Wall clock time and date at job start Tue Mar 31 2020 21:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47095 * 334.93933 * 3 2 1 5 5 C 1.35997 * 116.99843 * 180.02562 * 4 3 2 6 6 C 1.38568 * 120.07268 * 359.95772 * 5 4 3 7 7 C 1.38237 * 120.00154 * 180.02562 * 6 5 4 8 8 C 1.38256 * 120.14570 * 359.97438 * 7 6 5 9 9 C 1.38252 * 120.14631 * 0.02562 * 8 7 6 10 10 C 1.38567 * 119.99482 * 359.97438 * 9 8 7 11 11 O 1.35997 * 120.06715 * 180.02562 * 10 9 8 12 12 S 1.52198 * 114.00188 * 90.00334 * 11 10 9 13 13 O 1.42098 * 104.27530 * 191.06955 * 12 11 10 14 14 O 1.42102 * 104.27575 * 318.92685 * 12 11 10 15 15 C 1.81399 * 104.44797 * 74.99502 * 12 11 10 16 16 C 1.53002 * 109.46616 * 179.97438 * 15 12 11 17 17 C 1.52999 * 109.47568 * 300.00035 * 16 15 12 18 18 C 1.52996 * 109.47231 * 60.00522 * 16 15 12 19 19 C 1.50705 * 109.46925 * 180.02562 * 16 15 12 20 20 H 1.08003 * 119.99766 * 0.83491 * 19 16 15 21 21 C 1.37872 * 120.00234 * 180.83740 * 19 16 15 22 22 N 1.31509 * 120.00467 * 194.57831 * 21 19 16 23 23 Si 1.86802 * 119.99965 * 14.58071 * 21 19 16 24 24 H 1.48497 * 109.47568 * 84.45089 * 23 21 19 25 25 H 1.48497 * 109.47205 * 204.45495 * 23 21 19 26 26 H 1.48500 * 109.47019 * 324.45121 * 23 21 19 27 27 H 4.38444 * 5.44488 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.46932 * 214.93798 * 3 2 1 29 29 H 1.08992 * 109.47073 * 94.93861 * 3 2 1 30 30 H 1.07999 * 119.99674 * 0.03928 * 6 5 4 31 31 H 1.07997 * 119.93200 * 180.26673 * 7 6 5 32 32 H 1.07997 * 119.93042 * 179.97438 * 8 7 6 33 33 H 1.07996 * 120.00052 * 180.02562 * 9 8 7 34 34 H 1.08993 * 109.47386 * 300.00083 * 15 12 11 35 35 H 1.08998 * 109.47069 * 60.00645 * 15 12 11 36 36 H 1.08997 * 109.46822 * 70.23338 * 17 16 15 37 37 H 1.08997 * 109.47285 * 190.23216 * 17 16 15 38 38 H 1.08999 * 109.46987 * 310.23359 * 17 16 15 39 39 H 1.09002 * 109.47476 * 59.99449 * 18 16 15 40 40 H 1.08998 * 109.47752 * 179.97438 * 18 16 15 41 41 H 1.09006 * 109.46998 * 299.99624 * 18 16 15 42 42 H 0.96997 * 120.00546 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.2196 0.5707 5 6 4.4713 -1.3801 0.6466 6 6 5.3163 -0.3854 0.1813 7 6 6.6866 -0.5503 0.2587 8 6 7.2172 -1.7064 0.8004 9 6 6.3798 -2.7028 1.2665 10 6 5.0053 -2.5436 1.1918 11 8 4.1801 -3.5226 1.6504 12 16 3.8043 -3.3783 3.1181 13 8 3.1789 -4.6123 3.4426 14 8 5.0124 -2.9803 3.7517 15 6 2.5959 -2.0256 3.1450 16 6 2.1355 -1.7818 4.5836 17 6 1.4891 -3.0542 5.1350 18 6 3.3406 -1.4062 5.4481 19 6 1.1311 -0.6585 4.6060 20 1 0.8392 -0.1766 3.6845 21 6 0.5847 -0.2458 5.8027 22 7 -0.4846 0.5196 5.8083 23 14 1.3636 -0.7741 7.4164 24 1 2.4754 0.1501 7.7554 25 1 0.3428 -0.7368 8.4942 26 1 1.8916 -2.1555 7.2823 27 1 -1.0498 -0.0005 0.0000 28 1 3.0090 0.8433 0.5885 29 1 3.0093 0.0893 -1.0238 30 1 4.9043 0.5189 -0.2417 31 1 7.3442 0.2275 -0.1004 32 1 8.2883 -1.8318 0.8588 33 1 6.7968 -3.6046 1.6896 34 1 3.0562 -1.1193 2.7519 35 1 1.7370 -2.2934 2.5296 36 1 2.2556 -3.8135 5.2893 37 1 1.0013 -2.8321 6.0841 38 1 0.7498 -3.4235 4.4242 39 1 3.8012 -0.4997 5.0553 40 1 3.0126 -1.2320 6.4729 41 1 4.0668 -2.2190 5.4319 42 1 -0.8692 0.8096 6.6502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296970486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:08 Heat of formation + Delta-G solvation = -54.012157 kcal Electronic energy + Delta-G solvation = -28938.959810 eV Core-core repulsion = 24979.760818 eV Total energy + Delta-G solvation = -3959.198992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.39343 -40.33429 -38.55314 -38.44367 -38.25166 -37.18724 -34.42241 -34.04988 -31.65176 -31.01787 -29.19602 -28.47509 -28.20297 -27.10739 -24.64488 -23.65330 -22.09929 -21.25494 -19.83953 -19.52027 -19.18643 -18.52454 -18.16537 -18.07247 -17.39534 -17.14304 -16.82656 -16.54197 -15.89489 -15.49579 -15.40395 -15.16370 -15.04582 -14.82597 -14.49901 -14.24487 -14.07450 -13.95911 -13.74077 -13.54844 -13.30520 -13.27059 -12.85299 -12.78783 -12.69761 -12.67714 -12.45302 -12.34537 -12.03435 -11.90611 -11.80487 -11.58203 -11.15432 -10.96494 -10.69509 -10.50616 -10.06314 -9.40818 -8.34151 -6.32999 -0.96904 0.10118 0.22453 1.09077 1.20128 1.29065 1.34516 1.42172 1.78431 2.29382 2.47789 2.52596 2.54867 2.94429 2.99447 3.33178 3.57941 3.68610 3.78353 3.88445 4.02884 4.08762 4.19664 4.26489 4.29703 4.32339 4.46968 4.52011 4.55236 4.64551 4.71661 4.87245 4.92886 4.95501 5.04723 5.09516 5.26082 5.32275 5.37735 5.48221 5.60587 5.62617 6.13143 6.27803 6.54654 6.68110 7.30235 8.81457 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.005629 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.078098 B = 4973.339472 C = 6119.507093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.239 4.239 3 C 0.166 3.834 4 O -0.327 6.327 5 C 0.110 3.890 6 C -0.194 4.194 7 C -0.047 4.047 8 C -0.135 4.135 9 C -0.072 4.072 10 C -0.009 4.009 11 O -0.663 6.663 12 S 2.588 3.412 13 O -0.968 6.968 14 O -0.967 6.967 15 C -0.580 4.580 16 C 0.048 3.952 17 C -0.177 4.177 18 C -0.184 4.184 19 C -0.496 4.496 20 H 0.048 0.952 21 C 0.030 3.970 22 N -0.932 5.932 23 Si 0.914 3.086 24 H -0.272 1.272 25 H -0.304 1.304 26 H -0.225 1.225 27 H 0.244 0.756 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.177 0.823 31 H 0.183 0.817 32 H 0.175 0.825 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.415 0.462 -15.101 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.239 4.239 3 C 0.094 3.906 4 O -0.242 6.242 5 C 0.062 3.938 6 C -0.212 4.212 7 C -0.065 4.065 8 C -0.153 4.153 9 C -0.092 4.092 10 C -0.052 4.052 11 O -0.622 6.622 12 S 2.689 3.311 13 O -0.967 6.967 14 O -0.965 6.965 15 C -0.710 4.710 16 C 0.046 3.954 17 C -0.234 4.234 18 C -0.240 4.240 19 C -0.535 4.535 20 H 0.066 0.934 21 C -0.169 4.169 22 N -0.571 5.571 23 Si 0.743 3.257 24 H -0.199 1.199 25 H -0.233 1.233 26 H -0.149 1.149 27 H 0.260 0.740 28 H 0.125 0.875 29 H 0.144 0.856 30 H 0.194 0.806 31 H 0.200 0.800 32 H 0.192 0.808 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.473 -0.316 -14.849 21.448 hybrid contribution -1.305 0.333 0.968 1.659 sum 14.168 0.017 -13.881 19.835 Atomic orbital electron populations 1.25812 0.97038 0.95775 0.98433 1.22773 0.94676 1.03839 1.02635 1.19728 0.84392 0.85375 1.01125 1.86230 1.18742 1.41272 1.77942 1.19366 0.83444 0.93819 0.97129 1.21687 0.94668 0.99447 1.05402 1.21752 0.94116 0.97537 0.93103 1.21506 1.01720 0.92748 0.99355 1.21492 0.89347 1.01691 0.96642 1.17977 0.89339 0.86645 1.11196 1.85722 1.68556 1.56024 1.51894 1.05706 0.76158 0.76430 0.72842 1.93536 1.78785 1.42998 1.81351 1.93535 1.43767 1.84569 1.74661 1.30461 1.16337 1.18110 1.06047 1.18215 0.94059 0.95106 0.88060 1.22718 1.01315 0.96950 1.02418 1.22816 0.98090 1.02953 1.00182 1.20785 1.22222 1.16536 0.93956 0.93371 1.25608 0.94269 0.95026 1.02027 1.70040 1.20942 1.38336 1.27819 0.86749 0.77629 0.81567 0.79710 1.19888 1.23295 1.14918 0.73965 0.87485 0.85603 0.80622 0.79992 0.80759 0.83489 0.84532 0.85463 0.93319 0.91883 0.92214 0.90992 0.93428 0.91778 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 19.25 74.32 1.43 -2.86 16 2 C -0.24 -6.85 13.73 31.13 0.43 -6.42 16 3 C 0.17 3.71 5.21 70.18 0.37 4.07 16 4 O -0.33 -9.44 7.09 -79.65 -0.56 -10.01 16 5 C 0.11 2.84 5.83 22.57 0.13 2.98 16 6 C -0.19 -3.13 9.04 22.35 0.20 -2.93 16 7 C -0.05 -0.55 10.04 22.27 0.22 -0.33 16 8 C -0.14 -2.00 10.04 22.28 0.22 -1.78 16 9 C -0.07 -1.69 9.04 22.35 0.20 -1.49 16 10 C -0.01 -0.28 4.81 22.57 0.11 -0.17 16 11 O -0.66 -23.75 9.84 -60.53 -0.60 -24.35 16 12 S 2.59 102.81 4.20 -56.49 -0.24 102.57 16 13 O -0.97 -43.37 15.94 -118.57 -1.89 -45.26 16 14 O -0.97 -38.14 13.89 -118.57 -1.65 -39.79 16 15 C -0.58 -24.01 3.44 71.98 0.25 -23.77 16 16 C 0.05 2.27 0.52 -52.93 -0.03 2.24 16 17 C -0.18 -8.28 6.95 71.98 0.50 -7.78 16 18 C -0.18 -8.18 7.22 71.98 0.52 -7.66 16 19 C -0.50 -27.46 8.62 25.60 0.22 -27.23 16 20 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 21 C 0.03 1.68 5.31 84.65 0.45 2.13 16 22 N -0.93 -56.68 13.96 21.44 0.30 -56.38 16 23 Si 0.91 44.30 22.79 68.60 1.56 45.86 16 24 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 26 H -0.22 -10.06 4.67 99.48 0.46 -9.60 16 27 H 0.24 5.18 7.80 -4.43 -0.03 5.14 16 28 H 0.11 2.01 7.66 -2.39 -0.02 2.00 16 29 H 0.13 1.73 7.66 -2.39 -0.02 1.72 16 30 H 0.18 1.59 6.30 -2.91 -0.02 1.57 16 31 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 32 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.14 5.26 6.01 -2.39 -0.01 5.25 16 35 H 0.13 5.29 8.10 -2.39 -0.02 5.27 16 36 H 0.05 2.13 6.21 -2.39 -0.01 2.12 16 37 H 0.06 2.97 4.32 -2.39 -0.01 2.96 16 38 H 0.06 2.72 8.11 -2.39 -0.02 2.70 16 39 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.05 2.15 2.28 -2.39 -0.01 2.14 16 41 H 0.06 2.66 5.47 -2.38 -0.01 2.64 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -78.13 344.16 2.96 -75.16 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.81 Total: 23.18 kcal Atomic # 6 Polarization: -76.22 SS G_CDS: 5.23 Total: -70.99 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.30 Total: -56.38 kcal Atomic # 8 Polarization: -114.71 SS G_CDS: -4.70 Total: -119.40 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.56 Total: 45.86 kcal Atomic # 16 Polarization: 102.81 SS G_CDS: -0.24 Total: 102.57 kcal Total: -78.13 2.96 -75.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296970486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.151 kcal (2) G-P(sol) polarization free energy of solvation -78.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds