Wall clock time and date at job start Tue Mar 31 2020 20:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99943 * 2 1 4 4 O 1.20827 * 119.99781 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99761 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.37103 * 119.99667 * 263.99274 * 6 5 3 8 8 H 1.08007 * 119.99784 * 197.01175 * 7 6 5 9 9 C 1.38943 * 120.00508 * 17.00711 * 7 6 5 10 10 N 1.31416 * 119.99506 * 21.26013 * 9 7 6 11 11 Si 1.86797 * 120.00567 * 201.25609 * 9 7 6 12 12 H 1.48500 * 109.46997 * 90.00030 * 11 9 7 13 13 H 1.48500 * 109.47238 * 210.00243 * 11 9 7 14 14 H 1.48507 * 109.46972 * 330.00124 * 11 9 7 15 15 C 1.34776 * 120.00259 * 83.98541 * 6 5 3 16 16 O 1.21286 * 119.99957 * 0.02562 * 15 6 5 17 17 C 1.50704 * 119.99905 * 180.27615 * 15 6 5 18 18 O 1.42899 * 109.46997 * 179.72867 * 17 15 6 19 19 C 1.35896 * 117.00167 * 180.02562 * 18 17 15 20 20 C 1.38759 * 120.05380 * 359.72329 * 19 18 17 21 21 C 1.38126 * 119.94261 * 179.78992 * 20 19 18 22 22 C 1.38286 * 120.05354 * 0.48719 * 21 20 19 23 23 C 1.38244 * 120.11407 * 359.73969 * 22 21 20 24 24 N 1.48010 * 119.97115 * 180.02562 * 23 22 21 25 25 O 1.21803 * 119.99745 * 180.02562 * 24 23 22 26 26 O 1.21795 * 119.99778 * 0.02831 * 24 23 22 27 27 C 1.38167 * 120.05617 * 0.02877 * 23 22 21 28 28 H 1.09006 * 109.47137 * 300.00658 * 1 2 3 29 29 H 1.09004 * 109.46826 * 59.99973 * 1 2 3 30 30 H 1.08995 * 109.47349 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47376 * 59.99887 * 5 3 2 32 32 H 1.09003 * 109.47391 * 299.99693 * 5 3 2 33 33 H 0.96999 * 119.99878 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47258 * 299.72882 * 17 15 6 35 35 H 1.08998 * 109.46881 * 59.73150 * 17 15 6 36 36 H 1.07995 * 120.02576 * 0.02562 * 20 19 18 37 37 H 1.07995 * 119.97205 * 180.22892 * 21 20 19 38 38 H 1.07999 * 119.94513 * 179.76754 * 22 21 20 39 39 H 1.07998 * 120.02453 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2948 3.3015 -1.1822 8 1 4.8541 4.2254 -1.1744 9 6 3.8928 2.7430 -2.3893 10 7 2.8930 1.8907 -2.4182 11 14 4.7732 3.2038 -3.9710 12 1 5.9033 2.2678 -4.1992 13 1 3.8231 3.1196 -5.1091 14 1 5.2934 4.5906 -3.8620 15 6 4.0560 3.3609 1.1595 16 8 3.7793 2.8108 2.2044 17 6 4.4774 4.8079 1.1582 18 8 4.4727 5.3065 2.4974 19 6 4.8306 6.6056 2.6733 20 6 5.1848 7.3830 1.5799 21 6 5.5441 8.7044 1.7608 22 6 5.5606 9.2498 3.0315 23 6 5.2127 8.4760 4.1230 24 7 5.2310 9.0632 5.4815 25 8 4.9250 8.3818 6.4436 26 8 5.5520 10.2277 5.6373 27 6 4.8480 7.1551 3.9468 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.9557 0.7809 -0.8907 32 1 3.9564 0.7806 0.8892 33 1 2.6125 1.5005 -3.2608 34 1 5.4811 4.8936 0.7421 35 1 3.7819 5.3882 0.5520 36 1 5.1759 6.9563 0.5878 37 1 5.8162 9.3109 0.9098 38 1 5.8454 10.2821 3.1714 39 1 4.5767 6.5510 4.7999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348781692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:28 Heat of formation + Delta-G solvation = -127.958328 kcal Electronic energy + Delta-G solvation = -28850.163990 eV Core-core repulsion = 24341.465237 eV Total energy + Delta-G solvation = -4508.698753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.33425 -41.67914 -41.22387 -40.12902 -38.59605 -37.74444 -37.28773 -36.59518 -33.59951 -33.01834 -32.05024 -30.87588 -29.01041 -27.84097 -27.55645 -26.39320 -24.03689 -23.41618 -22.24675 -21.24806 -20.66218 -19.87099 -19.20890 -18.69968 -18.64718 -18.50918 -17.67375 -17.51100 -17.37030 -17.12977 -17.04046 -16.78077 -16.10465 -15.96178 -15.29327 -15.14139 -14.76284 -14.35212 -14.27270 -14.13980 -13.78148 -13.45086 -13.25332 -13.14341 -12.90468 -12.85027 -12.64698 -12.56735 -12.47790 -12.35720 -12.29198 -12.23359 -12.03702 -11.61622 -11.58287 -10.99258 -10.68254 -10.61816 -9.98983 -9.67692 -8.43402 -6.02002 -1.31558 -0.03247 0.23327 0.24683 1.34802 1.52280 1.56100 1.64579 1.70535 1.77471 2.19516 2.24522 2.32773 2.90061 3.06167 3.40395 3.57398 3.69030 3.74320 3.92954 4.00650 4.09845 4.18971 4.27736 4.32508 4.38308 4.38810 4.47906 4.65301 4.66601 4.69664 4.89419 4.97975 5.02710 5.32168 5.36814 5.53566 5.64871 6.02799 6.24952 6.43559 6.99220 7.14644 7.33820 7.74218 8.63648 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.002911 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.662766 B = 9615.325505 C =11164.824565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.537 6.537 5 C 0.153 3.847 6 N -0.428 5.428 7 C -0.366 4.366 8 H 0.130 0.870 9 C 0.001 3.999 10 N -0.892 5.892 11 Si 0.999 3.001 12 H -0.271 1.271 13 H -0.295 1.295 14 H -0.249 1.249 15 C 0.451 3.549 16 O -0.622 6.622 17 C 0.071 3.929 18 O -0.314 6.314 19 C 0.124 3.876 20 C -0.150 4.150 21 C -0.055 4.055 22 C -0.087 4.087 23 C -0.021 4.021 24 N 0.030 4.970 25 O -0.207 6.207 26 O -0.139 6.139 27 C -0.113 4.113 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.274 0.726 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.172 0.828 37 H 0.199 0.801 38 H 0.180 0.820 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 8.398 -1.604 10.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.328 3.672 4 O -0.425 6.425 5 C 0.028 3.972 6 N -0.147 5.147 7 C -0.492 4.492 8 H 0.147 0.853 9 C -0.202 4.202 10 N -0.529 5.529 11 Si 0.822 3.178 12 H -0.196 1.196 13 H -0.222 1.222 14 H -0.172 1.172 15 C 0.240 3.760 16 O -0.509 6.509 17 C -0.006 4.006 18 O -0.226 6.226 19 C 0.077 3.923 20 C -0.169 4.169 21 C -0.073 4.073 22 C -0.106 4.106 23 C -0.103 4.103 24 N 0.547 4.453 25 O -0.412 6.412 26 O -0.363 6.363 27 C -0.133 4.133 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.122 0.878 36 H 0.190 0.810 37 H 0.216 0.784 38 H 0.197 0.803 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.068 7.786 -1.705 9.445 hybrid contribution -0.526 -0.151 -0.316 0.632 sum 4.542 7.634 -2.021 9.110 Atomic orbital electron populations 1.23304 0.76114 1.04926 1.01205 1.86422 1.24159 1.33714 1.84971 1.24068 0.92673 0.80838 0.69610 1.90484 1.67370 1.37697 1.46996 1.20571 0.87109 0.85371 1.04162 1.43524 1.56596 1.08407 1.06213 1.20201 1.35483 1.11472 0.82012 0.85259 1.26175 0.94647 0.96591 1.02779 1.69964 1.23008 1.31021 1.28923 0.84835 0.77422 0.79864 0.75695 1.19642 1.22190 1.17199 1.20302 0.83077 0.88768 0.83824 1.90571 1.56268 1.71001 1.33093 1.22416 1.04600 0.92472 0.81102 1.86143 1.82655 1.23307 1.30533 1.18875 0.95726 0.84234 0.93503 1.22237 0.99338 0.95823 0.99470 1.21507 0.95018 0.93728 0.97067 1.21396 0.97139 1.02002 0.90038 1.20807 1.13084 0.94608 0.81851 1.43816 0.97265 1.00547 1.03691 1.94581 1.53110 1.60996 1.32556 1.94469 1.48685 1.00976 1.92178 1.19995 1.02153 0.93520 0.97642 0.93251 0.93429 0.84746 0.85467 0.89087 0.91590 0.86195 0.87840 0.81038 0.78445 0.80317 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.56 113.37 1.20 2.45 16 2 O -0.38 -15.64 10.57 -51.43 -0.54 -16.19 16 3 C 0.49 23.48 6.13 71.23 0.44 23.91 16 4 O -0.54 -29.43 15.76 21.96 0.35 -29.08 16 5 C 0.15 7.02 5.14 85.63 0.44 7.46 16 6 N -0.43 -19.78 2.18 -639.62 -1.39 -21.17 16 7 C -0.37 -15.75 9.14 84.04 0.77 -14.98 16 8 H 0.13 4.70 6.56 -2.91 -0.02 4.68 16 9 C 0.00 0.06 4.88 84.92 0.41 0.47 16 10 N -0.89 -42.55 9.27 21.66 0.20 -42.35 16 11 Si 1.00 33.71 29.60 68.60 2.03 35.74 16 12 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 13 H -0.30 -10.54 7.11 99.48 0.71 -9.83 16 14 H -0.25 -7.54 7.11 99.48 0.71 -6.83 16 15 C 0.45 20.75 7.49 87.66 0.66 21.41 16 16 O -0.62 -33.21 16.18 15.99 0.26 -32.95 16 17 C 0.07 2.45 3.67 71.24 0.26 2.71 16 18 O -0.31 -11.27 9.67 -73.35 -0.71 -11.98 16 19 C 0.12 3.40 6.69 22.51 0.15 3.55 16 20 C -0.15 -2.79 9.04 22.37 0.20 -2.59 16 21 C -0.06 -0.70 10.04 22.25 0.22 -0.48 16 22 C -0.09 -1.42 9.55 22.28 0.21 -1.21 16 23 C -0.02 -0.50 6.85 36.36 0.25 -0.26 16 24 N 0.03 0.86 4.45 -46.50 -0.21 0.65 16 25 O -0.21 -6.73 18.45 18.88 0.35 -6.38 16 26 O -0.14 -3.73 18.44 18.89 0.35 -3.38 16 27 C -0.11 -3.18 9.49 22.37 0.21 -2.97 16 28 H 0.05 1.63 8.13 -2.38 -0.02 1.61 16 29 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.13 5.69 6.38 -2.39 -0.02 5.67 16 32 H 0.09 3.96 7.61 -2.39 -0.02 3.94 16 33 H 0.27 12.56 8.31 -92.71 -0.77 11.79 16 34 H 0.12 3.23 7.21 -2.39 -0.02 3.21 16 35 H 0.10 3.29 7.62 -2.39 -0.02 3.27 16 36 H 0.17 2.51 6.30 -2.91 -0.02 2.49 16 37 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.18 2.01 7.60 -2.91 -0.02 1.99 16 39 H 0.14 4.38 7.61 -2.91 -0.02 4.35 16 Total: -1.00 -71.35 352.22 7.22 -64.12 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 1.12 Total: 23.47 kcal Atomic # 6 Polarization: 34.06 SS G_CDS: 5.42 Total: 39.48 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.40 Total: -62.86 kcal Atomic # 8 Polarization: -100.01 SS G_CDS: 0.05 Total: -99.96 kcal Atomic # 14 Polarization: 33.71 SS G_CDS: 2.03 Total: 35.74 kcal Total: -71.35 7.22 -64.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348781692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.835 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds