Wall clock time and date at job start Tue Mar 31 2020 21:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00025 * 2 1 4 4 H 1.48499 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47085 * 299.99695 * 3 2 1 6 6 H 1.48510 * 109.47416 * 59.99713 * 3 2 1 7 7 C 1.38805 * 119.99636 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99969 * 162.55032 * 7 2 1 9 9 N 1.36929 * 120.00361 * 342.82363 * 7 2 1 10 10 C 1.46974 * 120.59509 * 151.29541 * 9 7 2 11 11 C 1.53820 * 108.39820 * 124.75943 * 10 9 7 12 12 N 1.46962 * 108.57597 * 49.63711 * 11 10 9 13 13 S 1.65603 * 120.59149 * 124.62792 * 12 11 10 14 14 O 1.42102 * 106.40326 * 23.55731 * 13 12 11 15 15 O 1.42099 * 106.40260 * 156.47770 * 13 12 11 16 16 C 1.76196 * 107.21844 * 270.01913 * 13 12 11 17 17 C 1.37978 * 119.88303 * 114.99522 * 16 13 12 18 18 C 1.38240 * 120.34866 * 180.02562 * 17 16 13 19 19 C 1.38390 * 119.77115 * 0.20925 * 18 17 16 20 20 C 1.37691 * 119.97705 * 359.92675 * 19 18 17 21 21 C 1.38929 * 120.78270 * 359.41994 * 20 19 18 22 22 O 1.36129 * 111.22254 * 180.83131 * 21 20 19 23 23 C 1.43774 * 109.30438 * 341.23961 * 22 21 20 24 24 C 1.51646 * 132.17968 * 179.41295 * 20 19 18 25 25 C 1.46968 * 118.81581 * 304.64307 * 12 11 10 26 26 C 1.46965 * 120.59652 * 331.57601 * 9 7 2 27 27 H 0.96999 * 120.00084 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.60887 * 244.54084 * 10 9 7 29 29 H 1.08995 * 109.60670 * 5.05586 * 10 9 7 30 30 H 1.09001 * 109.73895 * 289.85122 * 11 10 9 31 31 H 1.08990 * 109.67187 * 169.38695 * 11 10 9 32 32 H 1.08006 * 119.82218 * 0.06336 * 17 16 13 33 33 H 1.08006 * 120.11104 * 180.22876 * 18 17 16 34 34 H 1.08001 * 120.00830 * 179.90832 * 19 18 17 35 35 H 1.09002 * 110.74750 * 269.25615 * 23 22 21 36 36 H 1.08996 * 110.90506 * 145.97488 * 23 22 21 37 37 H 1.09002 * 110.93712 * 313.66861 * 24 20 19 38 38 H 1.09001 * 110.93580 * 77.31344 * 24 20 19 39 39 H 1.08994 * 109.61264 * 295.48649 * 25 12 11 40 40 H 1.08998 * 109.74784 * 175.05913 * 25 12 11 41 41 H 1.09002 * 109.60747 * 354.94771 * 26 9 7 42 42 H 1.08996 * 109.61105 * 115.28687 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2238 -0.2799 9 7 1.3713 -2.3614 0.3512 10 6 1.8065 -3.6519 -0.2013 11 6 2.1101 -4.6033 0.9686 12 7 0.9731 -4.5785 1.8995 13 16 0.1998 -5.9804 2.3227 14 8 1.1325 -7.0319 2.1142 15 8 -0.4243 -5.7320 3.5750 16 6 -1.1001 -6.2306 1.1599 17 6 -1.0634 -7.3178 0.3112 18 6 -2.0779 -7.5231 -0.6052 19 6 -3.1331 -6.6303 -0.6737 20 6 -3.1703 -5.5431 0.1704 21 6 -2.1636 -5.3335 1.1046 22 8 -2.4035 -4.2169 1.8454 23 6 -3.3541 -3.3857 1.1581 24 6 -4.1636 -4.4078 0.3253 25 6 0.5344 -3.2874 2.4477 26 6 0.2343 -2.3368 1.2821 27 1 -0.4850 0.8400 -0.0004 28 1 1.0133 -4.0708 -0.8205 29 1 2.7052 -3.5086 -0.8010 30 1 3.0126 -4.2758 1.4847 31 1 2.2517 -5.6158 0.5909 32 1 -0.2381 -8.0125 0.3636 33 1 -2.0472 -8.3775 -1.2652 34 1 -3.9269 -6.7862 -1.3892 35 1 -2.8456 -2.6740 0.5077 36 1 -4.0001 -2.8664 1.8660 37 1 -4.4344 -3.9920 -0.6453 38 1 -5.0503 -4.7372 0.8669 39 1 1.3247 -2.8663 3.0690 40 1 -0.3656 -3.4281 3.0461 41 1 0.0946 -1.3247 1.6622 42 1 -0.6687 -2.6613 0.7652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331860667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:51 Heat of formation + Delta-G solvation = -59.518347 kcal Electronic energy + Delta-G solvation = -29186.689770 eV Core-core repulsion = 25259.544763 eV Total energy + Delta-G solvation = -3927.145007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.19977 -39.20637 -38.68320 -38.22605 -37.00905 -35.58758 -33.88225 -32.91214 -31.82291 -31.32740 -30.29016 -28.19691 -25.07437 -24.78694 -24.48509 -23.70096 -23.05093 -21.61155 -20.02888 -19.32998 -18.74009 -18.22380 -17.82681 -17.57389 -17.18989 -16.85546 -16.61957 -16.01383 -15.50525 -15.46419 -15.36554 -15.10096 -14.80359 -14.58486 -14.42793 -14.02975 -13.84688 -13.62357 -13.54285 -13.36785 -13.22880 -13.00174 -12.92488 -12.83685 -12.63711 -12.53282 -12.46626 -12.10203 -12.01478 -11.92341 -11.79057 -11.67621 -11.39050 -10.57874 -10.39821 -10.13100 -9.30076 -8.61036 -7.84690 -5.30870 -0.67559 -0.20582 0.21976 1.47708 1.51398 1.60267 1.82838 2.11936 2.42428 2.52791 2.68532 3.21385 3.29821 3.39194 3.58288 3.64810 3.83192 3.90267 4.08996 4.13252 4.27646 4.28928 4.30611 4.46786 4.54576 4.56436 4.66875 4.76469 4.77058 4.83759 4.87156 4.91300 4.96760 5.09356 5.16196 5.25521 5.27761 5.29809 5.51528 5.62403 5.66573 5.77268 5.97823 6.40437 7.16010 7.84885 8.39082 9.20427 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.005069 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.459574 B = 5522.943567 C = 6473.398564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.045 4.045 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.131 3.869 11 C 0.109 3.891 12 N -0.987 5.987 13 S 2.702 3.298 14 O -0.976 6.976 15 O -0.985 6.985 16 C -0.711 4.711 17 C -0.011 4.011 18 C -0.162 4.162 19 C -0.016 4.016 20 C -0.205 4.205 21 C 0.180 3.820 22 O -0.313 6.313 23 C 0.039 3.961 24 C -0.097 4.097 25 C 0.109 3.891 26 C 0.175 3.825 27 H 0.250 0.750 28 H 0.017 0.983 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.169 0.831 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.173 -13.191 -1.986 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.241 4.241 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.391 4.391 8 H 0.086 0.914 9 N -0.330 5.330 10 C 0.004 3.996 11 C -0.018 4.018 12 N -0.825 5.825 13 S 2.795 3.205 14 O -0.967 6.967 15 O -0.976 6.976 16 C -0.800 4.800 17 C -0.030 4.030 18 C -0.181 4.181 19 C -0.034 4.034 20 C -0.207 4.207 21 C 0.132 3.868 22 O -0.226 6.226 23 C -0.035 4.035 24 C -0.134 4.134 25 C -0.018 4.018 26 C 0.048 3.952 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.178 0.822 33 H 0.192 0.808 34 H 0.187 0.813 35 H 0.089 0.911 36 H 0.152 0.848 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -7.942 -13.487 -1.054 15.687 hybrid contribution -0.165 1.519 -0.549 1.624 sum -8.107 -11.968 -1.602 14.544 Atomic orbital electron populations 1.70145 1.06395 1.25700 1.55174 1.25705 0.96044 1.01117 1.01213 0.85274 0.78659 0.80232 0.76612 1.19404 1.22098 1.21856 1.19528 0.92996 0.85803 1.40728 0.91440 1.44187 1.36703 1.02301 1.49792 1.21485 0.98243 0.86341 0.93576 1.22120 0.87730 1.01107 0.90834 1.57353 1.43773 1.21449 1.59972 1.01362 0.73232 0.72126 0.73759 1.93492 1.61754 1.54553 1.86852 1.93522 1.77779 1.85239 1.41039 1.29850 1.17138 1.07750 1.25295 1.21044 0.98955 0.92563 0.90481 1.21597 0.94250 1.01812 1.00412 1.21076 0.97846 0.89873 0.94616 1.21322 0.97582 1.01097 1.00707 1.19195 0.92343 0.86267 0.89015 1.86907 1.62293 1.30021 1.43389 1.24218 0.89449 0.93004 0.96813 1.21856 0.97370 0.91354 1.02836 1.22048 0.99620 0.83215 0.96894 1.20880 0.88410 0.97345 0.88569 0.94077 0.96530 0.90683 0.90567 0.87812 0.82239 0.80799 0.81314 0.91109 0.84816 0.86904 0.86790 0.91818 0.89611 0.91497 0.97059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.02 11.20 21.65 0.24 -51.78 16 2 C -0.04 -2.41 4.91 84.86 0.42 -1.99 16 3 Si 0.96 43.59 29.59 68.60 2.03 45.62 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.26 -13.79 9.57 84.03 0.80 -12.99 16 8 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -29.55 2.96 -697.32 -2.06 -31.62 16 10 C 0.13 5.25 6.70 86.57 0.58 5.83 16 11 C 0.11 3.77 6.57 86.57 0.57 4.34 16 12 N -0.99 -36.92 3.26 -511.43 -1.67 -38.59 16 13 S 2.70 97.57 5.59 -56.49 -0.32 97.26 16 14 O -0.98 -35.24 15.64 -128.00 -2.00 -37.25 16 15 O -0.99 -40.80 16.59 -128.00 -2.12 -42.92 16 16 C -0.71 -23.05 5.93 22.45 0.13 -22.92 16 17 C -0.01 -0.29 9.52 22.21 0.21 -0.08 16 18 C -0.16 -3.16 10.07 22.31 0.22 -2.93 16 19 C -0.02 -0.32 10.03 22.18 0.22 -0.10 16 20 C -0.21 -5.24 6.27 -19.53 -0.12 -5.37 16 21 C 0.18 5.90 6.69 22.68 0.15 6.05 16 22 O -0.31 -10.77 9.28 -95.02 -0.88 -11.65 16 23 C 0.04 1.04 7.82 72.56 0.57 1.61 16 24 C -0.10 -1.98 7.12 30.73 0.22 -1.76 16 25 C 0.11 4.45 6.32 86.41 0.55 5.00 16 26 C 0.18 8.25 5.51 86.42 0.48 8.73 16 27 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 2.83 7.93 -2.39 -0.02 2.81 16 30 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.10 3.06 7.09 -2.39 -0.02 3.05 16 32 H 0.16 3.56 7.30 -2.91 -0.02 3.54 16 33 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 34 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.07 2.22 7.42 -2.39 -0.02 2.20 16 36 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.09 3.44 6.19 -2.39 -0.01 3.43 16 41 H 0.07 3.54 6.00 -2.39 -0.01 3.53 16 42 H 0.01 0.56 6.59 -2.39 -0.02 0.54 16 Total: -1.00 -71.60 348.14 -0.74 -72.34 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.04 Total: 15.16 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 5.00 Total: -16.58 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -3.49 Total: -121.98 kcal Atomic # 8 Polarization: -86.81 SS G_CDS: -5.01 Total: -91.82 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 97.57 SS G_CDS: -0.32 Total: 97.26 kcal Total: -71.60 -0.74 -72.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331860667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.826 kcal (2) G-P(sol) polarization free energy of solvation -71.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds