30 5.77 16 35 H 0.10 1.37 5.19 -51.93 -0.27 1.10 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.16 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -33.14 346.15 -7.74 -40.88 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.36 Total: 5.08 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.80 Total: 1.61 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -0.30 Total: -74.32 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.88 Total: -42.00 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.07 Total: -3.30 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 51.76 SS G_CDS: -0.66 Total: 51.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.14 -7.74 -40.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283007300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.267 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds