Wall clock time and date at job start Tue Mar 31 2020 20:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 117.00123 * 2 1 4 4 O 1.20826 * 119.99791 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00083 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47441 * 180.02562 * 5 3 2 7 7 C 1.33339 * 119.99840 * 279.85474 * 6 5 3 8 8 H 1.07997 * 119.99706 * 315.77621 * 7 6 5 9 9 C 1.46779 * 119.99964 * 135.78216 * 7 6 5 10 10 N 1.29309 * 120.00561 * 340.68700 * 9 7 6 11 11 Si 1.86801 * 119.99591 * 160.68392 * 9 7 6 12 12 H 1.48504 * 109.47145 * 65.00355 * 11 9 7 13 13 H 1.48506 * 109.46977 * 185.00085 * 11 9 7 14 14 H 1.48494 * 109.47431 * 305.00451 * 11 9 7 15 15 C 1.34774 * 120.00351 * 99.84160 * 6 5 3 16 16 O 1.21470 * 120.00387 * 186.64432 * 15 6 5 17 17 C 1.47713 * 119.99831 * 6.65800 * 15 6 5 18 18 C 1.39700 * 120.12153 * 323.90511 * 17 15 6 19 19 C 1.37942 * 119.95266 * 180.25771 * 18 17 15 20 20 C 1.38308 * 120.21741 * 359.49253 * 19 18 17 21 21 N 1.48010 * 119.87203 * 180.23101 * 20 19 18 22 22 O 1.31703 * 120.00217 * 0.02562 * 21 20 19 23 23 O 1.31703 * 119.99778 * 180.02562 * 21 20 19 24 24 C 1.38837 * 120.25245 * 0.25740 * 20 19 18 25 25 O 1.35906 * 119.98027 * 179.97438 * 24 20 19 26 26 C 1.42897 * 117.00208 * 180.02562 * 25 24 20 27 27 C 1.38470 * 120.03973 * 0.02562 * 24 20 19 28 28 H 1.08997 * 109.47202 * 299.99876 * 1 2 3 29 29 H 1.09004 * 109.47055 * 60.00349 * 1 2 3 30 30 H 1.09006 * 109.47394 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46999 * 60.00050 * 5 3 2 32 32 H 1.09001 * 109.47024 * 300.00597 * 5 3 2 33 33 H 0.97000 * 120.00463 * 185.04505 * 10 9 7 34 34 H 1.07997 * 120.02073 * 0.03463 * 18 17 15 35 35 H 1.08002 * 119.88618 * 179.77334 * 19 18 17 36 36 H 1.08996 * 109.47338 * 60.00451 * 26 25 24 37 37 H 1.08998 * 109.47385 * 180.02562 * 26 25 24 38 38 H 1.09006 * 109.46747 * 300.00004 * 26 25 24 39 39 H 1.07993 * 120.10499 * 179.97438 * 27 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 3.9818 3.3752 -1.1365 8 1 4.3786 2.9344 -2.0390 9 6 3.4425 4.7401 -1.1621 10 7 2.6454 5.1382 -0.2249 11 14 3.9077 5.9023 -2.5486 12 1 3.3717 5.3816 -3.8318 13 1 3.3345 7.2460 -2.2815 14 1 5.3867 6.0032 -2.6346 15 6 4.3638 3.2690 1.1513 16 8 4.5921 4.4618 1.1760 17 6 4.5051 2.4645 2.3820 18 6 3.6249 1.4095 2.6348 19 6 3.7568 0.6638 3.7878 20 6 4.7647 0.9501 4.6905 21 7 4.9023 0.1418 5.9227 22 8 4.0662 -0.8483 6.1576 23 8 5.8609 0.4127 6.7843 24 6 5.6476 1.9933 4.4456 25 8 6.6356 2.2702 5.3367 26 6 7.5076 3.3575 5.0214 27 6 5.5213 2.7524 3.2944 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7808 0.8908 33 1 2.2313 6.0136 -0.2796 34 1 2.8396 1.1802 1.9298 35 1 3.0735 -0.1493 3.9839 36 1 6.9267 4.2756 4.9338 37 1 8.2486 3.4703 5.8128 38 1 8.0131 3.1557 4.0769 39 1 6.2071 3.5643 3.1030 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348795135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:41 Heat of formation + Delta-G solvation = -50.187479 kcal Electronic energy + Delta-G solvation = -30211.410772 eV Core-core repulsion = 25706.084416 eV Total energy + Delta-G solvation = -4505.326356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -40.92919 -40.08361 -38.80303 -38.34985 -36.98583 -35.99146 -34.57308 -33.95070 -32.77893 -31.52581 -30.55657 -28.82457 -27.62356 -26.96628 -26.49523 -24.54491 -22.48908 -22.42403 -21.08036 -20.10416 -18.70645 -18.13367 -17.74067 -17.28670 -16.99425 -16.40769 -16.22162 -16.16836 -15.91234 -15.35355 -15.30034 -15.02726 -14.69421 -14.49613 -13.96457 -13.74495 -13.43105 -13.12281 -12.87556 -12.57898 -12.40183 -12.02593 -11.93217 -11.76053 -11.54881 -11.43739 -11.16075 -11.06828 -11.00330 -10.94675 -10.65022 -10.54266 -10.42037 -10.31400 -9.94494 -9.34241 -9.24075 -8.68774 -8.51469 -7.80420 -6.61433 -4.09916 -0.44389 1.12538 1.17059 1.49210 2.70007 2.86704 2.90954 3.04921 3.11989 3.13826 3.27775 3.88960 4.11818 4.29378 4.44647 4.72368 4.84826 4.85062 5.00317 5.08938 5.10114 5.12559 5.27760 5.31969 5.35833 5.42066 5.43816 5.49017 5.70074 5.72196 5.77361 5.90677 6.08552 6.26645 6.36590 6.76283 6.98730 7.02172 7.17036 7.63871 8.28127 8.35205 8.68952 9.00519 9.78580 10.36541 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.004544 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.557977 B = 6161.086730 C = 8180.876849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.374 6.374 3 C 0.421 3.579 4 O -0.449 6.449 5 C 0.078 3.922 6 N -0.385 5.385 7 C -0.362 4.362 8 H 0.096 0.904 9 C 0.080 3.920 10 N -0.738 5.738 11 Si 0.921 3.079 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.265 1.265 15 C 0.468 3.532 16 O -0.517 6.517 17 C 0.005 3.995 18 C -0.163 4.163 19 C -0.019 4.019 20 C -0.057 4.057 21 N 0.004 4.996 22 O -0.220 6.220 23 O -0.172 6.172 24 C 0.200 3.800 25 O -0.282 6.282 26 C 0.017 3.983 27 C -0.187 4.187 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.279 0.721 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -6.514 1.287 6.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.292 6.292 3 C 0.259 3.741 4 O -0.331 6.331 5 C -0.046 4.046 6 N -0.101 5.101 7 C -0.490 4.490 8 H 0.114 0.886 9 C -0.146 4.146 10 N -0.363 5.363 11 Si 0.746 3.254 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.190 1.190 15 C 0.261 3.739 16 O -0.397 6.397 17 C -0.001 4.001 18 C -0.183 4.183 19 C -0.038 4.038 20 C -0.147 4.147 21 N 0.472 4.528 22 O -0.400 6.400 23 O -0.365 6.365 24 C 0.150 3.850 25 O -0.192 6.192 26 C -0.077 4.077 27 C -0.208 4.208 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.164 0.836 35 H 0.176 0.824 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.934 -5.183 1.133 5.647 hybrid contribution -0.328 0.500 -0.423 0.733 sum 1.607 -4.682 0.710 5.001 Atomic orbital electron populations 1.23133 0.77495 1.02832 1.02323 1.86537 1.22658 1.34695 1.85266 1.24802 0.93062 0.81644 0.74582 1.90827 1.65963 1.35456 1.40845 1.22101 0.86992 0.89669 1.05887 1.41951 1.52232 1.07692 1.08274 1.20088 1.43100 0.97034 0.88734 0.88608 1.26991 0.92804 0.98487 0.96290 1.68883 1.17946 1.19147 1.30343 0.86138 0.79938 0.78922 0.80375 1.19686 1.20626 1.18952 1.17674 0.85463 0.88009 0.82801 1.90637 1.52682 1.13354 1.82990 1.20847 0.91717 0.92852 0.94645 1.21630 1.01862 0.97005 0.97760 1.20794 0.93803 0.98557 0.90672 1.19630 1.05523 0.99756 0.89822 1.50133 1.00164 1.00340 1.02186 1.96228 1.38638 1.20910 1.84252 1.96269 1.23645 1.75234 1.41358 1.18548 0.86924 0.90655 0.88832 1.86395 1.39275 1.50452 1.43064 1.23311 0.93101 0.88190 1.03128 1.21196 1.03017 1.03026 0.93546 0.92308 0.92273 0.88718 0.87494 0.86509 0.90850 0.83592 0.82420 0.91659 0.87358 0.91774 0.82531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -5.58 10.57 -39.24 -0.41 -6.00 16 3 C 0.42 7.65 5.93 36.00 0.21 7.87 16 4 O -0.45 -10.13 15.89 -18.75 -0.30 -10.43 16 5 C 0.08 1.34 5.45 -5.20 -0.03 1.31 16 6 N -0.38 -8.45 2.07 -115.67 -0.24 -8.69 16 7 C -0.36 -8.66 8.99 -13.45 -0.12 -8.78 16 8 H 0.10 2.14 8.00 -52.49 -0.42 1.72 16 9 C 0.08 1.98 4.49 -15.16 -0.07 1.92 16 10 N -0.74 -19.66 11.67 56.00 0.65 -19.01 16 11 Si 0.92 19.16 29.68 -169.99 -5.05 14.12 16 12 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 14 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 15 C 0.47 10.69 6.84 -12.39 -0.08 10.60 16 16 O -0.52 -13.70 14.24 5.39 0.08 -13.62 16 17 C 0.01 0.10 5.43 -104.98 -0.57 -0.47 16 18 C -0.16 -2.65 7.38 -39.14 -0.29 -2.94 16 19 C -0.02 -0.29 9.56 -39.66 -0.38 -0.66 16 20 C -0.06 -0.95 6.90 -79.70 -0.55 -1.50 16 21 N 0.00 0.07 4.98 34.08 0.17 0.24 16 22 O -0.22 -4.09 19.14 -31.57 -0.60 -4.69 16 23 O -0.17 -3.31 17.86 -39.25 -0.70 -4.01 16 24 C 0.20 3.24 6.67 -39.27 -0.26 2.97 16 25 O -0.28 -4.23 8.39 -41.68 -0.35 -4.58 16 26 C 0.02 0.18 9.81 101.05 0.99 1.17 16 27 C -0.19 -3.10 8.60 -39.00 -0.34 -3.44 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.11 1.56 8.11 -51.93 -0.42 1.14 16 32 H 0.12 1.73 4.29 -51.93 -0.22 1.50 16 33 H 0.28 7.04 8.27 -40.82 -0.34 6.70 16 34 H 0.15 2.38 3.79 -52.49 -0.20 2.18 16 35 H 0.16 2.04 7.56 -52.49 -0.40 1.65 16 36 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 39 H 0.16 2.43 6.25 -52.49 -0.33 2.11 16 LS Contribution 346.55 15.07 5.22 5.22 Total: -1.00 -32.97 346.55 -5.55 -38.52 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -3.61 Total: 3.37 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -0.42 Total: 9.56 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.58 Total: -27.46 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -2.29 Total: -43.33 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.05 Total: 14.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.97 -5.55 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348795135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.667 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds