Wall clock time and date at job start Tue Mar 31 2020 20:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35999 * 117.00096 * 2 1 4 4 C 1.38035 * 119.98695 * 359.97438 * 3 2 1 5 5 C 1.40039 * 119.81938 * 180.02562 * 4 3 2 6 6 C 1.46865 * 120.09463 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99931 * 174.08706 * 6 5 4 8 8 C 1.40008 * 119.80998 * 0.27237 * 5 4 3 9 9 N 1.48017 * 120.01557 * 179.70239 * 8 5 4 10 10 O 1.21799 * 119.99822 * 305.53718 * 9 8 5 11 11 O 1.21795 * 119.99802 * 125.53183 * 9 8 5 12 12 C 1.37681 * 119.97010 * 359.40474 * 8 5 4 13 13 C 1.38911 * 120.17978 * 0.62389 * 12 8 5 14 14 O 1.35749 * 119.90547 * 179.69724 * 13 12 8 15 15 C 1.42905 * 116.99790 * 359.97438 * 14 13 12 16 16 C 1.50702 * 109.47192 * 179.97438 * 15 14 13 17 17 O 1.21286 * 119.99786 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00122 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00196 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47137 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00454 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99748 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00434 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99712 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47116 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47030 * 120.00259 * 24 22 20 27 27 H 1.48507 * 109.46850 * 239.99970 * 24 22 20 28 28 H 1.09002 * 109.47348 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47193 * 300.00111 * 1 2 3 30 30 H 1.08995 * 109.47294 * 59.99895 * 1 2 3 31 31 H 1.07996 * 120.09345 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.99625 * 354.36365 * 6 5 4 33 33 H 1.08004 * 119.90961 * 180.31495 * 12 8 5 34 34 H 1.08990 * 109.47306 * 300.00212 * 15 14 13 35 35 H 1.09003 * 109.46727 * 59.99926 * 15 14 13 36 36 H 0.97004 * 119.99629 * 0.02562 * 18 16 15 37 37 H 1.08999 * 109.46839 * 299.99837 * 19 18 16 38 38 H 1.08998 * 109.47083 * 59.99191 * 19 18 16 39 39 H 0.96996 * 120.00589 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2944 2.3693 -0.0005 5 6 1.9339 3.6151 -0.0011 6 6 1.1396 4.8505 -0.0011 7 8 1.6906 5.9257 0.1067 8 6 3.3324 3.6797 -0.0068 9 7 4.0130 4.9941 -0.0141 10 8 3.7451 5.8138 -0.8742 11 8 4.8407 5.2560 0.8401 12 6 4.0745 2.5200 0.0004 13 6 3.4394 1.2845 0.0004 14 8 4.1765 0.1446 0.0014 15 6 5.5980 0.2913 0.0018 16 6 6.2436 -1.0705 0.0035 17 8 5.5542 -2.0683 0.0038 18 7 7.5869 -1.1795 0.0047 19 6 8.2144 -2.5032 0.0058 20 6 9.7134 -2.3485 0.0077 21 1 10.1546 -1.3628 0.0076 22 6 10.5217 -3.4655 0.0095 23 7 9.9846 -4.6659 0.0101 24 14 12.3799 -3.2738 0.0125 25 1 12.7285 -1.8303 0.0119 26 1 12.9421 -3.9189 1.2262 27 1 12.9461 -3.9198 -1.1989 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2159 2.3143 -0.0005 32 1 0.0646 4.8013 -0.0925 33 1 5.1533 2.5709 0.0011 34 1 5.9071 0.8391 -0.8883 35 1 5.9063 0.8403 0.8916 36 1 8.1382 -0.3813 0.0049 37 1 7.9050 -3.0512 0.8958 38 1 7.9064 -3.0521 -0.8841 39 1 10.5532 -5.4518 0.0117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314299250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:23 Heat of formation + Delta-G solvation = -101.767612 kcal Electronic energy + Delta-G solvation = -28274.823302 eV Core-core repulsion = 23767.260263 eV Total energy + Delta-G solvation = -4507.563039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.47372 -41.28980 -39.78815 -39.47606 -38.45265 -37.24235 -36.57473 -34.38094 -32.51282 -32.01561 -31.67254 -29.29467 -28.28396 -26.84998 -26.80064 -24.54638 -23.38022 -22.47817 -21.88351 -20.15083 -19.85357 -18.91254 -18.79039 -18.31505 -17.46957 -17.31558 -16.95734 -16.85109 -16.31646 -16.10347 -15.76699 -15.62552 -15.18441 -15.00123 -14.93169 -14.35789 -14.32667 -14.02589 -13.49912 -13.17472 -13.04882 -12.56522 -12.20594 -12.08035 -12.07896 -11.95585 -11.67341 -11.46208 -11.30227 -11.19935 -11.04346 -10.97315 -10.48219 -10.40444 -9.86288 -9.49607 -9.34607 -8.86182 -8.75046 -8.10199 -6.25716 -4.33592 -0.49488 0.00827 0.71128 1.07599 1.66873 2.27029 2.46930 2.68866 2.99496 3.18693 3.26213 3.28884 3.31584 3.61642 3.83540 4.00389 4.11814 4.27368 4.42429 4.50385 4.51435 4.60922 4.65412 4.74351 4.86121 4.86864 5.02433 5.07206 5.11013 5.16218 5.39285 6.13872 6.28856 6.66087 6.74007 7.13057 7.19285 7.36923 7.46353 7.52852 7.84517 8.37466 8.61408 8.84373 9.33200 10.84383 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.002397 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.807469 B =11679.708909 C =13455.211007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.285 6.285 3 C 0.131 3.869 4 C -0.121 4.121 5 C -0.143 4.143 6 C 0.371 3.629 7 O -0.428 6.428 8 C 0.025 3.975 9 N 0.023 4.977 10 O -0.108 6.108 11 O -0.158 6.158 12 C -0.146 4.146 13 C 0.156 3.844 14 O -0.255 6.255 15 C 0.027 3.973 16 C 0.502 3.498 17 O -0.528 6.528 18 N -0.704 5.704 19 C 0.251 3.749 20 C -0.546 4.546 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.884 5.884 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.167 0.833 32 H 0.125 0.875 33 H 0.163 0.837 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.774 15.494 -0.466 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.197 6.197 3 C 0.084 3.916 4 C -0.141 4.141 5 C -0.146 4.146 6 C 0.226 3.774 7 O -0.299 6.299 8 C -0.057 4.057 9 N 0.552 4.448 10 O -0.337 6.337 11 O -0.372 6.372 12 C -0.166 4.166 13 C 0.106 3.894 14 O -0.165 6.165 15 C -0.051 4.051 16 C 0.284 3.716 17 O -0.404 6.404 18 N -0.354 5.354 19 C 0.131 3.869 20 C -0.584 4.584 21 H 0.083 0.917 22 C -0.140 4.140 23 N -0.521 5.521 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.184 0.816 32 H 0.141 0.859 33 H 0.181 0.819 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.191 13.996 -0.340 26.238 hybrid contribution 1.423 0.771 -0.005 1.618 sum -20.768 14.767 -0.345 25.485 Atomic orbital electron populations 1.23309 0.77347 1.05438 1.01576 1.86389 1.21953 1.24025 1.87292 1.18298 0.89047 0.86104 0.98153 1.21197 1.01052 0.88851 1.02996 1.20441 0.90846 0.97554 1.05740 1.24064 0.95399 0.85872 0.72038 1.90726 1.75642 1.31202 1.32282 1.20703 0.91909 0.83548 1.09495 1.43268 0.99727 1.01904 0.99914 1.94565 1.66540 1.42284 1.30311 1.94574 1.27418 1.83364 1.31862 1.20671 1.02027 0.88851 1.05082 1.18275 0.88844 0.85595 0.96685 1.86353 1.18346 1.25482 1.86311 1.22960 0.78509 0.99648 1.03996 1.19652 0.83766 0.88973 0.79208 1.90745 1.62541 1.37912 1.49241 1.46374 1.04246 1.12575 1.72238 1.19209 0.92015 0.77557 0.98123 1.21222 0.90187 0.93386 1.53644 0.91684 1.24954 0.99582 0.94904 0.94523 1.69972 1.35820 0.97728 1.48595 0.86334 0.84213 0.78380 0.77836 1.19561 1.20711 1.20730 0.87084 0.92009 0.91957 0.81600 0.85926 0.81929 0.88729 0.88484 0.77393 0.95158 0.95176 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.81 101.05 0.99 1.07 16 2 O -0.28 -2.74 10.27 -34.41 -0.35 -3.09 16 3 C 0.13 1.20 6.69 -39.19 -0.26 0.94 16 4 C -0.12 -0.72 8.78 -38.98 -0.34 -1.06 16 5 C -0.14 -1.17 5.87 -105.07 -0.62 -1.78 16 6 C 0.37 2.68 11.33 34.22 0.39 3.07 16 7 O -0.43 -5.17 13.94 -18.69 -0.26 -5.43 16 8 C 0.03 0.28 6.27 -79.49 -0.50 -0.22 16 9 N 0.02 0.31 3.47 34.19 0.12 0.43 16 10 O -0.11 -1.58 16.40 -37.13 -0.61 -2.18 16 11 O -0.16 -2.31 19.17 -29.46 -0.56 -2.88 16 12 C -0.15 -1.49 8.83 -39.54 -0.35 -1.84 16 13 C 0.16 1.72 6.71 -38.87 -0.26 1.46 16 14 O -0.25 -3.59 9.43 -46.64 -0.44 -4.03 16 15 C 0.03 0.35 5.21 36.01 0.19 0.54 16 16 C 0.50 9.35 7.91 -10.99 -0.09 9.26 16 17 O -0.53 -12.41 16.50 -14.36 -0.24 -12.64 16 18 N -0.70 -13.68 5.55 -61.48 -0.34 -14.02 16 19 C 0.25 6.35 5.43 -5.20 -0.03 6.32 16 20 C -0.55 -14.24 9.28 -34.44 -0.32 -14.56 16 21 H 0.07 1.58 7.60 -52.49 -0.40 1.18 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.88 -25.38 13.29 55.43 0.74 -24.64 16 24 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.13 7.66 -51.93 -0.40 -0.26 16 30 H 0.06 0.13 7.66 -51.93 -0.40 -0.27 16 31 H 0.17 0.26 6.28 -52.49 -0.33 -0.07 16 32 H 0.12 0.23 8.06 -52.49 -0.42 -0.19 16 33 H 0.16 1.44 6.27 -52.48 -0.33 1.11 16 34 H 0.09 0.92 7.65 -51.93 -0.40 0.53 16 35 H 0.10 0.96 7.65 -51.93 -0.40 0.56 16 36 H 0.39 6.27 8.32 -40.82 -0.34 5.93 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -37.43 356.35 -6.71 -44.14 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -3.81 Total: -1.15 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.29 Total: 4.81 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.51 Total: -38.23 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -2.46 Total: -30.25 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.43 -6.71 -44.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314299250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.629 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds