Wall clock time and date at job start Tue Mar 31 2020 21:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47229 * 2 1 4 4 C 1.50701 * 109.47049 * 119.99956 * 2 1 3 5 5 H 1.08000 * 119.99926 * 120.00191 * 4 2 1 6 6 C 1.37882 * 120.00115 * 299.99810 * 4 2 1 7 7 N 1.31512 * 119.99769 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47236 * 60.00211 * 8 6 4 10 10 H 1.48498 * 109.47034 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47194 * 299.99683 * 8 6 4 12 12 N 1.46503 * 109.46958 * 239.99844 * 2 1 3 13 13 C 1.46508 * 119.99765 * 299.99883 * 12 2 1 14 14 S 1.65594 * 119.99857 * 120.00168 * 12 2 1 15 15 O 1.42096 * 106.40270 * 336.45501 * 14 12 2 16 16 O 1.42107 * 106.40233 * 203.53887 * 14 12 2 17 17 N 1.65600 * 107.22141 * 90.00167 * 14 12 2 18 18 C 1.46503 * 119.99887 * 64.99400 * 17 14 12 19 19 C 1.50701 * 109.46707 * 165.00602 * 18 17 14 20 20 N 1.30496 * 125.65380 * 89.97926 * 19 18 17 21 21 C 1.34130 * 109.26014 * 180.02562 * 20 19 18 22 22 C 1.34674 * 108.01710 * 359.97438 * 21 20 19 23 23 N 1.35054 * 125.64688 * 270.28846 * 19 18 17 24 24 C 1.46496 * 126.39961 * 359.97438 * 23 19 18 25 25 F 1.39898 * 109.47027 * 210.14813 * 24 23 19 26 26 F 1.39905 * 109.46990 * 330.14734 * 24 23 19 27 27 H 1.08998 * 109.46949 * 299.99963 * 1 2 3 28 28 H 1.08997 * 109.47187 * 60.00050 * 1 2 3 29 29 H 1.09008 * 109.47425 * 180.02562 * 1 2 3 30 30 H 0.96997 * 119.99813 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47049 * 269.99827 * 13 12 2 32 32 H 1.08994 * 109.47069 * 30.00238 * 13 12 2 33 33 H 1.08998 * 109.46315 * 150.00409 * 13 12 2 34 34 H 0.97002 * 119.99906 * 245.00105 * 17 14 12 35 35 H 1.08996 * 109.47117 * 45.00532 * 18 17 14 36 36 H 1.09002 * 109.46933 * 284.99979 * 18 17 14 37 37 H 1.07997 * 125.98942 * 179.97438 * 21 20 19 38 38 H 1.08002 * 126.58669 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.46872 * 90.14491 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8279 -0.4191 5.2204 11 1 1.8280 -2.5197 4.0082 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.6903 1.4971 -2.1193 16 8 2.8227 -0.5647 -3.5259 17 7 4.5437 -0.1043 -1.8181 18 6 5.1356 -1.4443 -1.8415 19 6 6.6348 -1.3330 -1.7351 20 7 7.3201 -1.3265 -0.6246 21 6 8.6256 -1.2132 -0.9111 22 6 8.7541 -1.1476 -2.2500 23 7 7.4911 -1.2176 -2.7731 24 6 7.1351 -1.1788 -4.1936 25 9 8.1760 -1.7274 -4.9504 26 9 5.9666 -1.9194 -4.4019 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7088 1.1613 3.4844 31 1 2.4157 -2.7378 -0.9716 32 1 0.6904 -2.3003 -0.9846 33 1 1.6238 -2.2853 -2.5001 34 1 5.0734 0.6549 -1.5283 35 1 4.8735 -1.9409 -2.7757 36 1 4.7539 -2.0248 -1.0017 37 1 9.4322 -1.1803 -0.1937 38 1 9.6761 -1.0526 -2.8043 39 1 6.9696 -0.1455 -4.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283007300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:31 Heat of formation + Delta-G solvation = -115.690191 kcal Electronic energy + Delta-G solvation = -28702.947940 eV Core-core repulsion = 24251.430360 eV Total energy + Delta-G solvation = -4451.517580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.101 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.47723 -48.59637 -43.20967 -38.36329 -37.88515 -36.92897 -36.43279 -34.64179 -34.48425 -31.03109 -30.88861 -27.66976 -27.26563 -26.94725 -26.42309 -22.63524 -22.59655 -21.82425 -20.43576 -19.61154 -19.20363 -18.80117 -18.45781 -18.26457 -18.18524 -17.36350 -16.77541 -16.25777 -16.06848 -15.79652 -15.57705 -15.29851 -15.15578 -14.95890 -14.78938 -14.64113 -14.58846 -14.23356 -13.84696 -13.63624 -13.44454 -13.29193 -13.19953 -13.13908 -13.05282 -12.89758 -12.73817 -12.59053 -12.22391 -12.13679 -11.84809 -11.26189 -11.17938 -11.14226 -10.62641 -10.46046 -9.71876 -9.58929 -8.06367 -6.20100 -0.37103 0.63285 1.00157 1.47528 1.49476 1.55688 1.82003 2.12422 2.47004 2.48539 2.61249 2.94508 3.03939 3.22447 3.40297 3.49255 3.56681 4.04351 4.12910 4.32277 4.43451 4.61452 4.63744 4.77340 4.85415 4.96692 4.99514 5.08000 5.19666 5.21362 5.59517 5.63758 5.66740 5.70074 5.87078 5.95398 6.13940 6.32600 6.87362 6.88801 7.49504 8.97794 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.004382 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.227631 B = 6388.612866 C = 7767.096101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.526 4.526 5 H 0.067 0.933 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.995 5.995 13 C 0.089 3.911 14 S 2.801 3.199 15 O -1.012 7.012 16 O -0.994 6.994 17 N -1.116 6.116 18 C 0.195 3.805 19 C 0.202 3.798 20 N -0.495 5.495 21 C -0.039 4.039 22 C -0.018 4.018 23 N -0.511 5.511 24 C 0.477 3.523 25 F -0.177 7.177 26 F -0.182 7.182 27 H 0.069 0.931 28 H 0.021 0.979 29 H 0.046 0.954 30 H 0.262 0.738 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.420 0.580 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.199 0.801 38 H 0.223 0.777 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.024 -5.460 -13.335 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.565 4.565 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.194 1.194 12 N -0.837 5.837 13 C -0.056 4.056 14 S 2.810 3.190 15 O -0.997 6.997 16 O -0.977 6.977 17 N -0.877 5.877 18 C 0.068 3.932 19 C -0.060 4.060 20 N -0.215 5.215 21 C -0.185 4.185 22 C -0.148 4.148 23 N -0.207 5.207 24 C 0.343 3.657 25 F -0.159 7.159 26 F -0.164 7.164 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.254 0.746 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.216 0.784 38 H 0.239 0.761 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 14.156 -5.124 -13.446 20.185 hybrid contribution 0.835 -0.154 0.850 1.201 sum 14.990 -5.278 -12.597 20.279 Atomic orbital electron populations 1.21948 0.97719 1.00204 1.00061 1.18391 0.92053 0.91333 0.81354 0.95697 1.21591 1.31276 1.12987 0.90695 0.91510 1.25619 0.95254 0.95619 1.01665 1.69998 1.37495 1.23953 1.24246 0.85675 0.78511 0.78881 0.78897 1.20262 1.21427 1.19376 1.57550 1.64972 1.22654 1.38540 1.21535 1.02473 0.80195 1.01392 1.01146 0.72633 0.72158 0.73094 1.93560 1.84190 1.34603 1.87300 1.93539 1.86175 1.76119 1.41901 1.55876 1.31527 1.15085 1.85254 1.19834 0.83787 0.84341 1.05258 1.22999 0.94188 1.06831 0.82009 1.70346 1.06054 1.18276 1.26781 1.22972 0.93452 1.07028 0.95037 1.23363 0.87890 1.08080 0.95484 1.46986 1.09181 1.57194 1.07295 1.22220 0.72246 0.95697 0.75540 1.93118 1.59033 1.88647 1.75077 1.93073 1.48768 1.80731 1.93780 0.91236 0.95967 0.93472 0.92827 0.92347 0.90635 0.89967 0.74625 0.86744 0.88825 0.78418 0.76086 0.79089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 8.95 71.98 0.64 -5.96 16 2 C 0.27 13.29 2.62 44.25 0.12 13.41 16 3 H 0.03 1.39 6.91 -2.39 -0.02 1.37 16 4 C -0.53 -26.95 8.37 25.60 0.21 -26.74 16 5 H 0.07 3.30 7.65 -2.91 -0.02 3.28 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -51.35 11.32 21.45 0.24 -51.11 16 8 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 N -1.00 -39.46 3.12 -520.43 -1.62 -41.08 16 13 C 0.09 2.92 9.90 127.77 1.27 4.18 16 14 S 2.80 103.01 6.14 -56.49 -0.35 102.66 16 15 O -1.01 -44.94 16.70 -128.00 -2.14 -47.08 16 16 O -0.99 -35.95 16.21 -128.00 -2.08 -38.02 16 17 N -1.12 -33.95 6.05 -190.79 -1.15 -35.11 16 18 C 0.20 5.35 6.44 85.63 0.55 5.90 16 19 C 0.20 5.26 7.20 138.13 0.99 6.26 16 20 N -0.50 -14.40 11.25 -188.12 -2.12 -16.52 16 21 C -0.04 -0.81 11.87 83.52 0.99 0.18 16 22 C -0.02 -0.29 11.16 83.09 0.93 0.64 16 23 N -0.51 -9.82 3.14 -532.45 -1.67 -11.49 16 24 C 0.48 6.99 6.44 127.77 0.82 7.81 16 25 F -0.18 -2.46 17.04 44.97 0.77 -1.70 16 26 F -0.18 -3.64 14.50 44.97 0.65 -2.99 16 27 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 2.04 6.66 -2.38 -0.02 2.03 16 30 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.07 2.48 6.43 -2.39 -0.02 2.47 16 33 H 0.08 2.35 7.02 -2.39 -0.02 2.33 16 34 H 0.42 12.17 8.64 -96.74 -0.84 11.34 16 35 H 0.11 2.86 5.19 -2.39 -0.01 2.85 16 36 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.22 1.60 8.06 -2.91 -0.02 1.57 16 39 H 0.19 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.25 346.15 -0.19 -71.44 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.28 Total: 19.31 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 6.98 Total: 7.09 kcal Atomic # 7 Polarization: -148.98 SS G_CDS: -6.32 Total: -155.31 kcal Atomic # 8 Polarization: -80.89 SS G_CDS: -4.21 Total: -85.10 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.42 Total: -4.69 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 103.01 SS G_CDS: -0.35 Total: 102.66 kcal Total: -71.25 -0.19 -71.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283007300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.253 kcal (2) G-P(sol) polarization free energy of solvation -71.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds