Wall clock time and date at job start Tue Mar 31 2020 21:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47249 * 2 1 4 4 C 1.46500 * 120.00555 * 274.37548 * 3 2 1 5 5 C 1.50706 * 109.46693 * 280.39844 * 4 3 2 6 6 H 1.07995 * 119.99850 * 3.97673 * 5 4 3 7 7 C 1.37874 * 119.99663 * 183.97032 * 5 4 3 8 8 N 1.31517 * 120.00413 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47250 * 90.00358 * 9 7 5 11 11 H 1.48504 * 109.47594 * 210.00173 * 9 7 5 12 12 H 1.48502 * 109.47177 * 330.00310 * 9 7 5 13 13 S 1.65608 * 119.99933 * 94.37414 * 3 2 1 14 14 O 1.42096 * 106.39953 * 330.37522 * 13 3 2 15 15 O 1.42099 * 106.40236 * 197.46130 * 13 3 2 16 16 N 1.65592 * 107.21929 * 83.91628 * 13 3 2 17 17 C 1.46498 * 120.00216 * 64.59101 * 16 13 3 18 18 C 1.50698 * 109.47276 * 164.65096 * 17 16 13 19 19 N 1.30499 * 125.65017 * 89.97793 * 18 17 16 20 20 C 1.34136 * 109.25558 * 180.02562 * 19 18 17 21 21 C 1.34667 * 108.02097 * 0.02562 * 20 19 18 22 22 N 1.35046 * 125.65021 * 270.28464 * 18 17 16 23 23 C 1.46505 * 126.39760 * 0.02562 * 22 18 17 24 24 F 1.39893 * 109.46834 * 300.14079 * 23 22 18 25 25 F 1.39899 * 109.46754 * 60.14120 * 23 22 18 26 26 H 1.09000 * 109.47112 * 185.08136 * 1 2 3 27 27 H 1.09005 * 109.47155 * 305.08026 * 1 2 3 28 28 H 1.09001 * 109.47175 * 65.08411 * 1 2 3 29 29 H 1.08999 * 109.47375 * 240.00040 * 2 1 3 30 30 H 1.09000 * 109.47192 * 120.00257 * 2 1 3 31 31 H 1.09001 * 109.46689 * 40.39189 * 4 3 2 32 32 H 1.08993 * 109.47350 * 160.39655 * 4 3 2 33 33 H 0.96995 * 120.00258 * 179.97438 * 8 7 5 34 34 H 0.97007 * 120.00254 * 244.59515 * 16 13 3 35 35 H 1.09005 * 109.47037 * 44.65054 * 17 16 13 36 36 H 1.09002 * 109.47105 * 284.65385 * 17 16 13 37 37 H 1.07996 * 125.98343 * 179.97438 * 20 19 18 38 38 H 1.07995 * 126.59267 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46898 * 180.13978 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1713 2.1042 -1.2650 5 6 3.4543 1.6814 -1.9331 6 1 4.0597 0.9016 -1.4952 7 6 3.8550 2.2900 -3.1036 8 7 3.1179 3.2399 -3.6367 9 14 5.4449 1.7655 -3.9322 10 1 5.1642 0.6670 -4.8912 11 1 6.0283 2.9210 -4.6601 12 1 6.4060 1.2917 -2.9041 13 16 2.3975 2.1254 1.4300 14 8 1.5564 1.5471 2.4186 15 8 2.4335 3.5199 1.1595 16 7 3.9459 1.6839 1.8169 17 6 5.0603 2.0920 0.9581 18 6 6.3596 1.9050 1.6982 19 7 7.0872 0.8217 1.6957 20 6 8.1708 1.0149 2.4625 21 6 8.1120 2.2652 2.9593 22 7 6.9609 2.8287 2.4786 23 6 6.4731 4.1818 2.7573 24 9 6.3607 4.8932 1.5580 25 9 5.2199 4.1076 3.3748 26 1 -0.3633 -1.0236 0.0910 27 1 -0.3634 0.5906 0.8410 28 1 -0.3633 0.4329 -0.9320 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3291 1.8757 -1.9181 32 1 2.1994 3.1761 -1.0697 33 1 3.4001 3.6683 -4.4599 34 1 4.1151 1.1549 2.6123 35 1 4.9444 3.1414 0.6867 36 1 5.0654 1.4817 0.0550 37 1 8.9527 0.2938 2.6492 38 1 8.8326 2.7322 3.6142 39 1 7.1741 4.6917 3.4181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337053855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:32 Heat of formation + Delta-G solvation = -127.747108 kcal Electronic energy + Delta-G solvation = -29221.521070 eV Core-core repulsion = 24769.480663 eV Total energy + Delta-G solvation = -4452.040407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.101 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.33863 -48.45095 -43.17375 -38.37663 -37.70868 -36.93800 -36.45467 -34.67655 -34.62221 -31.51898 -31.02112 -28.51453 -27.50368 -26.52190 -24.94272 -23.30163 -22.76555 -21.63595 -20.51475 -19.56906 -18.88108 -18.70599 -18.58453 -18.41608 -18.14367 -17.38772 -16.80162 -16.25595 -16.00130 -15.73879 -15.61373 -15.31251 -15.18683 -14.81590 -14.77224 -14.65463 -14.52351 -14.26184 -13.99951 -13.78842 -13.64425 -13.35276 -13.23649 -13.17709 -13.06824 -13.03933 -12.72037 -12.70101 -12.27883 -12.09319 -11.74016 -11.58530 -11.35737 -11.15004 -10.67300 -10.55160 -9.83277 -9.57597 -8.15967 -6.28597 -0.40558 0.67184 1.06665 1.42001 1.44174 1.53763 1.83220 2.12236 2.42627 2.55844 2.58467 3.07004 3.16544 3.17288 3.45754 3.55510 3.56027 3.95605 4.07402 4.31653 4.42076 4.45673 4.50915 4.63815 4.71402 4.74761 4.99753 5.01066 5.17225 5.29887 5.42786 5.53251 5.66076 5.68204 5.78014 5.83444 6.04798 6.12499 6.83623 6.89449 7.41275 8.92238 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.006161 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.612950 B = 4543.864690 C = 5959.284568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.994 5.994 4 C 0.258 3.742 5 C -0.538 4.538 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.925 5.925 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.265 1.265 13 S 2.800 3.200 14 O -1.000 7.000 15 O -1.009 7.009 16 N -1.109 6.109 17 C 0.209 3.791 18 C 0.190 3.810 19 N -0.493 5.493 20 C -0.044 4.044 21 C -0.010 4.010 22 N -0.510 5.510 23 C 0.462 3.538 24 F -0.196 7.196 25 F -0.194 7.194 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.021 0.979 32 H 0.024 0.976 33 H 0.265 0.735 34 H 0.421 0.579 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.205 0.795 38 H 0.242 0.758 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.934 -2.087 15.479 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.835 5.835 4 C 0.134 3.866 5 C -0.578 4.578 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.564 5.564 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.189 1.189 13 S 2.808 3.192 14 O -0.984 6.984 15 O -0.992 6.992 16 N -0.871 5.871 17 C 0.081 3.919 18 C -0.072 4.072 19 N -0.212 5.212 20 C -0.189 4.189 21 C -0.139 4.139 22 N -0.205 5.205 23 C 0.328 3.672 24 F -0.178 7.178 25 F -0.175 7.175 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.255 0.745 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.222 0.778 38 H 0.258 0.742 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 10.042 -1.827 15.256 18.355 hybrid contribution 0.783 0.307 -0.552 1.006 sum 10.824 -1.520 14.704 18.322 Atomic orbital electron populations 1.22190 0.95704 1.03213 1.01467 1.21265 0.94747 0.81108 1.03329 1.57627 1.79122 1.24295 1.22468 1.18794 0.96499 0.91271 0.80046 1.21802 1.07307 1.20491 1.08156 0.90863 1.25699 1.00001 0.94765 0.97816 1.70054 1.39872 1.25767 1.20757 0.85694 0.80125 0.77833 0.78961 1.19755 1.21232 1.18880 1.01202 0.72747 0.72931 0.72349 1.93540 1.65346 1.79599 1.59874 1.93541 1.87002 1.33176 1.85530 1.55699 1.23284 1.70991 1.37104 1.19408 0.79339 1.01262 0.91845 1.22999 0.98235 0.86751 0.99230 1.70288 1.06276 1.23939 1.20689 1.23102 0.98389 0.97566 0.99879 1.23634 0.89968 0.95638 1.04613 1.46989 1.21235 1.13322 1.39002 1.22506 0.83885 0.79016 0.81781 1.93133 1.96527 1.77662 1.50473 1.93128 1.46371 1.95853 1.82188 0.89064 0.93494 0.93123 0.89861 0.89914 0.96080 0.95762 0.92588 0.74465 0.90790 0.88396 0.77812 0.74198 0.75444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.23 10.24 71.98 0.74 -4.49 16 2 C 0.12 4.18 6.01 86.38 0.52 4.70 16 3 N -0.99 -41.70 2.84 -519.85 -1.48 -43.17 16 4 C 0.26 13.07 5.46 85.63 0.47 13.54 16 5 C -0.54 -28.07 8.50 25.60 0.22 -27.85 16 6 H 0.07 3.64 6.45 -2.91 -0.02 3.62 16 7 C 0.02 0.93 5.46 84.65 0.46 1.39 16 8 N -0.92 -53.82 13.29 21.45 0.28 -53.54 16 9 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 13 S 2.80 114.78 6.07 -56.49 -0.34 114.43 16 14 O -1.00 -41.12 17.11 -128.00 -2.19 -43.31 16 15 O -1.01 -48.91 16.03 -128.00 -2.05 -50.96 16 16 N -1.11 -38.65 6.04 -190.79 -1.15 -39.81 16 17 C 0.21 7.78 6.42 85.63 0.55 8.33 16 18 C 0.19 5.98 7.22 138.13 1.00 6.97 16 19 N -0.49 -15.22 11.25 -188.13 -2.12 -17.33 16 20 C -0.04 -0.90 11.87 83.52 0.99 0.09 16 21 C -0.01 -0.14 11.54 83.09 0.96 0.82 16 22 N -0.51 -11.57 3.01 -532.45 -1.60 -13.17 16 23 C 0.46 8.97 5.74 127.77 0.73 9.70 16 24 F -0.20 -5.37 16.52 44.97 0.74 -4.62 16 25 F -0.19 -5.01 17.42 44.97 0.78 -4.23 16 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.05 1.55 7.90 -2.38 -0.02 1.53 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.87 8.07 -2.39 -0.02 2.85 16 30 H 0.08 2.49 7.80 -2.39 -0.02 2.47 16 31 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.02 1.39 6.77 -2.39 -0.02 1.37 16 33 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.42 12.62 8.65 -96.74 -0.84 11.78 16 35 H 0.07 3.04 6.60 -2.38 -0.02 3.02 16 36 H 0.10 4.03 5.89 -2.39 -0.01 4.02 16 37 H 0.21 2.79 8.06 -2.91 -0.02 2.76 16 38 H 0.24 0.59 8.06 -2.91 -0.02 0.57 16 39 H 0.23 1.03 8.08 -2.39 -0.02 1.01 16 Total: -1.00 -77.91 353.96 -0.19 -78.11 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.27 Total: 19.47 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.63 Total: 13.20 kcal Atomic # 7 Polarization: -160.96 SS G_CDS: -6.07 Total: -167.03 kcal Atomic # 8 Polarization: -90.03 SS G_CDS: -4.24 Total: -94.27 kcal Atomic # 9 Polarization: -10.38 SS G_CDS: 1.53 Total: -8.85 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 114.78 SS G_CDS: -0.34 Total: 114.43 kcal Total: -77.91 -0.19 -78.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337053855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.642 kcal (2) G-P(sol) polarization free energy of solvation -77.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds