Wall clock time and date at job start Tue Mar 31 2020 21:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47334 * 2 1 4 4 C 1.50696 * 109.47642 * 239.99186 * 2 1 3 5 5 H 1.07996 * 120.00536 * 240.00751 * 4 2 1 6 6 C 1.37873 * 119.99487 * 60.00224 * 4 2 1 7 7 N 1.31515 * 120.00599 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99986 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46935 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47156 * 119.99848 * 8 6 4 11 11 H 1.48494 * 109.47253 * 240.00415 * 8 6 4 12 12 C 1.53006 * 109.46803 * 119.99317 * 2 1 3 13 13 S 1.81401 * 109.47305 * 300.00254 * 12 2 1 14 14 O 1.42101 * 110.54140 * 68.37087 * 13 12 2 15 15 O 1.42104 * 110.54219 * 291.62569 * 13 12 2 16 16 O 1.52191 * 104.45032 * 179.97438 * 13 12 2 17 17 C 1.35668 * 114.00043 * 75.00008 * 16 13 12 18 18 C 1.39075 * 119.96844 * 89.99722 * 17 16 13 19 19 C 1.36400 * 120.25123 * 179.74509 * 18 17 16 20 20 C 1.40575 * 120.26236 * 0.27789 * 19 18 17 21 21 C 1.39665 * 119.39468 * 359.97438 * 20 19 18 22 22 C 1.37930 * 119.89242 * 359.97125 * 21 20 19 23 23 C 1.50982 * 109.57601 * 179.97438 * 21 20 19 24 24 C 1.53494 * 106.25719 * 359.97438 * 23 21 20 25 25 C 1.46932 * 129.96468 * 179.97438 * 20 19 18 26 26 O 1.21294 * 125.90985 * 359.96169 * 25 20 19 27 27 H 1.09002 * 109.47069 * 300.00654 * 1 2 3 28 28 H 1.09003 * 109.46694 * 60.00452 * 1 2 3 29 29 H 1.08995 * 109.46869 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47105 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46861 * 299.99445 * 3 2 1 32 32 H 1.08998 * 109.47239 * 59.99282 * 3 2 1 33 33 H 0.97002 * 120.00201 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.46957 * 180.02562 * 12 2 1 35 35 H 1.08999 * 109.46728 * 59.99877 * 12 2 1 36 36 H 1.08002 * 119.87853 * 0.02856 * 18 17 16 37 37 H 1.07996 * 119.87127 * 180.25808 * 19 18 17 38 38 H 1.08009 * 119.92934 * 180.02562 * 22 21 20 39 39 H 1.08997 * 110.10010 * 119.19599 * 23 21 20 40 40 H 1.09000 * 110.09749 * 240.80001 * 23 21 20 41 41 H 1.08998 * 110.27198 * 118.97014 * 24 23 21 42 42 H 1.08997 * 110.27004 * 240.94168 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6995 -0.2396 -2.4826 7 7 0.9438 0.8300 -2.6035 8 14 2.3216 -1.1207 -4.0077 9 1 3.1457 -2.2881 -3.6034 10 1 1.1664 -1.5871 -4.8159 11 1 3.1470 -0.1879 -4.8163 12 6 2.0400 -0.7211 1.2494 13 16 1.4352 0.1341 2.7304 14 8 0.0278 -0.0180 2.8543 15 8 2.0478 1.4103 2.8544 16 8 2.0028 -0.6697 3.8915 17 6 3.3275 -0.4701 4.1054 18 6 3.7481 0.5370 4.9673 19 6 5.0784 0.7394 5.1906 20 6 6.0351 -0.0646 4.5468 21 6 5.6108 -1.0721 3.6775 22 6 4.2632 -1.2692 3.4594 23 6 6.8118 -1.7923 3.1132 24 6 8.0456 -1.1187 3.7297 25 6 7.5019 -0.0348 4.6286 26 8 8.1616 0.7297 5.3004 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 0.7092 1.1611 -3.4845 34 1 3.1299 -0.7208 1.2497 35 1 1.6766 -1.7488 1.2494 36 1 3.0185 1.1584 5.4654 37 1 5.3980 1.5205 5.8644 38 1 3.9344 -2.0484 2.7876 39 1 6.7816 -2.8457 3.3914 40 1 6.8333 -1.6913 2.0281 41 1 8.6177 -1.8400 4.3131 42 1 8.6699 -0.6862 2.9479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295196301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:04 Heat of formation + Delta-G solvation = -132.822462 kcal Electronic energy + Delta-G solvation = -28013.211303 eV Core-core repulsion = 24050.594840 eV Total energy + Delta-G solvation = -3962.616463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.45409 -41.07278 -38.85848 -38.35543 -38.16819 -37.17364 -35.74296 -33.66290 -32.20859 -30.14092 -28.54174 -27.70111 -27.27017 -27.10410 -24.57100 -23.36690 -21.71755 -21.09952 -20.95182 -19.33347 -18.78230 -18.26744 -17.92950 -17.68616 -16.82319 -16.76850 -16.72165 -16.41238 -15.73256 -15.31307 -15.05885 -14.79854 -14.57571 -14.48470 -14.47333 -14.25038 -14.14342 -13.94278 -13.77582 -13.51810 -13.23320 -13.05667 -12.96272 -12.92080 -12.76856 -12.55931 -12.23913 -12.13344 -12.10323 -12.07097 -11.98051 -11.58415 -11.40294 -10.82786 -10.64391 -10.40814 -10.20544 -9.96657 -8.01420 -6.19815 -1.22417 -0.48315 0.07788 1.02392 1.18796 1.46305 1.49934 1.58701 2.40338 2.45106 2.55852 2.84111 2.92806 3.22423 3.28483 3.52536 3.60078 3.83426 3.93140 3.97218 4.00751 4.16348 4.22240 4.31379 4.55837 4.59347 4.64871 4.81369 4.84760 4.86714 4.95191 4.96233 4.98685 5.07536 5.09908 5.11195 5.15084 5.37434 5.49683 5.54771 5.66963 5.96879 6.10699 6.33712 6.38598 6.85132 7.48894 8.98994 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012556 B = 0.004144 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.442230 B = 6754.790121 C = 8251.898485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 C -0.160 4.160 4 C -0.512 4.512 5 H 0.071 0.929 6 C 0.018 3.982 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.260 1.260 10 H -0.288 1.288 11 H -0.286 1.286 12 C -0.601 4.601 13 S 2.586 3.414 14 O -0.965 6.965 15 O -0.973 6.973 16 O -0.669 6.669 17 C 0.084 3.916 18 C -0.128 4.128 19 C -0.038 4.038 20 C -0.201 4.201 21 C -0.020 4.020 22 C -0.136 4.136 23 C -0.082 4.082 24 C -0.162 4.162 25 C 0.408 3.592 26 O -0.480 6.480 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.260 0.740 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.128 0.872 40 H 0.118 0.882 41 H 0.138 0.862 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.219 -7.753 12.021 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.071 3.929 3 C -0.218 4.218 4 C -0.551 4.551 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.184 1.184 10 H -0.214 1.214 11 H -0.212 1.212 12 C -0.732 4.732 13 S 2.688 3.312 14 O -0.963 6.963 15 O -0.971 6.971 16 O -0.628 6.628 17 C 0.043 3.957 18 C -0.148 4.148 19 C -0.057 4.057 20 C -0.203 4.203 21 C -0.021 4.021 22 C -0.156 4.156 23 C -0.119 4.119 24 C -0.198 4.198 25 C 0.288 3.712 26 O -0.357 6.357 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.191 0.809 39 H 0.146 0.854 40 H 0.136 0.864 41 H 0.156 0.844 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.976 -6.905 12.814 19.500 hybrid contribution -0.583 -0.174 -1.282 1.419 sum 12.393 -7.079 11.532 18.349 Atomic orbital electron populations 1.22262 0.97907 1.00729 1.01344 1.17912 0.92216 0.92241 0.90488 1.22213 1.00031 0.98171 1.01399 1.21295 1.31599 1.12331 0.89864 0.91119 1.25676 0.95176 0.95604 1.01718 1.69952 1.37286 1.23799 1.23761 0.85551 0.77946 0.78815 0.79564 1.18405 1.21420 1.21196 1.30691 1.13340 1.14053 1.15128 1.05719 0.74569 0.74909 0.75985 1.93547 1.30989 1.86364 1.85391 1.93568 1.77283 1.41585 1.84676 1.85684 1.30462 1.79316 1.67336 1.18605 0.77175 0.98800 1.01168 1.21106 0.97830 0.97110 0.98752 1.20961 0.90481 0.97442 0.96772 1.21688 0.97132 0.99794 1.01659 1.20751 0.93812 0.94249 0.93281 1.21085 0.91646 1.01036 1.01784 1.21087 0.86967 1.01109 1.02692 1.22416 0.99548 0.97521 1.00341 1.22951 0.87151 0.82528 0.78560 1.90559 1.67246 1.39762 1.38145 0.95247 0.90779 0.93823 0.93751 0.91010 0.94963 0.93011 0.83374 0.83293 0.83440 0.82755 0.80896 0.85405 0.86392 0.84440 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.95 7.78 71.98 0.56 -7.39 16 2 C 0.07 3.36 0.52 -52.93 -0.03 3.33 16 3 C -0.16 -7.60 7.78 71.98 0.56 -7.04 16 4 C -0.51 -24.93 8.01 25.60 0.21 -24.72 16 5 H 0.07 3.22 7.74 -2.91 -0.02 3.20 16 6 C 0.02 0.89 5.15 84.65 0.44 1.33 16 7 N -0.91 -48.73 9.35 21.45 0.20 -48.52 16 8 Si 0.95 40.07 29.54 68.60 2.03 42.09 16 9 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 10 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 12 C -0.60 -21.31 4.38 71.98 0.32 -20.99 16 13 S 2.59 95.96 4.20 -56.49 -0.24 95.72 16 14 O -0.96 -41.76 15.71 -118.57 -1.86 -43.63 16 15 O -0.97 -38.97 13.88 -118.57 -1.65 -40.62 16 16 O -0.67 -20.90 10.04 -58.94 -0.59 -21.49 16 17 C 0.08 2.30 4.81 22.65 0.11 2.41 16 18 C -0.13 -3.31 8.97 22.04 0.20 -3.12 16 19 C -0.04 -0.86 10.05 22.41 0.23 -0.64 16 20 C -0.20 -4.11 6.11 -20.09 -0.12 -4.23 16 21 C -0.02 -0.35 6.20 -19.50 -0.12 -0.47 16 22 C -0.14 -2.84 8.44 22.37 0.19 -2.65 16 23 C -0.08 -0.69 6.80 30.10 0.20 -0.48 16 24 C -0.16 -1.40 6.86 30.09 0.21 -1.20 16 25 C 0.41 7.59 7.75 28.04 0.22 7.81 16 26 O -0.48 -12.27 18.03 -3.07 -0.06 -12.33 16 27 H 0.03 1.36 5.46 -2.39 -0.01 1.35 16 28 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 32 H 0.03 1.46 5.46 -2.39 -0.01 1.45 16 33 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 34 H 0.15 4.40 6.58 -2.39 -0.02 4.39 16 35 H 0.15 4.55 8.14 -2.39 -0.02 4.53 16 36 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.17 2.72 7.46 -2.91 -0.02 2.69 16 39 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.13 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -70.47 347.95 2.04 -68.43 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.05 Total: 18.41 kcal Atomic # 6 Polarization: -61.21 SS G_CDS: 3.15 Total: -58.06 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.20 Total: -48.52 kcal Atomic # 8 Polarization: -113.91 SS G_CDS: -4.16 Total: -118.07 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 16 Polarization: 95.96 SS G_CDS: -0.24 Total: 95.72 kcal Total: -70.47 2.04 -68.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295196301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.393 kcal (2) G-P(sol) polarization free energy of solvation -70.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds