Wall clock time and date at job start Tue Mar 31 2020 21:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47095 * 334.93933 * 3 2 1 5 5 C 1.35997 * 116.99843 * 180.02562 * 4 3 2 6 6 C 1.38568 * 120.07268 * 359.95772 * 5 4 3 7 7 C 1.38237 * 120.00154 * 180.02562 * 6 5 4 8 8 C 1.38256 * 120.14570 * 359.97438 * 7 6 5 9 9 C 1.38252 * 120.14631 * 0.02562 * 8 7 6 10 10 C 1.38567 * 119.99482 * 359.97438 * 9 8 7 11 11 O 1.35997 * 120.06715 * 180.02562 * 10 9 8 12 12 S 1.52198 * 114.00188 * 90.00334 * 11 10 9 13 13 O 1.42098 * 104.27530 * 191.06955 * 12 11 10 14 14 O 1.42102 * 104.27575 * 318.92685 * 12 11 10 15 15 C 1.81399 * 104.44797 * 74.99502 * 12 11 10 16 16 C 1.53002 * 109.46616 * 179.97438 * 15 12 11 17 17 C 1.52999 * 109.47568 * 300.00035 * 16 15 12 18 18 C 1.52996 * 109.47231 * 60.00522 * 16 15 12 19 19 C 1.50705 * 109.46925 * 180.02562 * 16 15 12 20 20 H 1.08003 * 119.99766 * 0.83491 * 19 16 15 21 21 C 1.37872 * 120.00234 * 180.83740 * 19 16 15 22 22 N 1.31509 * 120.00467 * 194.57831 * 21 19 16 23 23 Si 1.86802 * 119.99965 * 14.58071 * 21 19 16 24 24 H 1.48497 * 109.47568 * 84.45089 * 23 21 19 25 25 H 1.48497 * 109.47205 * 204.45495 * 23 21 19 26 26 H 1.48500 * 109.47019 * 324.45121 * 23 21 19 27 27 H 4.38444 * 5.44488 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.46932 * 214.93798 * 3 2 1 29 29 H 1.08992 * 109.47073 * 94.93861 * 3 2 1 30 30 H 1.07999 * 119.99674 * 0.03928 * 6 5 4 31 31 H 1.07997 * 119.93200 * 180.26673 * 7 6 5 32 32 H 1.07997 * 119.93042 * 179.97438 * 8 7 6 33 33 H 1.07996 * 120.00052 * 180.02562 * 9 8 7 34 34 H 1.08993 * 109.47386 * 300.00083 * 15 12 11 35 35 H 1.08998 * 109.47069 * 60.00645 * 15 12 11 36 36 H 1.08997 * 109.46822 * 70.23338 * 17 16 15 37 37 H 1.08997 * 109.47285 * 190.23216 * 17 16 15 38 38 H 1.08999 * 109.46987 * 310.23359 * 17 16 15 39 39 H 1.09002 * 109.47476 * 59.99449 * 18 16 15 40 40 H 1.08998 * 109.47752 * 179.97438 * 18 16 15 41 41 H 1.09006 * 109.46998 * 299.99624 * 18 16 15 42 42 H 0.96997 * 120.00546 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.2196 0.5707 5 6 4.4713 -1.3801 0.6466 6 6 5.3163 -0.3854 0.1813 7 6 6.6866 -0.5503 0.2587 8 6 7.2172 -1.7064 0.8004 9 6 6.3798 -2.7028 1.2665 10 6 5.0053 -2.5436 1.1918 11 8 4.1801 -3.5226 1.6504 12 16 3.8043 -3.3783 3.1181 13 8 3.1789 -4.6123 3.4426 14 8 5.0124 -2.9803 3.7517 15 6 2.5959 -2.0256 3.1450 16 6 2.1355 -1.7818 4.5836 17 6 1.4891 -3.0542 5.1350 18 6 3.3406 -1.4062 5.4481 19 6 1.1311 -0.6585 4.6060 20 1 0.8392 -0.1766 3.6845 21 6 0.5847 -0.2458 5.8027 22 7 -0.4846 0.5196 5.8083 23 14 1.3636 -0.7741 7.4164 24 1 2.4754 0.1501 7.7554 25 1 0.3428 -0.7368 8.4942 26 1 1.8916 -2.1555 7.2823 27 1 -1.0498 -0.0005 0.0000 28 1 3.0090 0.8433 0.5885 29 1 3.0093 0.0893 -1.0238 30 1 4.9043 0.5189 -0.2417 31 1 7.3442 0.2275 -0.1004 32 1 8.2883 -1.8318 0.8588 33 1 6.7968 -3.6046 1.6896 34 1 3.0562 -1.1193 2.7519 35 1 1.7370 -2.2934 2.5296 36 1 2.2556 -3.8135 5.2893 37 1 1.0013 -2.8321 6.0841 38 1 0.7498 -3.4235 4.4242 39 1 3.8012 -0.4997 5.0553 40 1 3.0126 -1.2320 6.4729 41 1 4.0668 -2.2190 5.4319 42 1 -0.8692 0.8096 6.6502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296970486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:09 Heat of formation + Delta-G solvation = -30.203436 kcal Electronic energy + Delta-G solvation = -28937.927387 eV Core-core repulsion = 24979.760818 eV Total energy + Delta-G solvation = -3958.166569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32831 -39.22688 -37.50296 -36.77140 -36.63858 -35.56921 -33.41664 -31.91846 -30.80798 -30.11985 -27.70761 -27.35532 -26.34708 -24.99403 -23.63108 -22.76458 -20.77404 -19.54074 -18.65236 -18.56118 -17.79865 -17.36343 -16.83945 -16.23074 -16.06844 -15.73103 -15.56660 -15.17311 -14.82473 -14.46074 -14.35576 -13.41904 -13.38134 -13.12279 -13.00670 -12.84312 -12.79919 -12.48964 -12.39113 -11.97588 -11.85167 -11.76848 -11.62697 -11.50529 -11.49636 -11.06193 -10.92654 -10.72416 -10.53177 -10.16907 -10.12956 -10.03125 -9.88966 -9.22657 -8.98549 -8.73251 -8.52001 -8.43366 -6.16519 -4.12613 0.39452 1.03787 1.14310 2.14934 2.48808 2.83629 3.26810 3.33986 3.36605 3.40159 3.48858 4.05851 4.25313 4.35404 4.36983 4.50978 4.57754 4.78474 4.92558 5.01008 5.04465 5.12290 5.13276 5.35514 5.45591 5.59291 5.75917 5.85350 5.91920 6.03635 6.04820 6.14753 6.28036 6.35548 6.40889 6.49960 6.53852 6.73372 6.91798 7.01178 7.16877 7.35428 7.59071 7.65870 8.43452 8.87551 9.48077 10.95994 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.005629 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.078098 B = 4973.339472 C = 6119.507093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.214 4.214 3 C 0.176 3.824 4 O -0.299 6.299 5 C 0.127 3.873 6 C -0.196 4.196 7 C -0.065 4.065 8 C -0.142 4.142 9 C -0.054 4.054 10 C 0.044 3.956 11 O -0.664 6.664 12 S 2.568 3.432 13 O -0.937 6.937 14 O -0.963 6.963 15 C -0.579 4.579 16 C 0.055 3.945 17 C -0.171 4.171 18 C -0.180 4.180 19 C -0.501 4.501 20 H 0.079 0.921 21 C 0.077 3.923 22 N -0.890 5.890 23 Si 0.872 3.128 24 H -0.282 1.282 25 H -0.301 1.301 26 H -0.246 1.246 27 H 0.225 0.775 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.210 -0.305 -14.184 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.214 4.214 3 C 0.102 3.898 4 O -0.213 6.213 5 C 0.079 3.921 6 C -0.215 4.215 7 C -0.083 4.083 8 C -0.160 4.160 9 C -0.074 4.074 10 C 0.002 3.998 11 O -0.622 6.622 12 S 2.668 3.332 13 O -0.935 6.935 14 O -0.961 6.961 15 C -0.710 4.710 16 C 0.053 3.947 17 C -0.229 4.229 18 C -0.237 4.237 19 C -0.539 4.539 20 H 0.097 0.903 21 C -0.126 4.126 22 N -0.527 5.527 23 Si 0.703 3.297 24 H -0.209 1.209 25 H -0.230 1.230 26 H -0.172 1.172 27 H 0.241 0.759 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.268 -1.076 -13.939 18.600 hybrid contribution -0.408 0.480 0.907 1.104 sum 11.860 -0.596 -13.032 17.630 Atomic orbital electron populations 1.25045 0.95898 0.95851 0.98270 1.21902 0.93223 1.03693 1.02589 1.19333 0.85746 0.85853 0.98824 1.86297 1.17703 1.39983 1.77273 1.19088 0.83400 0.93319 0.96296 1.21194 0.94188 0.99516 1.06576 1.21145 0.94239 0.97238 0.95712 1.21002 1.00292 0.93634 1.01090 1.21187 0.89954 1.00353 0.95881 1.17316 0.88462 0.85855 1.08193 1.85747 1.67790 1.55156 1.53516 1.06351 0.76867 0.77586 0.72361 1.93586 1.78150 1.41889 1.79922 1.93570 1.44072 1.84693 1.73763 1.30523 1.15746 1.16569 1.08195 1.18235 0.94352 0.96413 0.85712 1.22689 1.00869 0.96639 1.02657 1.22811 0.98252 1.01901 1.00757 1.20625 1.21933 1.16143 0.95234 0.90341 1.24941 0.93978 0.94731 0.98909 1.69929 1.19335 1.36367 1.27028 0.87476 0.78188 0.80494 0.83493 1.20905 1.22970 1.17180 0.75868 0.88839 0.89387 0.83798 0.84537 0.84323 0.83672 0.85605 0.84987 0.94556 0.91377 0.92258 0.91901 0.93000 0.93207 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 19.25 29.55 0.57 -1.24 16 2 C -0.21 -3.03 13.73 -37.12 -0.51 -3.54 16 3 C 0.18 2.07 5.21 34.37 0.18 2.25 16 4 O -0.30 -4.39 7.09 -34.23 -0.24 -4.63 16 5 C 0.13 1.74 5.83 -39.12 -0.23 1.51 16 6 C -0.20 -1.96 9.04 -39.46 -0.36 -2.32 16 7 C -0.06 -0.55 10.04 -39.58 -0.40 -0.95 16 8 C -0.14 -1.35 10.04 -39.57 -0.40 -1.75 16 9 C -0.05 -0.69 9.04 -39.45 -0.36 -1.04 16 10 C 0.04 0.69 4.81 -39.12 -0.19 0.50 16 11 O -0.66 -11.84 9.84 -54.23 -0.53 -12.37 16 12 S 2.57 51.25 4.20 -107.50 -0.45 50.80 16 13 O -0.94 -20.88 15.94 -67.04 -1.07 -21.95 16 14 O -0.96 -19.49 13.89 -67.04 -0.93 -20.42 16 15 C -0.58 -11.91 3.44 37.16 0.13 -11.78 16 16 C 0.06 1.32 0.52 -155.66 -0.08 1.24 16 17 C -0.17 -4.03 6.95 37.16 0.26 -3.77 16 18 C -0.18 -4.15 7.22 37.16 0.27 -3.88 16 19 C -0.50 -13.61 8.62 -34.44 -0.30 -13.91 16 20 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 21 C 0.08 2.18 5.31 -17.82 -0.09 2.08 16 22 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 23 Si 0.87 21.75 22.79 -169.99 -3.87 17.87 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.25 -5.79 4.67 56.52 0.26 -5.53 16 27 H 0.22 2.30 7.80 -54.10 -0.42 1.87 16 28 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 29 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 30 H 0.14 1.00 6.30 -52.49 -0.33 0.67 16 31 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.13 2.41 6.01 -51.93 -0.31 2.10 16 35 H 0.13 2.64 8.10 -51.92 -0.42 2.22 16 36 H 0.04 0.80 6.21 -51.93 -0.32 0.48 16 37 H 0.07 1.62 4.32 -51.93 -0.22 1.40 16 38 H 0.06 1.33 8.11 -51.93 -0.42 0.91 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.05 1.22 2.28 -51.93 -0.12 1.10 16 41 H 0.05 1.07 5.47 -51.93 -0.28 0.79 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -34.99 344.16 -7.68 -42.66 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.03 Total: 5.11 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: -1.50 Total: -36.60 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.77 Total: -25.66 kcal Atomic # 8 Polarization: -56.60 SS G_CDS: -2.78 Total: -59.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -3.87 Total: 17.87 kcal Atomic # 16 Polarization: 51.25 SS G_CDS: -0.45 Total: 50.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.99 -7.68 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296970486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.461 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds