Wall clock time and date at job start Tue Mar 31 2020 21:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47249 * 2 1 4 4 C 1.46500 * 120.00555 * 274.37548 * 3 2 1 5 5 C 1.50706 * 109.46693 * 280.39844 * 4 3 2 6 6 H 1.07995 * 119.99850 * 3.97673 * 5 4 3 7 7 C 1.37874 * 119.99663 * 183.97032 * 5 4 3 8 8 N 1.31517 * 120.00413 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47250 * 90.00358 * 9 7 5 11 11 H 1.48504 * 109.47594 * 210.00173 * 9 7 5 12 12 H 1.48502 * 109.47177 * 330.00310 * 9 7 5 13 13 S 1.65608 * 119.99933 * 94.37414 * 3 2 1 14 14 O 1.42096 * 106.39953 * 330.37522 * 13 3 2 15 15 O 1.42099 * 106.40236 * 197.46130 * 13 3 2 16 16 N 1.65592 * 107.21929 * 83.91628 * 13 3 2 17 17 C 1.46498 * 120.00216 * 64.59101 * 16 13 3 18 18 C 1.50698 * 109.47276 * 164.65096 * 17 16 13 19 19 N 1.30499 * 125.65017 * 89.97793 * 18 17 16 20 20 C 1.34136 * 109.25558 * 180.02562 * 19 18 17 21 21 C 1.34667 * 108.02097 * 0.02562 * 20 19 18 22 22 N 1.35046 * 125.65021 * 270.28464 * 18 17 16 23 23 C 1.46505 * 126.39760 * 0.02562 * 22 18 17 24 24 F 1.39893 * 109.46834 * 300.14079 * 23 22 18 25 25 F 1.39899 * 109.46754 * 60.14120 * 23 22 18 26 26 H 1.09000 * 109.47112 * 185.08136 * 1 2 3 27 27 H 1.09005 * 109.47155 * 305.08026 * 1 2 3 28 28 H 1.09001 * 109.47175 * 65.08411 * 1 2 3 29 29 H 1.08999 * 109.47375 * 240.00040 * 2 1 3 30 30 H 1.09000 * 109.47192 * 120.00257 * 2 1 3 31 31 H 1.09001 * 109.46689 * 40.39189 * 4 3 2 32 32 H 1.08993 * 109.47350 * 160.39655 * 4 3 2 33 33 H 0.96995 * 120.00258 * 179.97438 * 8 7 5 34 34 H 0.97007 * 120.00254 * 244.59515 * 16 13 3 35 35 H 1.09005 * 109.47037 * 44.65054 * 17 16 13 36 36 H 1.09002 * 109.47105 * 284.65385 * 17 16 13 37 37 H 1.07996 * 125.98343 * 179.97438 * 20 19 18 38 38 H 1.07995 * 126.59267 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46898 * 180.13978 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1713 2.1042 -1.2650 5 6 3.4543 1.6814 -1.9331 6 1 4.0597 0.9016 -1.4952 7 6 3.8550 2.2900 -3.1036 8 7 3.1179 3.2399 -3.6367 9 14 5.4449 1.7655 -3.9322 10 1 5.1642 0.6670 -4.8912 11 1 6.0283 2.9210 -4.6601 12 1 6.4060 1.2917 -2.9041 13 16 2.3975 2.1254 1.4300 14 8 1.5564 1.5471 2.4186 15 8 2.4335 3.5199 1.1595 16 7 3.9459 1.6839 1.8169 17 6 5.0603 2.0920 0.9581 18 6 6.3596 1.9050 1.6982 19 7 7.0872 0.8217 1.6957 20 6 8.1708 1.0149 2.4625 21 6 8.1120 2.2652 2.9593 22 7 6.9609 2.8287 2.4786 23 6 6.4731 4.1818 2.7573 24 9 6.3607 4.8932 1.5580 25 9 5.2199 4.1076 3.3748 26 1 -0.3633 -1.0236 0.0910 27 1 -0.3634 0.5906 0.8410 28 1 -0.3633 0.4329 -0.9320 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3291 1.8757 -1.9181 32 1 2.1994 3.1761 -1.0697 33 1 3.4001 3.6683 -4.4599 34 1 4.1151 1.1549 2.6123 35 1 4.9444 3.1414 0.6867 36 1 5.0654 1.4817 0.0550 37 1 8.9527 0.2938 2.6492 38 1 8.8326 2.7322 3.6142 39 1 7.1741 4.6917 3.4181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337053855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:32 Heat of formation + Delta-G solvation = -101.757807 kcal Electronic energy + Delta-G solvation = -29220.394090 eV Core-core repulsion = 24769.480663 eV Total energy + Delta-G solvation = -4450.913426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.101 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.41043 -47.49455 -42.21188 -36.66371 -36.02861 -35.20357 -35.03584 -33.66581 -32.69549 -29.95259 -29.90286 -26.66813 -26.48029 -25.37765 -23.13008 -21.89638 -21.68310 -20.57064 -18.97527 -18.46439 -17.91437 -17.59182 -17.05952 -16.78279 -16.41443 -15.84428 -15.21392 -15.03185 -14.74587 -14.52093 -14.35370 -14.22010 -13.81695 -13.79796 -13.34035 -13.30854 -13.18870 -12.94151 -12.65066 -12.32785 -12.03370 -11.97902 -11.66774 -11.53972 -11.40515 -11.28345 -11.03940 -10.90458 -10.50008 -10.35024 -10.33997 -10.14516 -10.00067 -9.79080 -9.15100 -8.70696 -8.48842 -8.04293 -6.10349 -4.17441 1.18898 1.66951 1.91506 2.92543 3.27501 3.31100 3.35115 3.38652 3.59016 3.85776 4.15328 4.26585 4.38044 4.39510 4.43125 5.08535 5.09940 5.23484 5.29515 5.44684 5.56326 5.75971 5.83967 5.90602 5.97860 6.14184 6.20671 6.37946 6.45369 6.69538 6.71470 6.74856 7.21298 7.38803 7.45758 7.69016 7.86630 7.87272 8.16471 8.87728 9.49067 10.97318 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.006161 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.612950 B = 4543.864690 C = 5959.284568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.242 3.758 5 C -0.543 4.543 6 H 0.065 0.935 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.270 1.270 13 S 2.785 3.215 14 O -0.996 6.996 15 O -0.974 6.974 16 N -1.126 6.126 17 C 0.200 3.800 18 C 0.234 3.766 19 N -0.465 5.465 20 C -0.014 4.014 21 C -0.050 4.050 22 N -0.510 5.510 23 C 0.476 3.524 24 F -0.173 7.173 25 F -0.174 7.174 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.410 0.590 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.178 0.822 38 H 0.183 0.817 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.429 -1.139 13.601 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.120 3.880 5 C -0.582 4.582 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.194 1.194 13 S 2.793 3.207 14 O -0.980 6.980 15 O -0.957 6.957 16 N -0.884 5.884 17 C 0.072 3.928 18 C -0.030 4.030 19 N -0.183 5.183 20 C -0.161 4.161 21 C -0.179 4.179 22 N -0.206 5.206 23 C 0.340 3.660 24 F -0.154 7.154 25 F -0.156 7.156 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.242 0.758 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.195 0.805 38 H 0.201 0.799 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.559 -0.852 13.358 15.372 hybrid contribution 1.498 0.047 -0.090 1.502 sum 9.058 -0.804 13.268 16.085 Atomic orbital electron populations 1.22209 0.96928 1.01323 1.02426 1.20972 0.93608 0.82748 1.02208 1.57727 1.78484 1.23141 1.23860 1.19249 0.97266 0.92654 0.78852 1.21551 1.07221 1.20936 1.08487 0.91653 1.24935 0.97061 0.94669 0.96976 1.69932 1.38036 1.24326 1.20132 0.86655 0.83694 0.78220 0.79915 1.20550 1.21168 1.19412 1.01802 0.72394 0.73777 0.72730 1.93556 1.64669 1.79756 1.59990 1.93586 1.86328 1.30737 1.85090 1.56073 1.24366 1.71128 1.36841 1.19811 0.77620 1.03345 0.92018 1.23667 0.98080 0.85012 0.96215 1.70409 1.04865 1.23305 1.19750 1.22489 0.98514 0.95567 0.99504 1.22696 0.91397 0.96775 1.07015 1.46808 1.20786 1.13152 1.39850 1.21336 0.83412 0.79486 0.81792 1.93182 1.96406 1.77204 1.48619 1.93172 1.44545 1.95805 1.82034 0.92431 0.92515 0.92154 0.89937 0.92129 0.94614 0.92563 0.92572 0.75816 0.88523 0.86048 0.80534 0.79946 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.13 2.30 6.01 -4.04 -0.02 2.27 16 3 N -0.99 -20.29 2.84 -115.67 -0.33 -20.62 16 4 C 0.24 5.89 5.46 -5.19 -0.03 5.86 16 5 C -0.54 -13.79 8.50 -34.44 -0.29 -14.09 16 6 H 0.07 1.60 6.45 -52.49 -0.34 1.26 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 9 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 S 2.79 55.82 6.07 -107.50 -0.65 55.17 16 14 O -1.00 -20.55 17.11 -57.18 -0.98 -21.53 16 15 O -0.97 -22.61 16.03 -57.18 -0.92 -23.53 16 16 N -1.13 -19.33 6.04 -11.66 -0.07 -19.40 16 17 C 0.20 3.61 6.42 -5.20 -0.03 3.58 16 18 C 0.23 3.74 7.22 -155.41 -1.12 2.62 16 19 N -0.47 -7.46 11.25 -10.82 -0.12 -7.59 16 20 C -0.01 -0.17 11.87 -17.81 -0.21 -0.38 16 21 C -0.05 -0.49 11.54 -16.56 -0.19 -0.68 16 22 N -0.51 -6.43 3.01 -119.65 -0.36 -6.79 16 23 C 0.48 5.19 5.74 59.85 0.34 5.53 16 24 F -0.17 -2.40 16.52 2.25 0.04 -2.36 16 25 F -0.17 -2.34 17.42 2.25 0.04 -2.30 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 30 H 0.06 0.95 7.80 -51.93 -0.40 0.54 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.52 6.77 -51.93 -0.35 1.16 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.41 6.17 8.65 -34.47 -0.30 5.87 16 35 H 0.10 1.88 6.60 -51.93 -0.34 1.53 16 36 H 0.12 2.40 5.89 -51.93 -0.31 2.09 16 37 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 38 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.16 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -34.09 353.96 -8.12 -42.20 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.54 Total: 6.02 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.28 Total: 4.06 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -0.14 Total: -78.69 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.89 Total: -45.06 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.08 Total: -4.66 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 55.82 SS G_CDS: -0.65 Total: 55.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.09 -8.12 -42.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337053855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.554 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds