Wall clock time and date at job start Tue Mar 31 2020 21:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.47116 * 2 1 4 4 C 1.35869 * 126.47498 * 269.97899 * 3 2 1 5 5 C 1.50702 * 125.60008 * 0.05058 * 4 3 2 6 6 N 1.30594 * 108.79939 * 180.02562 * 4 3 2 7 7 C 1.33884 * 109.49149 * 359.97438 * 6 4 3 8 8 N 1.48042 * 125.97967 * 179.97438 * 7 6 4 9 9 O 1.31706 * 119.99754 * 0.02611 * 8 7 6 10 10 O 1.31697 * 120.00382 * 180.02562 * 8 7 6 11 11 C 1.35926 * 108.03756 * 0.02562 * 7 6 4 12 12 S 1.76200 * 126.68827 * 180.02562 * 11 7 6 13 13 C 1.71206 * 99.99886 * 270.02030 * 12 11 7 14 14 N 1.33869 * 126.21119 * 0.02562 * 13 12 11 15 15 N 1.28554 * 110.02072 * 179.97438 * 14 13 12 16 16 C 1.34187 * 109.56226 * 0.02562 * 15 14 13 17 17 C 1.38197 * 126.52546 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99777 * 180.02562 * 17 16 15 19 19 C 1.46181 * 119.99914 * 0.02767 * 17 16 15 20 20 N 1.29762 * 119.99964 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00161 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46752 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46966 * 119.99759 * 21 19 17 24 24 H 1.48497 * 109.46985 * 240.00205 * 21 19 17 25 25 N 1.36246 * 126.21709 * 179.71400 * 13 12 11 26 26 C 1.46497 * 127.05083 * 0.02562 * 25 13 12 27 27 H 1.08999 * 109.47440 * 59.99714 * 1 2 3 28 28 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47003 * 299.99819 * 1 2 3 30 30 H 1.09003 * 109.47003 * 240.00181 * 2 1 3 31 31 H 1.08999 * 109.47440 * 120.00286 * 2 1 3 32 32 H 1.08989 * 109.47070 * 269.98434 * 5 4 3 33 33 H 1.09002 * 109.47062 * 29.99126 * 5 4 3 34 34 H 1.09001 * 109.46513 * 149.98756 * 5 4 3 35 35 H 0.97006 * 119.99893 * 180.02562 * 20 19 17 36 36 H 1.09007 * 109.46997 * 90.02366 * 26 25 13 37 37 H 1.08999 * 109.47023 * 210.02126 * 26 25 13 38 38 H 1.09000 * 109.47399 * 330.02697 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2880 2.1427 -1.0925 5 6 2.1328 1.7055 -2.5264 6 7 2.7031 3.3156 -0.6960 7 6 2.7166 3.3559 0.6421 8 7 3.1256 4.5105 1.4735 9 8 3.5216 5.6278 0.8995 10 8 3.0935 4.4206 2.7870 11 6 2.2902 2.1506 1.1038 12 16 2.1186 1.6700 2.7903 13 6 3.6796 1.0276 3.0765 14 7 4.6812 0.9590 2.1910 15 7 5.7138 0.4206 2.7353 16 6 5.4378 0.1078 4.0107 17 6 6.2963 -0.4860 4.9163 18 1 5.9618 -0.6919 5.9224 19 6 7.6571 -0.8352 4.5125 20 7 8.0588 -0.5881 3.3036 21 14 8.8180 -1.6373 5.7368 22 1 8.1230 -1.8100 7.0377 23 1 9.2415 -2.9639 5.2214 24 1 10.0121 -0.7748 5.9248 25 7 4.1299 0.4988 4.2486 26 6 3.3832 0.3671 5.5021 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.0641 1.2572 -2.8723 33 1 1.3284 0.9735 -2.5981 34 1 1.8937 2.5700 -3.1458 35 1 8.9617 -0.8202 3.0356 36 1 2.8703 -0.5945 5.5202 37 1 4.0731 0.4268 6.3439 38 1 2.6507 1.1710 5.5749 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340847812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:43 Heat of formation + Delta-G solvation = 137.014272 kcal Electronic energy + Delta-G solvation = -27207.060391 eV Core-core repulsion = 23217.190086 eV Total energy + Delta-G solvation = -3989.870306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.92775 -42.32222 -39.94398 -36.50224 -35.64599 -35.57573 -35.20408 -33.39554 -31.66053 -31.50075 -29.63246 -28.34696 -27.50700 -27.04441 -24.69852 -23.25411 -22.98264 -22.37348 -21.63858 -19.90874 -19.47299 -19.17384 -18.51170 -18.02701 -17.42314 -17.09784 -16.55952 -16.47682 -16.31745 -15.85644 -15.50826 -15.04322 -14.80679 -14.21857 -13.95748 -13.93881 -13.65458 -13.48897 -13.31358 -13.11461 -13.00486 -12.87059 -12.72959 -12.69469 -12.55856 -12.39911 -11.99628 -11.98101 -11.91725 -11.78020 -11.51514 -11.35708 -10.71355 -10.52721 -10.45598 -10.25488 -8.72614 -8.72343 -6.58666 -1.87868 -0.44055 -0.23409 0.18840 0.92892 1.12156 1.26882 1.31710 1.38787 1.55680 1.57400 2.12658 2.34244 2.45309 2.84254 3.03007 3.22160 3.42285 3.78462 3.90098 4.05203 4.18876 4.24211 4.45133 4.47970 4.59694 4.60733 4.62493 4.69816 4.76329 4.86993 4.87091 4.96668 5.14725 5.18062 5.33348 5.53036 5.55313 5.98117 6.12284 6.15606 6.50572 6.92765 8.21168 8.54554 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.003920 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.140264 B = 7140.518906 C = 7458.123284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.079 3.921 3 N -0.403 5.403 4 C 0.279 3.721 5 C -0.072 4.072 6 N -0.483 5.483 7 C 0.115 3.885 8 N 0.019 4.981 9 O -0.197 6.197 10 O -0.158 6.158 11 C 0.047 3.953 12 S 0.244 5.756 13 C -0.014 4.014 14 N -0.317 5.317 15 N -0.401 5.401 16 C 0.319 3.681 17 C -0.475 4.475 18 H 0.109 0.891 19 C 0.033 3.967 20 N -0.762 5.762 21 Si 1.012 2.988 22 H -0.241 1.241 23 H -0.261 1.261 24 H -0.268 1.268 25 N -0.515 5.515 26 C 0.090 3.910 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.141 0.859 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.293 0.707 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 -6.463 -5.255 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.040 4.040 3 N -0.084 5.084 4 C 0.012 3.988 5 C -0.130 4.130 6 N -0.205 5.205 7 C -0.103 4.103 8 N 0.494 4.506 9 O -0.383 6.383 10 O -0.350 6.350 11 C -0.191 4.191 12 S 0.472 5.528 13 C -0.386 4.386 14 N -0.164 5.164 15 N -0.250 5.250 16 C 0.079 3.921 17 C -0.515 4.515 18 H 0.127 0.873 19 C -0.194 4.194 20 N -0.383 5.383 21 Si 0.830 3.170 22 H -0.163 1.163 23 H -0.186 1.186 24 H -0.193 1.193 25 N -0.217 5.217 26 C -0.053 4.053 27 H 0.102 0.898 28 H 0.132 0.868 29 H 0.075 0.925 30 H 0.159 0.841 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.565 -6.159 -6.872 18.962 hybrid contribution 1.574 -0.148 1.615 2.260 sum -14.991 -6.307 -5.257 17.092 Atomic orbital electron populations 1.22197 0.89875 1.05896 1.03766 1.22711 0.98525 0.75499 1.07305 1.46734 1.43943 1.14047 1.03705 1.24946 0.95905 0.84027 0.93950 1.20831 1.06250 1.04952 0.80979 1.69590 1.20853 1.22980 1.07035 1.19858 1.13642 0.86555 0.90290 1.49316 0.96732 1.01898 1.02692 1.96230 1.51531 1.14949 1.75580 1.96310 1.59555 1.90951 0.88157 1.22872 1.07020 0.92300 0.96952 1.81894 1.01756 1.73750 0.95402 1.25789 1.04717 1.17732 0.90329 1.74942 0.97336 1.16895 1.27262 1.75637 1.16872 1.26129 1.06389 1.21819 0.81793 0.95081 0.93409 1.19595 0.95532 1.38398 0.97993 0.87304 1.28425 0.99558 0.93921 0.97528 1.69557 1.18850 1.29573 1.20354 0.84734 0.76398 0.77807 0.78090 1.16321 1.18565 1.19263 1.45949 1.12241 1.53007 1.10522 1.21926 0.96620 1.03366 0.83362 0.89824 0.86814 0.92500 0.84135 0.89418 0.87590 0.85345 0.86808 0.89518 0.89853 0.89300 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.24 71.98 0.74 -0.86 16 2 C 0.08 1.37 6.33 86.38 0.55 1.91 16 3 N -0.40 -10.93 2.78 -509.00 -1.42 -12.35 16 4 C 0.28 7.35 7.93 137.84 1.09 8.44 16 5 C -0.07 -0.88 9.99 71.24 0.71 -0.17 16 6 N -0.48 -17.93 11.22 -177.46 -1.99 -19.92 16 7 C 0.12 4.85 8.13 128.51 1.04 5.90 16 8 N 0.02 0.92 4.99 -50.13 -0.25 0.67 16 9 O -0.20 -9.49 19.97 3.51 0.07 -9.42 16 10 O -0.16 -7.47 18.13 3.52 0.06 -7.41 16 11 C 0.05 1.71 6.00 83.31 0.50 2.20 16 12 S 0.24 8.73 19.59 -56.49 -1.11 7.63 16 13 C -0.01 -0.67 7.85 178.87 1.40 0.74 16 14 N -0.32 -18.11 11.56 -58.75 -0.68 -18.79 16 15 N -0.40 -25.03 10.63 -55.29 -0.59 -25.62 16 16 C 0.32 18.00 7.52 132.45 1.00 19.00 16 17 C -0.48 -24.81 9.25 24.32 0.22 -24.59 16 18 H 0.11 5.00 7.35 -2.91 -0.02 4.97 16 19 C 0.03 1.62 5.66 87.06 0.49 2.12 16 20 N -0.76 -41.95 12.04 23.15 0.28 -41.67 16 21 Si 1.01 35.96 29.64 68.60 2.03 37.99 16 22 H -0.24 -7.82 7.11 99.48 0.71 -7.11 16 23 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 24 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 25 N -0.52 -24.40 3.25 -547.88 -1.78 -26.18 16 26 C 0.09 3.00 10.82 127.77 1.38 4.38 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.14 1.51 7.69 -2.39 -0.02 1.49 16 31 H 0.09 1.98 7.83 -2.39 -0.02 1.96 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.13 0.49 7.73 -2.39 -0.02 0.47 16 34 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.29 14.35 8.27 -92.70 -0.77 13.58 16 36 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.09 2.82 7.51 -2.39 -0.02 2.80 16 38 H 0.09 2.55 7.78 -2.39 -0.02 2.53 16 Total: -1.00 -90.46 357.85 4.89 -85.57 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.12 Total: 10.44 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 9.13 Total: 19.07 kcal Atomic # 7 Polarization: -137.44 SS G_CDS: -6.43 Total: -143.86 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.13 Total: -16.83 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Atomic # 16 Polarization: 8.73 SS G_CDS: -1.11 Total: 7.63 kcal Total: -90.46 4.89 -85.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340847812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.583 kcal (2) G-P(sol) polarization free energy of solvation -90.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds