Wall clock time and date at job start Tue Mar 31 2020 21:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.47116 * 2 1 4 4 C 1.35869 * 126.47498 * 269.97899 * 3 2 1 5 5 C 1.50702 * 125.60008 * 0.05058 * 4 3 2 6 6 N 1.30594 * 108.79939 * 180.02562 * 4 3 2 7 7 C 1.33884 * 109.49149 * 359.97438 * 6 4 3 8 8 N 1.48042 * 125.97967 * 179.97438 * 7 6 4 9 9 O 1.31706 * 119.99754 * 0.02611 * 8 7 6 10 10 O 1.31697 * 120.00382 * 180.02562 * 8 7 6 11 11 C 1.35926 * 108.03756 * 0.02562 * 7 6 4 12 12 S 1.76200 * 126.68827 * 180.02562 * 11 7 6 13 13 C 1.71206 * 99.99886 * 270.02030 * 12 11 7 14 14 N 1.33869 * 126.21119 * 0.02562 * 13 12 11 15 15 N 1.28554 * 110.02072 * 179.97438 * 14 13 12 16 16 C 1.34187 * 109.56226 * 0.02562 * 15 14 13 17 17 C 1.38197 * 126.52546 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99777 * 180.02562 * 17 16 15 19 19 C 1.46181 * 119.99914 * 0.02767 * 17 16 15 20 20 N 1.29762 * 119.99964 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00161 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46752 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46966 * 119.99759 * 21 19 17 24 24 H 1.48497 * 109.46985 * 240.00205 * 21 19 17 25 25 N 1.36246 * 126.21709 * 179.71400 * 13 12 11 26 26 C 1.46497 * 127.05083 * 0.02562 * 25 13 12 27 27 H 1.08999 * 109.47440 * 59.99714 * 1 2 3 28 28 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47003 * 299.99819 * 1 2 3 30 30 H 1.09003 * 109.47003 * 240.00181 * 2 1 3 31 31 H 1.08999 * 109.47440 * 120.00286 * 2 1 3 32 32 H 1.08989 * 109.47070 * 269.98434 * 5 4 3 33 33 H 1.09002 * 109.47062 * 29.99126 * 5 4 3 34 34 H 1.09001 * 109.46513 * 149.98756 * 5 4 3 35 35 H 0.97006 * 119.99893 * 180.02562 * 20 19 17 36 36 H 1.09007 * 109.46997 * 90.02366 * 26 25 13 37 37 H 1.08999 * 109.47023 * 210.02126 * 26 25 13 38 38 H 1.09000 * 109.47399 * 330.02697 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2880 2.1427 -1.0925 5 6 2.1328 1.7055 -2.5264 6 7 2.7031 3.3156 -0.6960 7 6 2.7166 3.3559 0.6421 8 7 3.1256 4.5105 1.4735 9 8 3.5216 5.6278 0.8995 10 8 3.0935 4.4206 2.7870 11 6 2.2902 2.1506 1.1038 12 16 2.1186 1.6700 2.7903 13 6 3.6796 1.0276 3.0765 14 7 4.6812 0.9590 2.1910 15 7 5.7138 0.4206 2.7353 16 6 5.4378 0.1078 4.0107 17 6 6.2963 -0.4860 4.9163 18 1 5.9618 -0.6919 5.9224 19 6 7.6571 -0.8352 4.5125 20 7 8.0588 -0.5881 3.3036 21 14 8.8180 -1.6373 5.7368 22 1 8.1230 -1.8100 7.0377 23 1 9.2415 -2.9639 5.2214 24 1 10.0121 -0.7748 5.9248 25 7 4.1299 0.4988 4.2486 26 6 3.3832 0.3671 5.5021 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.0641 1.2572 -2.8723 33 1 1.3284 0.9735 -2.5981 34 1 1.8937 2.5700 -3.1458 35 1 8.9617 -0.8202 3.0356 36 1 2.8703 -0.5945 5.5202 37 1 4.0731 0.4268 6.3439 38 1 2.6507 1.1710 5.5749 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340847812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:44 Heat of formation + Delta-G solvation = 160.872595 kcal Electronic energy + Delta-G solvation = -27206.025817 eV Core-core repulsion = 23217.190086 eV Total energy + Delta-G solvation = -3988.835731 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.64016 -40.42377 -38.26519 -35.42159 -33.91797 -33.72013 -33.42423 -32.28223 -30.68597 -29.59748 -28.37566 -26.66849 -26.04768 -25.34519 -23.78223 -21.72854 -21.11654 -20.72028 -20.33463 -18.48154 -17.65427 -17.48749 -17.08995 -16.60165 -15.80379 -15.52418 -15.07163 -14.84001 -14.82148 -14.61884 -14.19686 -13.83351 -13.49800 -13.38127 -13.01477 -12.67019 -12.49381 -12.38611 -12.36279 -11.73316 -11.60739 -11.44940 -11.29168 -11.06361 -10.97590 -10.87860 -10.57021 -10.50377 -10.20567 -10.14841 -9.84122 -9.76159 -8.98228 -8.89490 -8.66139 -8.49858 -7.03365 -6.91729 -4.64743 -0.17624 1.06574 1.28747 1.57969 2.34124 2.51840 2.76280 2.80914 2.94683 2.99553 3.23126 3.71757 3.98491 4.12250 4.20883 4.23504 4.38985 4.57977 4.90925 4.93760 5.14384 5.15344 5.18421 5.24951 5.31071 5.46554 5.53343 5.66197 5.70780 5.79640 5.96946 6.20075 6.51824 6.58028 6.71011 6.98331 7.01115 7.39092 7.52567 7.78405 8.04063 8.37895 8.79660 9.98296 10.48743 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.003920 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.140264 B = 7140.518906 C = 7458.123284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 N -0.414 5.414 4 C 0.257 3.743 5 C -0.071 4.071 6 N -0.444 5.444 7 C 0.145 3.855 8 N 0.019 4.981 9 O -0.168 6.168 10 O -0.135 6.135 11 C 0.062 3.938 12 S 0.186 5.814 13 C -0.032 4.032 14 N -0.268 5.268 15 N -0.341 5.341 16 C 0.348 3.652 17 C -0.450 4.450 18 H 0.090 0.910 19 C 0.079 3.921 20 N -0.708 5.708 21 Si 0.927 3.073 22 H -0.257 1.257 23 H -0.270 1.270 24 H -0.269 1.269 25 N -0.509 5.509 26 C 0.100 3.900 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.286 0.714 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.511 -4.092 -5.107 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.030 4.030 3 N -0.097 5.097 4 C -0.010 4.010 5 C -0.129 4.129 6 N -0.165 5.165 7 C -0.073 4.073 8 N 0.500 4.500 9 O -0.358 6.358 10 O -0.330 6.330 11 C -0.173 4.173 12 S 0.415 5.585 13 C -0.401 4.401 14 N -0.117 5.117 15 N -0.192 5.192 16 C 0.109 3.891 17 C -0.489 4.489 18 H 0.108 0.892 19 C -0.153 4.153 20 N -0.329 5.329 21 Si 0.750 3.250 22 H -0.180 1.180 23 H -0.195 1.195 24 H -0.194 1.194 25 N -0.212 5.212 26 C -0.044 4.044 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.516 -3.816 -6.726 16.447 hybrid contribution 1.186 -0.831 1.734 2.259 sum -13.330 -4.647 -4.992 14.974 Atomic orbital electron populations 1.22182 0.92902 1.03980 1.03491 1.22195 0.96129 0.78047 1.06645 1.46314 1.45470 1.12973 1.04900 1.23673 0.99669 0.85653 0.91981 1.20389 1.04041 1.03224 0.85255 1.69596 1.18702 1.20270 1.07933 1.19572 1.11790 0.86745 0.89231 1.49039 0.97200 1.01248 1.02534 1.96260 1.50093 1.13762 1.75736 1.96349 1.58648 1.90721 0.87302 1.22765 1.06563 0.92290 0.95697 1.82217 1.06203 1.75071 0.94968 1.24810 1.03357 1.21063 0.90865 1.75069 0.96454 1.14432 1.25752 1.75780 1.15072 1.23828 1.04556 1.21414 0.80036 0.94168 0.93455 1.19055 0.94642 1.37929 0.97313 0.89232 1.27204 0.98256 0.94201 0.95659 1.69439 1.17882 1.27892 1.17676 0.85969 0.79392 0.79040 0.80645 1.18018 1.19501 1.19411 1.45587 1.12755 1.53911 1.08958 1.21522 0.96324 1.01007 0.85592 0.91684 0.89610 0.91168 0.87555 0.87246 0.88767 0.89722 0.88166 0.90160 0.92556 0.90128 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.24 37.16 0.38 -0.79 16 2 C 0.09 0.93 6.33 -4.04 -0.03 0.90 16 3 N -0.41 -5.98 2.78 -112.24 -0.31 -6.29 16 4 C 0.26 3.64 7.93 -154.58 -1.23 2.42 16 5 C -0.07 -0.57 9.99 36.01 0.36 -0.21 16 6 N -0.44 -8.25 11.22 -7.44 -0.08 -8.34 16 7 C 0.15 2.99 8.13 -145.30 -1.18 1.81 16 8 N 0.02 0.43 4.99 32.80 0.16 0.59 16 9 O -0.17 -3.82 19.97 -31.57 -0.63 -4.45 16 10 O -0.14 -3.07 18.13 -31.57 -0.57 -3.65 16 11 C 0.06 1.13 6.00 -15.95 -0.10 1.04 16 12 S 0.19 3.39 19.59 -107.50 -2.11 1.28 16 13 C -0.03 -0.76 7.85 -86.39 -0.68 -1.44 16 14 N -0.27 -7.38 11.56 30.08 0.35 -7.04 16 15 N -0.34 -10.21 10.63 31.17 0.33 -9.88 16 16 C 0.35 9.53 7.52 -154.25 -1.16 8.37 16 17 C -0.45 -11.57 9.25 -36.41 -0.34 -11.91 16 18 H 0.09 2.08 7.35 -52.49 -0.39 1.69 16 19 C 0.08 1.93 5.66 -15.24 -0.09 1.85 16 20 N -0.71 -18.80 12.04 55.96 0.67 -18.13 16 21 Si 0.93 17.66 29.64 -169.99 -5.04 12.62 16 22 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 23 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 24 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 25 N -0.51 -12.00 3.25 -124.52 -0.40 -12.41 16 26 C 0.10 1.75 10.82 59.85 0.65 2.40 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.11 0.80 7.69 -51.93 -0.40 0.40 16 31 H 0.11 1.33 7.83 -51.93 -0.41 0.92 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.42 7.73 -51.93 -0.40 0.02 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.29 6.75 8.27 -40.82 -0.34 6.41 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.34 7.51 -51.93 -0.39 0.95 16 38 H 0.07 1.03 7.78 -51.93 -0.40 0.62 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -37.64 357.85 -9.70 -47.34 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.06 Total: -1.47 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -3.40 Total: 4.44 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.72 Total: -61.49 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -1.20 Total: -8.10 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.04 Total: 12.62 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.11 Total: 1.28 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.64 -9.70 -47.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340847812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.208 kcal (2) G-P(sol) polarization free energy of solvation -37.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds