Wall clock time and date at job start Tue Mar 31 2020 21:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47334 * 2 1 4 4 C 1.50696 * 109.47642 * 239.99186 * 2 1 3 5 5 H 1.07996 * 120.00536 * 240.00751 * 4 2 1 6 6 C 1.37873 * 119.99487 * 60.00224 * 4 2 1 7 7 N 1.31515 * 120.00599 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99986 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46935 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47156 * 119.99848 * 8 6 4 11 11 H 1.48494 * 109.47253 * 240.00415 * 8 6 4 12 12 C 1.53006 * 109.46803 * 119.99317 * 2 1 3 13 13 S 1.81401 * 109.47305 * 300.00254 * 12 2 1 14 14 O 1.42101 * 110.54140 * 68.37087 * 13 12 2 15 15 O 1.42104 * 110.54219 * 291.62569 * 13 12 2 16 16 O 1.52191 * 104.45032 * 179.97438 * 13 12 2 17 17 C 1.35668 * 114.00043 * 75.00008 * 16 13 12 18 18 C 1.39075 * 119.96844 * 89.99722 * 17 16 13 19 19 C 1.36400 * 120.25123 * 179.74509 * 18 17 16 20 20 C 1.40575 * 120.26236 * 0.27789 * 19 18 17 21 21 C 1.39665 * 119.39468 * 359.97438 * 20 19 18 22 22 C 1.37930 * 119.89242 * 359.97125 * 21 20 19 23 23 C 1.50982 * 109.57601 * 179.97438 * 21 20 19 24 24 C 1.53494 * 106.25719 * 359.97438 * 23 21 20 25 25 C 1.46932 * 129.96468 * 179.97438 * 20 19 18 26 26 O 1.21294 * 125.90985 * 359.96169 * 25 20 19 27 27 H 1.09002 * 109.47069 * 300.00654 * 1 2 3 28 28 H 1.09003 * 109.46694 * 60.00452 * 1 2 3 29 29 H 1.08995 * 109.46869 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47105 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46861 * 299.99445 * 3 2 1 32 32 H 1.08998 * 109.47239 * 59.99282 * 3 2 1 33 33 H 0.97002 * 120.00201 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.46957 * 180.02562 * 12 2 1 35 35 H 1.08999 * 109.46728 * 59.99877 * 12 2 1 36 36 H 1.08002 * 119.87853 * 0.02856 * 18 17 16 37 37 H 1.07996 * 119.87127 * 180.25808 * 19 18 17 38 38 H 1.08009 * 119.92934 * 180.02562 * 22 21 20 39 39 H 1.08997 * 110.10010 * 119.19599 * 23 21 20 40 40 H 1.09000 * 110.09749 * 240.80001 * 23 21 20 41 41 H 1.08998 * 110.27198 * 118.97014 * 24 23 21 42 42 H 1.08997 * 110.27004 * 240.94168 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6995 -0.2396 -2.4826 7 7 0.9438 0.8300 -2.6035 8 14 2.3216 -1.1207 -4.0077 9 1 3.1457 -2.2881 -3.6034 10 1 1.1664 -1.5871 -4.8159 11 1 3.1470 -0.1879 -4.8163 12 6 2.0400 -0.7211 1.2494 13 16 1.4352 0.1341 2.7304 14 8 0.0278 -0.0180 2.8543 15 8 2.0478 1.4103 2.8544 16 8 2.0028 -0.6697 3.8915 17 6 3.3275 -0.4701 4.1054 18 6 3.7481 0.5370 4.9673 19 6 5.0784 0.7394 5.1906 20 6 6.0351 -0.0646 4.5468 21 6 5.6108 -1.0721 3.6775 22 6 4.2632 -1.2692 3.4594 23 6 6.8118 -1.7923 3.1132 24 6 8.0456 -1.1187 3.7297 25 6 7.5019 -0.0348 4.6286 26 8 8.1616 0.7297 5.3004 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 0.7092 1.1611 -3.4845 34 1 3.1299 -0.7208 1.2497 35 1 1.6766 -1.7488 1.2494 36 1 3.0185 1.1584 5.4654 37 1 5.3980 1.5205 5.8644 38 1 3.9344 -2.0484 2.7876 39 1 6.7816 -2.8457 3.3914 40 1 6.8333 -1.6913 2.0281 41 1 8.6177 -1.8400 4.3131 42 1 8.6699 -0.6862 2.9479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295196301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:05 Heat of formation + Delta-G solvation = -113.784337 kcal Electronic energy + Delta-G solvation = -28012.385748 eV Core-core repulsion = 24050.594840 eV Total energy + Delta-G solvation = -3961.790908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43230 -40.12249 -37.91320 -36.82379 -36.40647 -35.61003 -34.97342 -31.82514 -31.27066 -29.34669 -26.94288 -26.36361 -25.80152 -25.31144 -23.67500 -22.39738 -20.48560 -20.20519 -19.40787 -17.97550 -17.49750 -17.13241 -16.77868 -16.13283 -16.06974 -15.64371 -15.11044 -14.84653 -14.68762 -14.42128 -13.80321 -13.60308 -13.46843 -13.27497 -13.15276 -12.99044 -12.84976 -12.60758 -12.40296 -12.32898 -12.26162 -11.71774 -11.49752 -11.28536 -11.19123 -11.16118 -11.03852 -10.82473 -10.45063 -10.38147 -10.18439 -10.02935 -9.74779 -9.64416 -9.32373 -9.08506 -8.77313 -8.47488 -6.10594 -4.22976 -0.08512 0.72501 0.94460 1.99322 2.36851 3.20093 3.27774 3.28932 3.30351 3.58371 3.96737 4.06569 4.24488 4.29776 4.31347 4.48083 4.70066 4.72499 4.79244 4.91552 5.03349 5.15056 5.32737 5.33103 5.45598 5.50493 5.50818 5.60884 5.70160 5.81237 5.94132 5.97003 6.22644 6.46051 6.60224 6.70356 6.81087 6.95189 7.16361 7.23007 7.41634 7.60746 7.90377 8.00934 8.24285 8.75388 9.42905 10.90900 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012556 B = 0.004144 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.442230 B = 6754.790121 C = 8251.898485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.085 3.915 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.602 4.602 13 S 2.571 3.429 14 O -0.929 6.929 15 O -0.954 6.954 16 O -0.677 6.677 17 C 0.122 3.878 18 C -0.112 4.112 19 C -0.031 4.031 20 C -0.189 4.189 21 C -0.028 4.028 22 C -0.134 4.134 23 C -0.085 4.085 24 C -0.171 4.171 25 C 0.410 3.590 26 O -0.443 6.443 27 H 0.026 0.974 28 H 0.097 0.903 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.096 0.904 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 -5.388 12.292 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.083 3.917 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.734 4.734 13 S 2.672 3.328 14 O -0.927 6.927 15 O -0.952 6.952 16 O -0.635 6.635 17 C 0.080 3.920 18 C -0.132 4.132 19 C -0.049 4.049 20 C -0.191 4.191 21 C -0.028 4.028 22 C -0.154 4.154 23 C -0.122 4.122 24 C -0.208 4.208 25 C 0.288 3.712 26 O -0.317 6.317 27 H 0.045 0.955 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.435 -4.530 13.088 17.341 hybrid contribution 0.123 -0.920 -1.465 1.734 sum 10.559 -5.450 11.623 16.622 Atomic orbital electron populations 1.22302 0.96794 1.00833 1.02412 1.17932 0.92893 0.92226 0.88655 1.22284 0.99766 0.97648 1.02481 1.20937 1.31867 1.12127 0.89223 0.92174 1.24936 0.94836 0.94954 0.98956 1.69803 1.36202 1.22534 1.23485 0.86470 0.78664 0.79579 0.82864 1.19836 1.20914 1.20925 1.30803 1.11640 1.13449 1.17509 1.06321 0.75429 0.75244 0.75836 1.93599 1.28639 1.85831 1.84667 1.93607 1.77218 1.40116 1.84253 1.85731 1.29022 1.80081 1.68694 1.18160 0.77832 0.96870 0.99111 1.20955 0.97043 0.96867 0.98294 1.20753 0.90812 0.96914 0.96463 1.21278 0.96314 0.99721 1.01742 1.20328 0.93368 0.94803 0.94329 1.20787 0.91412 1.01175 1.02003 1.20881 0.89240 1.00031 1.02037 1.22324 0.99222 0.98631 1.00657 1.22382 0.87658 0.82307 0.78872 1.90567 1.66807 1.38017 1.36341 0.95482 0.88403 0.94261 0.94395 0.88493 0.95314 0.92706 0.85990 0.85603 0.83480 0.83907 0.83139 0.88371 0.87958 0.87108 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 7.78 37.16 0.29 -3.68 16 2 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 3 C -0.16 -3.88 7.78 37.16 0.29 -3.59 16 4 C -0.50 -12.61 8.01 -34.44 -0.28 -12.88 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.67 5.15 -17.82 -0.09 1.58 16 7 N -0.88 -23.37 9.35 55.43 0.52 -22.86 16 8 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 C -0.60 -11.27 4.38 37.16 0.16 -11.10 16 13 S 2.57 48.29 4.20 -107.50 -0.45 47.84 16 14 O -0.93 -19.98 15.71 -67.04 -1.05 -21.03 16 15 O -0.95 -19.06 13.88 -67.03 -0.93 -19.99 16 16 O -0.68 -10.82 10.04 -51.03 -0.51 -11.33 16 17 C 0.12 1.74 4.81 -39.00 -0.19 1.55 16 18 C -0.11 -1.45 8.97 -39.93 -0.36 -1.81 16 19 C -0.03 -0.36 10.05 -39.36 -0.40 -0.75 16 20 C -0.19 -2.11 6.11 -104.96 -0.64 -2.75 16 21 C -0.03 -0.28 6.20 -104.06 -0.65 -0.93 16 22 C -0.13 -1.58 8.44 -39.42 -0.33 -1.92 16 23 C -0.09 -0.57 6.80 -27.49 -0.19 -0.76 16 24 C -0.17 -1.12 6.86 -27.51 -0.19 -1.30 16 25 C 0.41 4.28 7.75 -30.67 -0.24 4.04 16 26 O -0.44 -5.90 18.03 5.54 0.10 -5.80 16 27 H 0.03 0.61 5.46 -51.93 -0.28 0.33 16 28 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 32 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 33 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.12 1.99 6.58 -51.93 -0.34 1.65 16 35 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 36 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.15 1.47 7.46 -52.48 -0.39 1.08 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -32.10 347.95 -10.27 -42.37 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.28 Total: 3.07 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: -2.88 Total: -32.40 kcal Atomic # 7 Polarization: -23.37 SS G_CDS: 0.52 Total: -22.86 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -2.40 Total: -58.15 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 48.29 SS G_CDS: -0.45 Total: 47.84 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.10 -10.27 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295196301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.419 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds