Wall clock time and date at job start Tue Mar 31 2020 21:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00025 * 2 1 4 4 H 1.48499 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47085 * 299.99695 * 3 2 1 6 6 H 1.48510 * 109.47416 * 59.99713 * 3 2 1 7 7 C 1.38805 * 119.99636 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99969 * 162.55032 * 7 2 1 9 9 N 1.36929 * 120.00361 * 342.82363 * 7 2 1 10 10 C 1.46974 * 120.59509 * 151.29541 * 9 7 2 11 11 C 1.53820 * 108.39820 * 124.75943 * 10 9 7 12 12 N 1.46962 * 108.57597 * 49.63711 * 11 10 9 13 13 S 1.65603 * 120.59149 * 124.62792 * 12 11 10 14 14 O 1.42102 * 106.40326 * 23.55731 * 13 12 11 15 15 O 1.42099 * 106.40260 * 156.47770 * 13 12 11 16 16 C 1.76196 * 107.21844 * 270.01913 * 13 12 11 17 17 C 1.37978 * 119.88303 * 114.99522 * 16 13 12 18 18 C 1.38240 * 120.34866 * 180.02562 * 17 16 13 19 19 C 1.38390 * 119.77115 * 0.20925 * 18 17 16 20 20 C 1.37691 * 119.97705 * 359.92675 * 19 18 17 21 21 C 1.38929 * 120.78270 * 359.41994 * 20 19 18 22 22 O 1.36129 * 111.22254 * 180.83131 * 21 20 19 23 23 C 1.43774 * 109.30438 * 341.23961 * 22 21 20 24 24 C 1.51646 * 132.17968 * 179.41295 * 20 19 18 25 25 C 1.46968 * 118.81581 * 304.64307 * 12 11 10 26 26 C 1.46965 * 120.59652 * 331.57601 * 9 7 2 27 27 H 0.96999 * 120.00084 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.60887 * 244.54084 * 10 9 7 29 29 H 1.08995 * 109.60670 * 5.05586 * 10 9 7 30 30 H 1.09001 * 109.73895 * 289.85122 * 11 10 9 31 31 H 1.08990 * 109.67187 * 169.38695 * 11 10 9 32 32 H 1.08006 * 119.82218 * 0.06336 * 17 16 13 33 33 H 1.08006 * 120.11104 * 180.22876 * 18 17 16 34 34 H 1.08001 * 120.00830 * 179.90832 * 19 18 17 35 35 H 1.09002 * 110.74750 * 269.25615 * 23 22 21 36 36 H 1.08996 * 110.90506 * 145.97488 * 23 22 21 37 37 H 1.09002 * 110.93712 * 313.66861 * 24 20 19 38 38 H 1.09001 * 110.93580 * 77.31344 * 24 20 19 39 39 H 1.08994 * 109.61264 * 295.48649 * 25 12 11 40 40 H 1.08998 * 109.74784 * 175.05913 * 25 12 11 41 41 H 1.09002 * 109.60747 * 354.94771 * 26 9 7 42 42 H 1.08996 * 109.61105 * 115.28687 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2238 -0.2799 9 7 1.3713 -2.3614 0.3512 10 6 1.8065 -3.6519 -0.2013 11 6 2.1101 -4.6033 0.9686 12 7 0.9731 -4.5785 1.8995 13 16 0.1998 -5.9804 2.3227 14 8 1.1325 -7.0319 2.1142 15 8 -0.4243 -5.7320 3.5750 16 6 -1.1001 -6.2306 1.1599 17 6 -1.0634 -7.3178 0.3112 18 6 -2.0779 -7.5231 -0.6052 19 6 -3.1331 -6.6303 -0.6737 20 6 -3.1703 -5.5431 0.1704 21 6 -2.1636 -5.3335 1.1046 22 8 -2.4035 -4.2169 1.8454 23 6 -3.3541 -3.3857 1.1581 24 6 -4.1636 -4.4078 0.3253 25 6 0.5344 -3.2874 2.4477 26 6 0.2343 -2.3368 1.2821 27 1 -0.4850 0.8400 -0.0004 28 1 1.0133 -4.0708 -0.8205 29 1 2.7052 -3.5086 -0.8010 30 1 3.0126 -4.2758 1.4847 31 1 2.2517 -5.6158 0.5909 32 1 -0.2381 -8.0125 0.3636 33 1 -2.0472 -8.3775 -1.2652 34 1 -3.9269 -6.7862 -1.3892 35 1 -2.8456 -2.6740 0.5077 36 1 -4.0001 -2.8664 1.8660 37 1 -4.4344 -3.9920 -0.6453 38 1 -5.0503 -4.7372 0.8669 39 1 1.3247 -2.8663 3.0690 40 1 -0.3656 -3.4281 3.0461 41 1 0.0946 -1.3247 1.6622 42 1 -0.6687 -2.6613 0.7652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331860667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:52 Heat of formation + Delta-G solvation = -37.587597 kcal Electronic energy + Delta-G solvation = -29185.738782 eV Core-core repulsion = 25259.544763 eV Total energy + Delta-G solvation = -3926.194019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15353 -37.62766 -37.48215 -36.84255 -35.52843 -33.79023 -32.87901 -31.06940 -30.31238 -30.11240 -29.29192 -26.37339 -23.81464 -23.22310 -22.82844 -22.65119 -22.02259 -19.96323 -18.53278 -17.92447 -17.46971 -16.98196 -16.44513 -16.08240 -16.06918 -15.41786 -15.02731 -14.77862 -14.01394 -13.80568 -13.68069 -13.60636 -13.48375 -13.35305 -13.07706 -12.91484 -12.75701 -12.28932 -12.03266 -11.95487 -11.90059 -11.75524 -11.57435 -11.32141 -11.11604 -10.92026 -10.82174 -10.69659 -10.51891 -10.36602 -10.20839 -9.93735 -9.70318 -9.32263 -8.71145 -8.46759 -8.26036 -6.68813 -5.85328 -3.28253 0.65408 0.91529 1.24101 3.09321 3.25141 3.33334 3.42015 3.44024 3.50521 4.03237 4.28984 4.44541 4.45550 4.65108 4.84603 5.00911 5.04242 5.20636 5.24254 5.28045 5.32002 5.51363 5.54937 5.63367 5.74770 5.83718 5.85580 5.93213 6.02701 6.08427 6.11653 6.24297 6.33795 6.45397 6.45772 6.49209 6.69471 6.85554 6.97319 7.01272 7.32305 7.57508 7.74291 8.37701 9.14314 9.77069 10.34804 11.22312 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.005069 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.459574 B = 5522.943567 C = 6473.398564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.132 3.868 11 C 0.104 3.896 12 N -0.982 5.982 13 S 2.692 3.308 14 O -0.969 6.969 15 O -0.956 6.956 16 C -0.693 4.693 17 C 0.004 3.996 18 C -0.173 4.173 19 C -0.022 4.022 20 C -0.196 4.196 21 C 0.216 3.784 22 O -0.286 6.286 23 C 0.047 3.953 24 C -0.108 4.108 25 C 0.096 3.904 26 C 0.162 3.838 27 H 0.253 0.747 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -11.612 -0.578 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.004 3.996 11 C -0.023 4.023 12 N -0.822 5.822 13 S 2.781 3.219 14 O -0.959 6.959 15 O -0.946 6.946 16 C -0.779 4.779 17 C -0.015 4.015 18 C -0.192 4.192 19 C -0.040 4.040 20 C -0.197 4.197 21 C 0.167 3.833 22 O -0.198 6.198 23 C -0.027 4.027 24 C -0.145 4.145 25 C -0.030 4.030 26 C 0.035 3.965 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.336 -11.890 0.334 13.975 hybrid contribution -0.313 1.119 -0.901 1.470 sum -7.648 -10.771 -0.567 13.223 Atomic orbital electron populations 1.70016 1.05279 1.25377 1.54132 1.25029 0.95305 0.98419 1.00856 0.86221 0.79439 0.83852 0.77226 1.20253 1.21833 1.21535 1.19253 0.92741 0.84714 1.41236 0.91530 1.43953 1.36594 1.01488 1.49177 1.21366 0.98177 0.87498 0.92583 1.22124 0.87896 1.00364 0.91885 1.57363 1.43117 1.21907 1.59790 1.01930 0.73239 0.72728 0.73958 1.93516 1.61073 1.54695 1.86655 1.93567 1.77325 1.84946 1.38773 1.30125 1.17510 1.05946 1.24342 1.20715 0.97507 0.93045 0.90236 1.21088 0.95631 1.01105 1.01371 1.20529 0.97085 0.91253 0.95112 1.20873 0.97811 0.99882 1.01154 1.18835 0.91053 0.85864 0.87549 1.86952 1.61164 1.29328 1.42339 1.24074 0.89539 0.92874 0.96211 1.21820 0.97623 0.92994 1.02100 1.22349 0.99505 0.83000 0.98155 1.21149 0.88908 0.98437 0.88032 0.93727 0.96131 0.91611 0.91102 0.90397 0.83465 0.84766 0.85322 0.88394 0.87007 0.88713 0.89201 0.91710 0.89877 0.88520 0.95949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.67 11.20 55.49 0.62 -24.05 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.55 9.57 -15.07 -0.14 -6.70 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -14.14 2.96 -171.76 -0.51 -14.65 16 10 C 0.13 2.66 6.70 -3.36 -0.02 2.64 16 11 C 0.10 1.85 6.57 -3.36 -0.02 1.83 16 12 N -0.98 -18.27 3.26 -113.00 -0.37 -18.64 16 13 S 2.69 48.53 5.59 -107.50 -0.60 47.93 16 14 O -0.97 -17.86 15.64 -57.17 -0.89 -18.76 16 15 O -0.96 -19.36 16.59 -57.17 -0.95 -20.31 16 16 C -0.69 -11.43 5.93 -39.30 -0.23 -11.66 16 17 C 0.00 0.06 9.52 -39.68 -0.38 -0.32 16 18 C -0.17 -2.01 10.07 -39.52 -0.40 -2.41 16 19 C -0.02 -0.25 10.03 -39.72 -0.40 -0.65 16 20 C -0.20 -2.69 6.27 -104.10 -0.65 -3.34 16 21 C 0.22 3.56 6.69 -38.95 -0.26 3.30 16 22 O -0.29 -4.78 9.28 -20.15 -0.19 -4.97 16 23 C 0.05 0.62 7.82 38.06 0.30 0.92 16 24 C -0.11 -1.20 7.12 -26.52 -0.19 -1.39 16 25 C 0.10 1.90 6.32 -3.59 -0.02 1.88 16 26 C 0.16 3.68 5.51 -3.60 -0.02 3.66 16 27 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.08 1.21 7.09 -51.93 -0.37 0.84 16 32 H 0.15 1.80 7.30 -52.48 -0.38 1.41 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.10 1.44 7.42 -51.93 -0.39 1.06 16 36 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.59 6.19 -51.93 -0.32 1.27 16 41 H 0.10 2.44 6.00 -51.93 -0.31 2.13 16 42 H 0.02 0.52 6.59 -51.93 -0.34 0.18 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -32.61 348.14 -10.65 -43.26 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.45 Total: 1.28 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.53 Total: -12.27 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.26 Total: -57.33 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -2.03 Total: -44.04 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: 48.53 SS G_CDS: -0.60 Total: 47.93 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.61 -10.65 -43.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331860667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.674 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds