Wall clock time and date at job start Tue Mar 31 2020 20:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35999 * 117.00096 * 2 1 4 4 C 1.38035 * 119.98695 * 359.97438 * 3 2 1 5 5 C 1.40039 * 119.81938 * 180.02562 * 4 3 2 6 6 C 1.46865 * 120.09463 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99931 * 174.08706 * 6 5 4 8 8 C 1.40008 * 119.80998 * 0.27237 * 5 4 3 9 9 N 1.48017 * 120.01557 * 179.70239 * 8 5 4 10 10 O 1.21799 * 119.99822 * 305.53718 * 9 8 5 11 11 O 1.21795 * 119.99802 * 125.53183 * 9 8 5 12 12 C 1.37681 * 119.97010 * 359.40474 * 8 5 4 13 13 C 1.38911 * 120.17978 * 0.62389 * 12 8 5 14 14 O 1.35749 * 119.90547 * 179.69724 * 13 12 8 15 15 C 1.42905 * 116.99790 * 359.97438 * 14 13 12 16 16 C 1.50702 * 109.47192 * 179.97438 * 15 14 13 17 17 O 1.21286 * 119.99786 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00122 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00196 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47137 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00454 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99748 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00434 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99712 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47116 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47030 * 120.00259 * 24 22 20 27 27 H 1.48507 * 109.46850 * 239.99970 * 24 22 20 28 28 H 1.09002 * 109.47348 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47193 * 300.00111 * 1 2 3 30 30 H 1.08995 * 109.47294 * 59.99895 * 1 2 3 31 31 H 1.07996 * 120.09345 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.99625 * 354.36365 * 6 5 4 33 33 H 1.08004 * 119.90961 * 180.31495 * 12 8 5 34 34 H 1.08990 * 109.47306 * 300.00212 * 15 14 13 35 35 H 1.09003 * 109.46727 * 59.99926 * 15 14 13 36 36 H 0.97004 * 119.99629 * 0.02562 * 18 16 15 37 37 H 1.08999 * 109.46839 * 299.99837 * 19 18 16 38 38 H 1.08998 * 109.47083 * 59.99191 * 19 18 16 39 39 H 0.96996 * 120.00589 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2944 2.3693 -0.0005 5 6 1.9339 3.6151 -0.0011 6 6 1.1396 4.8505 -0.0011 7 8 1.6906 5.9257 0.1067 8 6 3.3324 3.6797 -0.0068 9 7 4.0130 4.9941 -0.0141 10 8 3.7451 5.8138 -0.8742 11 8 4.8407 5.2560 0.8401 12 6 4.0745 2.5200 0.0004 13 6 3.4394 1.2845 0.0004 14 8 4.1765 0.1446 0.0014 15 6 5.5980 0.2913 0.0018 16 6 6.2436 -1.0705 0.0035 17 8 5.5542 -2.0683 0.0038 18 7 7.5869 -1.1795 0.0047 19 6 8.2144 -2.5032 0.0058 20 6 9.7134 -2.3485 0.0077 21 1 10.1546 -1.3628 0.0076 22 6 10.5217 -3.4655 0.0095 23 7 9.9846 -4.6659 0.0101 24 14 12.3799 -3.2738 0.0125 25 1 12.7285 -1.8303 0.0119 26 1 12.9421 -3.9189 1.2262 27 1 12.9461 -3.9198 -1.1989 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2159 2.3143 -0.0005 32 1 0.0646 4.8013 -0.0925 33 1 5.1533 2.5709 0.0011 34 1 5.9071 0.8391 -0.8883 35 1 5.9063 0.8403 0.8916 36 1 8.1382 -0.3813 0.0049 37 1 7.9050 -3.0512 0.8958 38 1 7.9064 -3.0521 -0.8841 39 1 10.5532 -5.4518 0.0117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314299250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:22 Heat of formation + Delta-G solvation = -128.501090 kcal Electronic energy + Delta-G solvation = -28275.982552 eV Core-core repulsion = 23767.260263 eV Total energy + Delta-G solvation = -4508.722289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.37832 -42.08598 -40.86995 -40.23986 -39.59531 -38.03041 -37.59055 -36.23695 -34.45261 -32.70959 -32.45810 -30.65520 -28.90962 -28.39296 -27.53150 -25.40558 -24.70647 -23.71813 -22.57971 -21.69061 -20.74561 -19.89744 -19.55805 -19.27558 -18.81374 -18.22159 -17.85163 -17.76374 -17.46882 -17.08541 -16.84261 -16.81162 -16.20704 -16.07002 -15.78412 -15.59882 -15.55418 -14.83832 -14.51950 -14.20933 -14.16875 -13.99403 -13.68748 -13.52090 -12.93070 -12.81439 -12.77822 -12.57470 -12.49158 -12.30749 -12.28877 -12.24396 -12.23805 -11.49232 -11.11472 -10.97051 -10.85390 -10.48582 -9.97271 -9.48441 -8.31928 -6.48424 -1.27446 -0.68329 -0.20387 0.21890 1.08351 1.29834 1.43488 1.44105 1.50488 1.57469 1.94956 2.05857 2.33157 2.57196 2.82338 3.03707 3.04784 3.25624 3.46554 3.62793 3.85201 3.90984 3.91711 3.95724 4.07179 4.16842 4.41812 4.44723 4.49645 4.78285 4.83381 5.04779 5.16883 5.18940 5.38227 5.52811 5.65435 5.79849 6.12328 6.16723 6.39320 6.60629 6.73678 7.18178 7.32799 8.80388 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.002397 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.807469 B =11679.708909 C =13455.211007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.318 6.318 3 C 0.131 3.869 4 C -0.088 4.088 5 C -0.139 4.139 6 C 0.378 3.622 7 O -0.481 6.481 8 C -0.004 4.004 9 N 0.027 4.973 10 O -0.125 6.125 11 O -0.187 6.187 12 C -0.140 4.140 13 C 0.129 3.871 14 O -0.288 6.288 15 C 0.041 3.959 16 C 0.499 3.501 17 O -0.584 6.584 18 N -0.698 5.698 19 C 0.266 3.734 20 C -0.555 4.555 21 H 0.087 0.913 22 C 0.005 3.995 23 N -0.930 5.930 24 Si 0.984 3.016 25 H -0.253 1.253 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.221 0.779 32 H 0.193 0.807 33 H 0.170 0.830 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.413 0.587 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.432 17.466 -0.581 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.230 6.230 3 C 0.083 3.917 4 C -0.107 4.107 5 C -0.142 4.142 6 C 0.237 3.763 7 O -0.354 6.354 8 C -0.086 4.086 9 N 0.552 4.448 10 O -0.354 6.354 11 O -0.398 6.398 12 C -0.160 4.160 13 C 0.081 3.919 14 O -0.199 6.199 15 C -0.036 4.036 16 C 0.285 3.715 17 O -0.464 6.464 18 N -0.349 5.349 19 C 0.144 3.856 20 C -0.593 4.593 21 H 0.105 0.895 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.807 3.193 25 H -0.176 1.176 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.131 0.869 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.238 0.762 32 H 0.209 0.791 33 H 0.187 0.813 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.250 0.750 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.852 16.037 -0.442 28.745 hybrid contribution 1.693 0.086 0.017 1.695 sum -22.159 16.123 -0.425 27.408 Atomic orbital electron populations 1.23719 0.74599 1.06642 1.04124 1.86370 1.24973 1.24608 1.87079 1.18584 0.88613 0.87154 0.97328 1.21660 1.03128 0.86336 0.99578 1.20963 0.89793 0.99338 1.04077 1.25110 0.97685 0.84117 0.69382 1.90737 1.76906 1.32930 1.34806 1.20901 0.93231 0.81869 1.12578 1.43615 0.99307 1.02740 0.99182 1.94539 1.66668 1.43646 1.30514 1.94551 1.28644 1.84201 1.32356 1.20660 1.02473 0.88406 1.04430 1.18456 0.89604 0.84721 0.99156 1.86282 1.18555 1.27469 1.87623 1.22806 0.78501 0.95173 1.07170 1.20637 0.83003 0.90979 0.76907 1.90712 1.63640 1.40689 1.51362 1.46027 1.05216 1.11209 1.72456 1.18625 0.92619 0.79796 0.94575 1.21629 0.90347 0.94418 1.52902 0.89548 1.26041 1.05186 0.94436 0.93866 1.70128 1.37980 0.98842 1.49912 0.85124 0.77314 0.79222 0.77642 1.17608 1.20529 1.20533 0.86928 0.89396 0.89242 0.76221 0.79099 0.81257 0.85358 0.85244 0.75026 0.99009 0.98999 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.32 -5.44 10.27 -79.51 -0.82 -6.26 16 3 C 0.13 2.05 6.69 22.52 0.15 2.21 16 4 C -0.09 -0.64 8.78 22.66 0.20 -0.44 16 5 C -0.14 -1.81 5.87 -20.15 -0.12 -1.92 16 6 C 0.38 3.99 11.33 70.08 0.79 4.79 16 7 O -0.48 -10.77 13.94 20.12 0.28 -10.49 16 8 C 0.00 -0.08 6.27 36.67 0.23 0.15 16 9 N 0.03 0.73 3.47 -45.76 -0.16 0.57 16 10 O -0.12 -3.67 16.40 26.22 0.43 -3.24 16 11 O -0.19 -5.58 19.17 18.89 0.36 -5.21 16 12 C -0.14 -2.68 8.83 22.30 0.20 -2.49 16 13 C 0.13 2.68 6.71 22.73 0.15 2.84 16 14 O -0.29 -8.02 9.43 -64.27 -0.61 -8.62 16 15 C 0.04 1.01 5.21 71.24 0.37 1.38 16 16 C 0.50 19.03 7.91 87.66 0.69 19.72 16 17 O -0.58 -28.90 16.50 15.99 0.26 -28.63 16 18 N -0.70 -27.59 5.55 -466.80 -2.59 -30.18 16 19 C 0.27 14.12 5.43 85.63 0.46 14.58 16 20 C -0.56 -29.24 9.28 25.60 0.24 -29.00 16 21 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 22 C 0.00 0.25 5.46 84.66 0.46 0.71 16 23 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 24 Si 0.98 41.56 29.54 68.60 2.03 43.59 16 25 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 26 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 -0.05 7.66 -2.39 -0.02 -0.07 16 30 H 0.09 -0.07 7.66 -2.39 -0.02 -0.09 16 31 H 0.22 -0.92 6.28 -2.91 -0.02 -0.94 16 32 H 0.19 -0.59 8.06 -2.91 -0.02 -0.61 16 33 H 0.17 2.79 6.27 -2.91 -0.02 2.78 16 34 H 0.13 2.26 7.65 -2.39 -0.02 2.24 16 35 H 0.13 2.32 7.65 -2.39 -0.02 2.30 16 36 H 0.41 12.84 8.32 -92.71 -0.77 12.07 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -90.23 356.35 4.79 -85.44 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 0.37 Total: 4.25 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 4.95 Total: 13.65 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -2.46 Total: -84.47 kcal Atomic # 8 Polarization: -62.37 SS G_CDS: -0.09 Total: -62.46 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -90.23 4.79 -85.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314299250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.059 kcal (2) G-P(sol) polarization free energy of solvation -90.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds