Wall clock time and date at job start Tue Mar 31 2020 20:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99943 * 2 1 4 4 O 1.20827 * 119.99781 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99761 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.37103 * 119.99667 * 263.99274 * 6 5 3 8 8 H 1.08007 * 119.99784 * 197.01175 * 7 6 5 9 9 C 1.38943 * 120.00508 * 17.00711 * 7 6 5 10 10 N 1.31416 * 119.99506 * 21.26013 * 9 7 6 11 11 Si 1.86797 * 120.00567 * 201.25609 * 9 7 6 12 12 H 1.48500 * 109.46997 * 90.00030 * 11 9 7 13 13 H 1.48500 * 109.47238 * 210.00243 * 11 9 7 14 14 H 1.48507 * 109.46972 * 330.00124 * 11 9 7 15 15 C 1.34776 * 120.00259 * 83.98541 * 6 5 3 16 16 O 1.21286 * 119.99957 * 0.02562 * 15 6 5 17 17 C 1.50704 * 119.99905 * 180.27615 * 15 6 5 18 18 O 1.42899 * 109.46997 * 179.72867 * 17 15 6 19 19 C 1.35896 * 117.00167 * 180.02562 * 18 17 15 20 20 C 1.38759 * 120.05380 * 359.72329 * 19 18 17 21 21 C 1.38126 * 119.94261 * 179.78992 * 20 19 18 22 22 C 1.38286 * 120.05354 * 0.48719 * 21 20 19 23 23 C 1.38244 * 120.11407 * 359.73969 * 22 21 20 24 24 N 1.48010 * 119.97115 * 180.02562 * 23 22 21 25 25 O 1.21803 * 119.99745 * 180.02562 * 24 23 22 26 26 O 1.21795 * 119.99778 * 0.02831 * 24 23 22 27 27 C 1.38167 * 120.05617 * 0.02877 * 23 22 21 28 28 H 1.09006 * 109.47137 * 300.00658 * 1 2 3 29 29 H 1.09004 * 109.46826 * 59.99973 * 1 2 3 30 30 H 1.08995 * 109.47349 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47376 * 59.99887 * 5 3 2 32 32 H 1.09003 * 109.47391 * 299.99693 * 5 3 2 33 33 H 0.96999 * 119.99878 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47258 * 299.72882 * 17 15 6 35 35 H 1.08998 * 109.46881 * 59.73150 * 17 15 6 36 36 H 1.07995 * 120.02576 * 0.02562 * 20 19 18 37 37 H 1.07995 * 119.97205 * 180.22892 * 21 20 19 38 38 H 1.07999 * 119.94513 * 179.76754 * 22 21 20 39 39 H 1.07998 * 120.02453 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2948 3.3015 -1.1822 8 1 4.8541 4.2254 -1.1744 9 6 3.8928 2.7430 -2.3893 10 7 2.8930 1.8907 -2.4182 11 14 4.7732 3.2038 -3.9710 12 1 5.9033 2.2678 -4.1992 13 1 3.8231 3.1196 -5.1091 14 1 5.2934 4.5906 -3.8620 15 6 4.0560 3.3609 1.1595 16 8 3.7793 2.8108 2.2044 17 6 4.4774 4.8079 1.1582 18 8 4.4727 5.3065 2.4974 19 6 4.8306 6.6056 2.6733 20 6 5.1848 7.3830 1.5799 21 6 5.5441 8.7044 1.7608 22 6 5.5606 9.2498 3.0315 23 6 5.2127 8.4760 4.1230 24 7 5.2310 9.0632 5.4815 25 8 4.9250 8.3818 6.4436 26 8 5.5520 10.2277 5.6373 27 6 4.8480 7.1551 3.9468 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.9557 0.7809 -0.8907 32 1 3.9564 0.7806 0.8892 33 1 2.6125 1.5005 -3.2608 34 1 5.4811 4.8936 0.7421 35 1 3.7819 5.3882 0.5520 36 1 5.1759 6.9563 0.5878 37 1 5.8162 9.3109 0.9098 38 1 5.8454 10.2821 3.1714 39 1 4.5767 6.5510 4.7999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348781692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:29 Heat of formation + Delta-G solvation = -111.047714 kcal Electronic energy + Delta-G solvation = -28849.430691 eV Core-core repulsion = 24341.465237 eV Total energy + Delta-G solvation = -4507.965454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.25632 -40.45478 -39.58848 -38.55197 -37.39225 -36.63105 -35.53599 -34.80108 -32.10833 -31.86465 -30.92707 -29.36975 -27.62941 -26.65810 -26.09924 -24.76139 -23.12678 -22.30585 -20.60531 -19.64019 -19.46855 -18.76125 -17.69188 -17.61050 -17.33698 -16.76555 -16.49470 -16.14602 -16.06616 -15.71851 -15.53102 -15.24647 -14.53733 -14.49952 -14.29256 -13.81087 -13.41914 -12.95732 -12.86182 -12.62152 -12.40889 -12.35953 -11.90756 -11.67693 -11.53459 -11.51425 -11.40216 -11.20904 -11.20495 -11.05521 -10.97912 -10.80160 -10.60625 -9.93612 -9.80983 -9.79622 -9.21267 -8.87137 -8.65793 -8.23007 -6.76105 -4.28549 -0.28361 0.85634 1.25176 1.26647 2.81259 2.90979 3.02325 3.04644 3.14083 3.28720 3.53454 3.77574 3.88018 4.24385 4.39038 4.48922 4.64414 4.66135 4.71826 4.82805 5.23757 5.33881 5.47948 5.55061 5.61576 5.67104 5.71510 5.76300 5.83103 5.85180 5.90362 6.07429 6.23782 6.31943 6.42837 6.99848 7.17042 7.23755 7.38506 7.56587 7.92979 8.69756 8.93299 9.05048 9.44547 10.30589 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.002911 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.662766 B = 9615.325505 C =11164.824565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.484 3.516 4 O -0.499 6.499 5 C 0.158 3.842 6 N -0.421 5.421 7 C -0.352 4.352 8 H 0.104 0.896 9 C 0.044 3.956 10 N -0.859 5.859 11 Si 0.929 3.071 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.269 1.269 15 C 0.470 3.530 16 O -0.579 6.579 17 C 0.059 3.941 18 O -0.280 6.280 19 C 0.149 3.851 20 C -0.162 4.162 21 C -0.074 4.074 22 C -0.104 4.104 23 C -0.007 4.007 24 N 0.030 4.970 25 O -0.156 6.156 26 O -0.161 6.161 27 C -0.096 4.096 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.277 0.723 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 6.125 0.857 7.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.325 3.675 4 O -0.384 6.384 5 C 0.033 3.967 6 N -0.141 5.141 7 C -0.479 4.479 8 H 0.121 0.879 9 C -0.163 4.163 10 N -0.495 5.495 11 Si 0.755 3.245 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.258 3.742 16 O -0.463 6.463 17 C -0.019 4.019 18 O -0.191 6.191 19 C 0.101 3.899 20 C -0.181 4.181 21 C -0.093 4.093 22 C -0.124 4.124 23 C -0.089 4.089 24 N 0.550 4.450 25 O -0.373 6.373 26 O -0.377 6.377 27 C -0.115 4.115 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.144 0.856 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.556 5.594 0.697 6.665 hybrid contribution -0.018 0.494 -1.040 1.152 sum 3.538 6.088 -0.343 7.050 Atomic orbital electron populations 1.22957 0.78461 1.01954 1.01720 1.86448 1.21858 1.35250 1.85622 1.23855 0.92198 0.80683 0.70721 1.90521 1.66485 1.36398 1.44974 1.20493 0.87487 0.84729 1.03986 1.43244 1.57072 1.08242 1.05568 1.19590 1.35456 1.10532 0.82311 0.87886 1.25255 0.94485 0.96775 0.99811 1.69848 1.21563 1.29664 1.28460 0.85906 0.79102 0.79191 0.80346 1.19882 1.20784 1.19335 1.19382 0.83553 0.86740 0.84561 1.90616 1.54371 1.69556 1.31707 1.22581 1.02857 0.95919 0.80522 1.86211 1.81277 1.20995 1.30596 1.18727 0.93632 0.85081 0.92472 1.21918 1.01135 0.95216 0.99822 1.20975 0.97425 0.94548 0.96341 1.20903 0.99649 1.01182 0.90629 1.20671 1.11484 0.94580 0.82200 1.43570 0.97713 1.00654 1.03102 1.94566 1.50528 1.60638 1.31582 1.94515 1.50252 1.00973 1.91950 1.20081 1.00792 0.92839 0.97835 0.93053 0.92557 0.89471 0.85624 0.89604 0.91270 0.89457 0.88831 0.83014 0.83252 0.83053 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.79 16 2 O -0.37 -7.71 10.57 -39.26 -0.41 -8.12 16 3 C 0.48 11.43 6.13 36.00 0.22 11.65 16 4 O -0.50 -13.27 15.76 -18.75 -0.30 -13.57 16 5 C 0.16 3.53 5.14 -5.20 -0.03 3.51 16 6 N -0.42 -9.67 2.18 -116.10 -0.25 -9.92 16 7 C -0.35 -7.81 9.14 -14.93 -0.14 -7.94 16 8 H 0.10 2.03 6.56 -52.48 -0.34 1.69 16 9 C 0.04 0.97 4.88 -17.47 -0.09 0.89 16 10 N -0.86 -20.42 9.27 55.50 0.51 -19.90 16 11 Si 0.93 17.18 29.60 -169.99 -5.03 12.15 16 12 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 13 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 14 H -0.27 -4.79 7.11 56.52 0.40 -4.38 16 15 C 0.47 10.66 7.49 -10.98 -0.08 10.58 16 16 O -0.58 -14.83 16.18 -14.36 -0.23 -15.07 16 17 C 0.06 1.04 3.67 36.01 0.13 1.17 16 18 O -0.28 -4.96 9.67 -39.32 -0.38 -5.34 16 19 C 0.15 2.11 6.69 -39.21 -0.26 1.84 16 20 C -0.16 -1.80 9.04 -39.43 -0.36 -2.15 16 21 C -0.07 -0.67 10.04 -39.60 -0.40 -1.06 16 22 C -0.10 -1.06 9.55 -39.56 -0.38 -1.44 16 23 C -0.01 -0.08 6.85 -79.97 -0.55 -0.63 16 24 N 0.03 0.43 4.45 33.95 0.15 0.58 16 25 O -0.16 -2.40 18.45 -29.46 -0.54 -2.94 16 26 O -0.16 -2.29 18.44 -29.46 -0.54 -2.83 16 27 C -0.10 -1.31 9.49 -39.43 -0.37 -1.69 16 28 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 29 H 0.06 0.97 8.13 -51.93 -0.42 0.54 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.13 2.74 6.38 -51.93 -0.33 2.41 16 32 H 0.09 1.79 7.61 -51.93 -0.40 1.40 16 33 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 34 H 0.09 1.29 7.21 -51.93 -0.37 0.91 16 35 H 0.09 1.56 7.62 -51.93 -0.40 1.17 16 36 H 0.15 1.47 6.30 -52.49 -0.33 1.14 16 37 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.15 1.25 7.60 -52.49 -0.40 0.85 16 39 H 0.16 2.22 7.61 -52.49 -0.40 1.82 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -31.02 352.22 -6.74 -37.77 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.80 Total: 5.39 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: -1.23 Total: 16.50 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: 0.41 Total: -29.24 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -2.41 Total: -47.88 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.02 -6.74 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348781692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.279 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds